Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:26:01 (1498383): wrapper (7.7.26015): starting
23:26:01 (1498383): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 23:26:01] Arguments: --nthreads 4
[2025-06-04 23:26:01] Threads: 4
[2025-06-04 23:26:01] Checking for CVMFS
[2025-06-04 23:26:01] No cvmfs_config command found, will try listing directly
[2025-06-04 23:26:01] CVMFS is ok
[2025-06-04 23:26:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 23:26:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 23:26:01] Further information can be found at the LHC@home message board.
[2025-06-04 23:26:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 23:26:01] Checking for apptainer binary...
[2025-06-04 23:26:01] which: no apptainer in ((null))
[2025-06-04 23:26:01] apptainer is not installed, using version from CVMFS
[2025-06-04 23:26:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 23:26:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2025-06-04 23:26:01] apptainer works
[2025-06-04 23:26:01] Set ATHENA_PROC_NUMBER=4
[2025-06-04 23:26:01] Set ATHENA_CORE_NUMBER=4
[2025-06-04 23:26:01] Starting ATLAS job with PandaID=6668442626
[2025-06-04 23:26:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:36:12]  *** The last 200 lines of the pilot log: ***
[2025-06-05 03:36:12] 2025-06-05 01:35:49,573 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6668442626/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 03:36:12] 2025-06-05 01:35:49,931 | INFO     | number of running child processes to parent process 1509061: 1
[2025-06-05 03:36:12] 2025-06-05 01:35:49,931 | INFO     | maximum number of monitored processes: 6
[2025-06-05 03:36:12] 2025-06-05 01:35:52,434 | INFO     | monitor loop #1083: job 0:6668442626 is in state 'finished'
[2025-06-05 03:36:12] 2025-06-05 01:35:52,434 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 03:36:12] 2025-06-05 01:35:54,937 | INFO     | monitor loop #1084: job 0:6668442626 is in state 'finished'
[2025-06-05 03:36:12] 2025-06-05 01:35:54,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-05 03:36:12] 2025-06-05 01:35:56,191 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-05 03:36:12] 2025-06-05 01:35:56,191 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6668442626/memory_monitor_summary.json (trf name=prmon)
[2025-06-05 03:36:12] 2025-06-05 01:35:56,192 | INFO     | extracted standard info from prmon json
[2025-06-05 03:36:12] 2025-06-05 01:35:56,192 | INFO     | extracted standard memory fields from prmon json
[2025-06-05 03:36:12] 2025-06-05 01:35:56,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-05 03:36:12] 2025-06-05 01:35:56,193 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-05 03:36:12] 2025-06-05 01:35:56,193 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-05 03:36:12] 2025-06-05 01:35:56,198 | INFO     | fitting pss+swap vs Time
[2025-06-05 03:36:12] 2025-06-05 01:35:56,198 | INFO     | sum of square deviations: 4560048290.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,200 | INFO     | sum of deviations: 14223691714.000006
[2025-06-05 03:36:12] 2025-06-05 01:35:56,200 | INFO     | mean x: 1749079845.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,200 | INFO     | mean y: 2338047.220408163
[2025-06-05 03:36:12] 2025-06-05 01:35:56,200 | INFO     | -- intersect: -5453387619.766095
[2025-06-05 03:36:12] 2025-06-05 01:35:56,200 | INFO     | intersect: -5453387619.766095
[2025-06-05 03:36:12] 2025-06-05 01:35:56,201 | INFO     | chi2: 1.7137986998732522
[2025-06-05 03:36:12] 2025-06-05 01:35:56,201 | INFO     | sum of square deviations: 4286517580.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,203 | INFO     | sum of deviations: 13682844333.499994
[2025-06-05 03:36:12] 2025-06-05 01:35:56,203 | INFO     | mean x: 1749079692.5
[2025-06-05 03:36:12] 2025-06-05 01:35:56,203 | INFO     | mean y: 2337745.6458333335
[2025-06-05 03:36:12] 2025-06-05 01:35:56,203 | INFO     | -- intersect: -5580838973.616225
[2025-06-05 03:36:12] 2025-06-05 01:35:56,203 | INFO     | intersect: -5580838973.616225
[2025-06-05 03:36:12] 2025-06-05 01:35:56,204 | INFO     | chi2: 1.7142349967412998
[2025-06-05 03:36:12] 2025-06-05 01:35:56,204 | INFO     | current chi2=1.7142349967412998 (change=-0.02545788301040538 %)
[2025-06-05 03:36:12] 2025-06-05 01:35:56,204 | INFO     | right removable region: 239
[2025-06-05 03:36:12] 2025-06-05 01:35:56,204 | INFO     | sum of square deviations: 4286517580.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,206 | INFO     | sum of deviations: -25226425956.5
[2025-06-05 03:36:12] 2025-06-05 01:35:56,206 | INFO     | mean x: 1749079997.5
[2025-06-05 03:36:12] 2025-06-05 01:35:56,206 | INFO     | mean y: 2359864.154166667
[2025-06-05 03:36:12] 2025-06-05 01:35:56,206 | INFO     | -- intersect: 10295805820.097023
[2025-06-05 03:36:12] 2025-06-05 01:35:56,206 | INFO     | intersect: 10295805820.097023
[2025-06-05 03:36:12] 2025-06-05 01:35:56,207 | INFO     | chi2: 0.08946282614770135
[2025-06-05 03:36:12] 2025-06-05 01:35:56,207 | INFO     | current chi2=0.08946282614770135 (change=94.77985214049248 %)
[2025-06-05 03:36:12] 2025-06-05 01:35:56,207 | INFO     | sum of square deviations: 4024149870.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,209 | INFO     | sum of deviations: -23947753137.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,209 | INFO     | mean x: 1749080150.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,209 | INFO     | mean y: 2359105.365957447
[2025-06-05 03:36:12] 2025-06-05 01:35:56,209 | INFO     | -- intersect: 10411151273.195166
[2025-06-05 03:36:12] 2025-06-05 01:35:56,209 | INFO     | intersect: 10411151273.195166
[2025-06-05 03:36:12] 2025-06-05 01:35:56,210 | INFO     | chi2: 0.08512329454501238
[2025-06-05 03:36:12] 2025-06-05 01:35:56,210 | INFO     | current chi2=0.08512329454501238 (change=4.850653382584272 %)
[2025-06-05 03:36:12] 2025-06-05 01:35:56,210 | INFO     | left removable region: 20
[2025-06-05 03:36:12] 2025-06-05 01:35:56,210 | INFO     | sum of square deviations: 3256879670.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,212 | INFO     | sum of deviations: -12796868591.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,212 | INFO     | mean x: 1749080272.0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,212 | INFO     | mean y: 2352163.100456621
[2025-06-05 03:36:12] 2025-06-05 01:35:56,212 | INFO     | -- intersect: 6874804529.722444
[2025-06-05 03:36:12] 2025-06-05 01:35:56,212 | INFO     | intersect: 6874804529.722444
[2025-06-05 03:36:12] 2025-06-05 01:35:56,212 | INFO     | chi2: 0.057175251769678824
[2025-06-05 03:36:12] 2025-06-05 01:35:56,213 | INFO     | -- intersect: 6874804529.722444
[2025-06-05 03:36:12] 2025-06-05 01:35:56,213 | INFO     | current memory leak: -3.93 B/s (using 219 data points, chi2=0.06)
[2025-06-05 03:36:12] 2025-06-05 01:35:56,213 | INFO     | ..............................
[2025-06-05 03:36:12] 2025-06-05 01:35:56,213 | INFO     | . Timing measurements:
[2025-06-05 03:36:12] 2025-06-05 01:35:56,214 | INFO     | . get job = 0 s
[2025-06-05 03:36:12] 2025-06-05 01:35:56,214 | INFO     | . initial setup = 1 s
[2025-06-05 03:36:12] 2025-06-05 01:35:56,214 | INFO     | . payload setup = 8 s
[2025-06-05 03:36:12] 2025-06-05 01:35:56,214 | INFO     | . stage-in = 0 s
[2025-06-05 03:36:12] 2025-06-05 01:35:56,214 | INFO     | . payload execution = 14945 s
[2025-06-05 03:36:12] 2025-06-05 01:35:56,214 | INFO     | . stage-out = 1 s
[2025-06-05 03:36:12] 2025-06-05 01:35:56,214 | INFO     | . log creation = 0 s
[2025-06-05 03:36:12] 2025-06-05 01:35:56,214 | INFO     | ..............................
[2025-06-05 03:36:12] 2025-06-05 01:35:56,342 | INFO     | 
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | job summary report
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | --------------------------------------------------
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | PanDA job id: 6668442626
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | task id: 44871837
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | errors: (none)
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | pilot state: finished 
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | transexitcode: 0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | exeerrorcode: 0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,343 | INFO     | exeerrordiag: 
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | exitcode: 0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | exitmsg: OK
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | cpuconsumptiontime: 57573 s
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | nevents: 400
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | neventsw: 0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | pid: 1509061
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | pgrp: 1509061
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | corecount: 4
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | event service: False
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | sizes: {0: 2397402, 6: 2397608, 11: 2397636, 14957: 2428190, 14958: 2428189, 14959: 2437392, 14966: 2437506}
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | --------------------------------------------------
[2025-06-05 03:36:12] 2025-06-05 01:35:56,344 | INFO     | 
[2025-06-05 03:36:12] 2025-06-05 01:35:56,345 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-06-05 03:36:12] 2025-06-05 01:35:56,366 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,366 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,366 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,367 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,368 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,368 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-05 03:36:12] 2025-06-05 01:35:56,368 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,368 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-05 03:36:12] 2025-06-05 01:35:56,368 | INFO     | job 6668442626 has completed (purged errors)
[2025-06-05 03:36:12] 2025-06-05 01:35:56,368 | INFO     | overall cleanup function is called
[2025-06-05 03:36:12] 2025-06-05 01:35:57,376 | INFO     | --- collectZombieJob: --- 10, [1509061]
[2025-06-05 03:36:12] 2025-06-05 01:35:57,377 | INFO     | zombie collector waiting for pid 1509061
[2025-06-05 03:36:12] 2025-06-05 01:35:57,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-05 03:36:12] 2025-06-05 01:35:57,377 | INFO     | collected zombie processes
[2025-06-05 03:36:12] 2025-06-05 01:35:57,377 | INFO     | will attempt to kill all subprocesses of pid=1509061
[2025-06-05 03:36:12] 2025-06-05 01:35:57,758 | INFO     | process IDs to be killed: [1509061] (in reverse order)
[2025-06-05 03:36:12] 2025-06-05 01:35:57,873 | WARNING  | found no corresponding commands to process id(s)
[2025-06-05 03:36:12] 2025-06-05 01:35:57,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-05 03:36:12] 2025-06-05 01:35:57,885 | INFO     | did not find any defunct processes belonging to 1509061
[2025-06-05 03:36:12] 2025-06-05 01:35:57,898 | INFO     | did not find any defunct processes belonging to 1509061
[2025-06-05 03:36:12] 2025-06-05 01:35:57,898 | INFO     | ready for new job
[2025-06-05 03:36:12] 2025-06-05 01:35:57,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-05 03:36:12] 2025-06-05 01:35:57,901 | INFO     | **************************************
[2025-06-05 03:36:12] 2025-06-05 01:35:57,901 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-05 03:36:12] 2025-06-05 01:35:57,901 | INFO     | **************************************
[2025-06-05 03:36:12] 2025-06-05 01:35:57,901 | INFO     | 
[2025-06-05 03:36:12] 2025-06-05 01:35:57,905 | INFO     | architecture information:
[2025-06-05 03:36:12] 2025-06-05 01:35:57,906 | INFO     | executing command: cat /etc/os-release
[2025-06-05 03:36:12] 2025-06-05 01:35:57,922 | INFO     | cat /etc/os-release:
[2025-06-05 03:36:12] NAME="CentOS Linux"
[2025-06-05 03:36:12] VERSION="7 (Core)"
[2025-06-05 03:36:12] ID="centos"
[2025-06-05 03:36:12] ID_LIKE="rhel fedora"
[2025-06-05 03:36:12] VERSION_ID="7"
[2025-06-05 03:36:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-05 03:36:12] ANSI_COLOR="0;31"
[2025-06-05 03:36:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-05 03:36:12] HOME_URL="https://www.centos.org/"
[2025-06-05 03:36:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-05 03:36:12] 
[2025-06-05 03:36:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-05 03:36:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-05 03:36:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-05 03:36:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-05 03:36:12] 
[2025-06-05 03:36:12] 2025-06-05 01:35:57,922 | INFO     | **************************************
[2025-06-05 03:36:12] 2025-06-05 01:35:58,425 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-06-05 03:36:12] 2025-06-05 01:35:58,442 | INFO     | sufficient remaining disk space (660485439488 B)
[2025-06-05 03:36:12] 2025-06-05 01:35:58,442 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-05 03:36:12] 2025-06-05 01:35:58,443 | INFO     | current server update state: UPDATING_FINAL
[2025-06-05 03:36:12] 2025-06-05 01:35:58,443 | INFO     | update_server=False
[2025-06-05 03:36:12] 2025-06-05 01:35:58,443 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-05 03:36:12] 2025-06-05 01:35:58,443 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-05 03:36:12] 2025-06-05 01:35:58,444 | INFO     | found 0 job(s) in 20 queues
[2025-06-05 03:36:12] 2025-06-05 01:35:58,444 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-05 03:36:12] 2025-06-05 01:35:58,444 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-05 03:36:12] 2025-06-05 01:35:58,446 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:36:12] 2025-06-05 01:35:58,446 | INFO     | aborting loop
[2025-06-05 03:36:12] 2025-06-05 01:35:59,390 | INFO     | all payload control threads have been joined
[2025-06-05 03:36:12] 2025-06-05 01:35:59,430 | INFO     | all data control threads have been joined
[2025-06-05 03:36:12] 2025-06-05 01:35:59,448 | INFO     | [job] job monitor thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:35:59,449 | INFO     | [job] retrieve thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:35:59,486 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:35:59,493 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-05 03:36:12] 2025-06-05 01:35:59,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-05 03:36:12] 2025-06-05 01:35:59,645 | INFO     | [payload] validate_post thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:35:59,723 | INFO     | all job control threads have been joined
[2025-06-05 03:36:12] 2025-06-05 01:35:59,917 | INFO     | [payload] execute_payloads thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:00,294 | INFO     | [job] validate thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:00,294 | INFO     | [data] copytool_in thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:00,396 | INFO     | [payload] control thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:00,436 | INFO     | [data] control thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:00,595 | INFO     | [job] create_data_payload thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:00,621 | INFO     | [payload] failed_post thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:00,727 | INFO     | [job] control thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:00,863 | INFO     | [payload] validate_pre thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:01,323 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-05 03:36:12] 2025-06-05 01:36:01,498 | INFO     | [data] copytool_out thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:02,328 | INFO     | [job] queue monitor thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:03,600 | INFO     | [data] queue_monitor thread has finished
[2025-06-05 03:36:12] 2025-06-05 01:36:04,533 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23157638494016)>', '<ExcThread(monitor, started 23157402474240)>']
[2025-06-05 03:36:12] 2025-06-05 01:36:05,478 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-05 03:36:12] 2025-06-05 01:36:05,478 | INFO     | [monitor] control thread has ended
[2025-06-05 03:36:12] 2025-06-05 01:36:09,559 | INFO     | all workflow threads have been joined
[2025-06-05 03:36:12] 2025-06-05 01:36:09,559 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-05 03:36:12] 2025-06-05 01:36:09,560 | INFO     | traces error code: 0
[2025-06-05 03:36:12] 2025-06-05 01:36:09,560 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-05 03:36:12] 2025-06-05 01:36:09,718 [wrapper] ==== pilot stdout END ====
[2025-06-05 03:36:12] 2025-06-05 01:36:09,721 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-05 03:36:12] 2025-06-05 01:36:09,724 [wrapper] pilotpid: 1502112
[2025-06-05 03:36:12] 2025-06-05 01:36:09,726 [wrapper] Pilot exit status: 0
[2025-06-05 03:36:12] 2025-06-05 01:36:09,738 [wrapper] pandaids: 6668442626
[2025-06-05 03:36:12] 2025-06-05 01:36:09,813 [wrapper] cleanup supervisor_pilot 1879171 1502113
[2025-06-05 03:36:12] 2025-06-05 01:36:09,816 [wrapper] Test setup, not cleaning
[2025-06-05 03:36:12] 2025-06-05 01:36:09,820 [wrapper] apfmon messages muted
[2025-06-05 03:36:12] 2025-06-05 01:36:09,823 [wrapper] ==== wrapper stdout END ====
[2025-06-05 03:36:12] 2025-06-05 01:36:09,826 [wrapper] ==== wrapper stderr END ====
[2025-06-05 03:36:12]  *** Error codes and diagnostics ***
[2025-06-05 03:36:12]     "exeErrorCode": 0,
[2025-06-05 03:36:12]     "exeErrorDiag": "",
[2025-06-05 03:36:12]     "pilotErrorCode": 0,
[2025-06-05 03:36:12]     "pilotErrorDiag": "",
[2025-06-05 03:36:12]  *** Listing of results directory ***
[2025-06-05 03:36:12] total 427288
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc    495897 May 28 14:42 pilot3.tar.gz
[2025-06-05 03:36:12] -rwx------ 1 boinc boinc     37140 May 28 14:59 runpilot2-wrapper.sh
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc      5111 May 28 14:59 queuedata.json
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc       100 Jun  4 23:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-05 03:36:12] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 23:25 run_atlas
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc       105 Jun  4 23:25 job.xml
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc      6635 Jun  4 23:26 init_data.xml
[2025-06-05 03:36:12] -rw-r--r-- 2 boinc boinc 224663582 Jun  4 23:26 EVNT.44871834._003299.pool.root.1
[2025-06-05 03:36:12] drwxrwx--x 2 boinc boinc      4096 Jun  4 23:26 shared
[2025-06-05 03:36:12] -rw-r--r-- 2 boinc boinc    508874 Jun  4 23:26 input.tar.gz
[2025-06-05 03:36:12] -rw-r--r-- 2 boinc boinc     15093 Jun  4 23:26 start_atlas.sh
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc         0 Jun  4 23:26 boinc_lockfile
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc      2558 Jun  4 23:26 pandaJob.out
[2025-06-05 03:36:12] -rw------- 1 boinc boinc    987032 Jun  4 23:26 agis_schedconf.cvmfs.json
[2025-06-05 03:36:12] drwx------ 4 boinc boinc      4096 Jun  4 23:26 pilot3
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc       528 Jun  5 03:35 boinc_task_state.xml
[2025-06-05 03:36:12] -rw------- 1 boinc boinc 205600306 Jun  5 03:35 HITS.44871837._084548.pool.root.1
[2025-06-05 03:36:12] -rw------- 1 boinc boinc      1035 Jun  5 03:35 memory_monitor_summary.json
[2025-06-05 03:36:12] -rw------- 1 boinc boinc   1598969 Jun  5 03:35 agis_ddmendpoints.agis.ALL.json
[2025-06-05 03:36:12] -rw------- 1 boinc boinc    338311 Jun  5 03:35 log.44871837._084548.job.log.tgz.1
[2025-06-05 03:36:12] -rw------- 1 boinc boinc        95 Jun  5 03:35 pilot_heartbeat.json
[2025-06-05 03:36:12] -rw------- 1 boinc boinc      7725 Jun  5 03:35 heartbeat.json
[2025-06-05 03:36:12] -rw------- 1 boinc boinc      4486 Jun  5 03:36 pilotlog.txt
[2025-06-05 03:36:12] -rw------- 1 boinc boinc   1384848 Jun  5 03:36 log.44871837._084548.job.log.1
[2025-06-05 03:36:12] -rw------- 1 boinc boinc       357 Jun  5 03:36 output.list
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc       620 Jun  5 03:36 runtime_log
[2025-06-05 03:36:12] -rw------- 1 boinc boinc   1740800 Jun  5 03:36 result.tar.gz
[2025-06-05 03:36:12] -rw------- 1 boinc boinc       664 Jun  5 03:36 ufVKDmtYVe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmUWTKDmr7UI6m.diag
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc      9026 Jun  5 03:36 runtime_log.err
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc        26 Jun  5 03:36 wrapper_checkpoint.txt
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc      8192 Jun  5 03:36 boinc_mmap_file
[2025-06-05 03:36:12] -rw-r--r-- 1 boinc boinc     20908 Jun  5 03:36 stderr.txt
[2025-06-05 03:36:13] HITS file was successfully produced:
[2025-06-05 03:36:13] -rw------- 1 boinc boinc 205600306 Jun  5 03:35 shared/HITS.pool.root.1
[2025-06-05 03:36:13]  *** Contents of shared directory: ***
[2025-06-05 03:36:13] total 422408
[2025-06-05 03:36:13] -rw-r--r-- 2 boinc boinc 224663582 Jun  4 23:26 ATLAS.root_0
[2025-06-05 03:36:13] -rw-r--r-- 2 boinc boinc    508874 Jun  4 23:26 input.tar.gz
[2025-06-05 03:36:13] -rw-r--r-- 2 boinc boinc     15093 Jun  4 23:26 start_atlas.sh
[2025-06-05 03:36:13] -rw------- 1 boinc boinc 205600306 Jun  5 03:35 HITS.pool.root.1
[2025-06-05 03:36:13] -rw------- 1 boinc boinc   1740800 Jun  5 03:36 result.tar.gz
03:36:14 (1498383): run_atlas exited; CPU time 58279.644032
03:36:14 (1498383): called boinc_finish(0)

</stderr_txt>
]]>

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