Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:29:14 (732814): wrapper (7.7.26015): starting
14:29:14 (732814): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 14:29:14] Arguments: --nthreads 4
[2025-06-03 14:29:14] Threads: 4
[2025-06-03 14:29:14] Checking for CVMFS
[2025-06-03 14:29:14] No cvmfs_config command found, will try listing directly
[2025-06-03 14:29:14] CVMFS is ok
[2025-06-03 14:29:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 14:29:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 14:29:14] Further information can be found at the LHC@home message board.
[2025-06-03 14:29:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 14:29:14] Checking for apptainer binary...
[2025-06-03 14:29:14] which: no apptainer in ((null))
[2025-06-03 14:29:14] apptainer is not installed, using version from CVMFS
[2025-06-03 14:29:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:29:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut33.grid.cesnet.cz
[2025-06-03 14:29:14] apptainer works
[2025-06-03 14:29:14] Set ATHENA_PROC_NUMBER=4
[2025-06-03 14:29:14] Set ATHENA_CORE_NUMBER=4
[2025-06-03 14:29:14] Starting ATLAS job with PandaID=6668327188
[2025-06-03 14:29:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 18:46:09]  *** The last 200 lines of the pilot log: ***
[2025-06-03 18:46:09] 2025-06-03 16:28:41,605 | INFO     | total number of processed events: 400 (read)
[2025-06-03 18:46:09] 2025-06-03 16:28:41,609 | INFO     | executing command: lscpu
[2025-06-03 18:46:09] 2025-06-03 16:28:41,657 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 18:46:09] 2025-06-03 16:28:41,846 | INFO     | number of running child processes to parent process 743505: 1
[2025-06-03 18:46:09] 2025-06-03 16:28:41,846 | INFO     | maximum number of monitored processes: 6
[2025-06-03 18:46:09] 2025-06-03 16:28:44,349 | INFO     | monitor loop #1053: job 0:6668327188 is in state 'finished'
[2025-06-03 18:46:09] 2025-06-03 16:28:44,350 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 18:46:09] 2025-06-03 16:28:45,379 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 18:46:09] 2025-06-03 16:28:45,379 | INFO     | using path: /scratch/boinc/var/slot32/slots/0/PanDA_Pilot-6668327188/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 18:46:09] 2025-06-03 16:28:45,380 | INFO     | extracted standard info from prmon json
[2025-06-03 18:46:09] 2025-06-03 16:28:45,380 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 18:46:09] 2025-06-03 16:28:45,380 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 18:46:09] 2025-06-03 16:28:45,381 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 18:46:09] 2025-06-03 16:28:45,381 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 18:46:09] 2025-06-03 16:28:45,386 | INFO     | fitting pss+swap vs Time
[2025-06-03 18:46:09] 2025-06-03 16:28:45,387 | INFO     | sum of square deviations: 4024149870.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,389 | INFO     | sum of deviations: -24681161383.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,389 | INFO     | mean x: 1748960928.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,389 | INFO     | mean y: 2374140.906382979
[2025-06-03 18:46:09] 2025-06-03 16:28:45,390 | INFO     | -- intersect: 10729207959.481197
[2025-06-03 18:46:09] 2025-06-03 16:28:45,390 | INFO     | intersect: 10729207959.481197
[2025-06-03 18:46:09] 2025-06-03 16:28:45,390 | INFO     | chi2: 1.7288596516931396
[2025-06-03 18:46:09] 2025-06-03 16:28:45,391 | INFO     | sum of square deviations: 3772712597.5
[2025-06-03 18:46:09] 2025-06-03 16:28:45,393 | INFO     | sum of deviations: -23911143072.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,393 | INFO     | mean x: 1748960775.5
[2025-06-03 18:46:09] 2025-06-03 16:28:45,393 | INFO     | mean y: 2374608.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,393 | INFO     | -- intersect: 11087144584.384764
[2025-06-03 18:46:09] 2025-06-03 16:28:45,393 | INFO     | intersect: 11087144584.384764
[2025-06-03 18:46:09] 2025-06-03 16:28:45,394 | INFO     | chi2: 1.7271140985588191
[2025-06-03 18:46:09] 2025-06-03 16:28:45,394 | INFO     | current chi2=1.7271140985588191 (change=0.10096557766334394 %)
[2025-06-03 18:46:09] 2025-06-03 16:28:45,394 | INFO     | right removable region: 229
[2025-06-03 18:46:09] 2025-06-03 16:28:45,395 | INFO     | sum of square deviations: 3772712597.5
[2025-06-03 18:46:09] 2025-06-03 16:28:45,396 | INFO     | sum of deviations: -58527528907.00001
[2025-06-03 18:46:09] 2025-06-03 16:28:45,397 | INFO     | mean x: 1748961080.5
[2025-06-03 18:46:09] 2025-06-03 16:28:45,397 | INFO     | mean y: 2394464.0956521737
[2025-06-03 18:46:09] 2025-06-03 16:28:45,397 | INFO     | -- intersect: 27134694513.67072
[2025-06-03 18:46:09] 2025-06-03 16:28:45,397 | INFO     | intersect: 27134694513.67072
[2025-06-03 18:46:09] 2025-06-03 16:28:45,398 | INFO     | chi2: 0.23809308243127708
[2025-06-03 18:46:09] 2025-06-03 16:28:45,398 | INFO     | current chi2=0.23809308243127708 (change=86.22831632410976 %)
[2025-06-03 18:46:09] 2025-06-03 16:28:45,398 | INFO     | sum of square deviations: 3531973200.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,400 | INFO     | sum of deviations: -50795484398.99999
[2025-06-03 18:46:09] 2025-06-03 16:28:45,400 | INFO     | mean x: 1748961233.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,400 | INFO     | mean y: 2389549.6844444443
[2025-06-03 18:46:09] 2025-06-03 16:28:45,401 | INFO     | -- intersect: 25155279448.539646
[2025-06-03 18:46:09] 2025-06-03 16:28:45,401 | INFO     | intersect: 25155279448.539646
[2025-06-03 18:46:09] 2025-06-03 16:28:45,401 | INFO     | chi2: 0.22348556895672914
[2025-06-03 18:46:09] 2025-06-03 16:28:45,401 | INFO     | current chi2=0.22348556895672914 (change=6.135211206215637 %)
[2025-06-03 18:46:09] 2025-06-03 16:28:45,402 | INFO     | left removable region: 20
[2025-06-03 18:46:09] 2025-06-03 16:28:45,402 | INFO     | sum of square deviations: 2830787960.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,404 | INFO     | sum of deviations: -26080448374.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,404 | INFO     | mean x: 1748961355.0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,404 | INFO     | mean y: 2373928.95215311
[2025-06-03 18:46:09] 2025-06-03 16:28:45,404 | INFO     | -- intersect: 16115801346.242208
[2025-06-03 18:46:09] 2025-06-03 16:28:45,404 | INFO     | intersect: 16115801346.242208
[2025-06-03 18:46:09] 2025-06-03 16:28:45,405 | INFO     | chi2: 0.09537666193785103
[2025-06-03 18:46:09] 2025-06-03 16:28:45,405 | INFO     | -- intersect: 16115801346.242208
[2025-06-03 18:46:09] 2025-06-03 16:28:45,405 | INFO     | current memory leak: -9.21 B/s (using 209 data points, chi2=0.10)
[2025-06-03 18:46:09] 2025-06-03 16:28:45,406 | INFO     | ..............................
[2025-06-03 18:46:09] 2025-06-03 16:28:45,406 | INFO     | . Timing measurements:
[2025-06-03 18:46:09] 2025-06-03 16:28:45,406 | INFO     | . get job = 0 s
[2025-06-03 18:46:09] 2025-06-03 16:28:45,406 | INFO     | . initial setup = 1 s
[2025-06-03 18:46:09] 2025-06-03 16:28:45,406 | INFO     | . payload setup = 6 s
[2025-06-03 18:46:09] 2025-06-03 16:28:45,407 | INFO     | . stage-in = 0 s
[2025-06-03 18:46:09] 2025-06-03 16:28:45,407 | INFO     | . payload execution = 14326 s
[2025-06-03 18:46:09] 2025-06-03 16:28:45,407 | INFO     | . stage-out = 1 s
[2025-06-03 18:46:09] 2025-06-03 16:28:45,407 | INFO     | . log creation = 0 s
[2025-06-03 18:46:09] 2025-06-03 16:28:45,407 | INFO     | ..............................
[2025-06-03 18:46:09] 2025-06-03 16:28:45,991 | INFO     | 
[2025-06-03 18:46:09] 2025-06-03 16:28:45,992 | INFO     | job summary report
[2025-06-03 18:46:09] 2025-06-03 16:28:45,992 | INFO     | --------------------------------------------------
[2025-06-03 18:46:09] 2025-06-03 16:28:45,992 | INFO     | PanDA job id: 6668327188
[2025-06-03 18:46:09] 2025-06-03 16:28:45,992 | INFO     | task id: 44871837
[2025-06-03 18:46:09] 2025-06-03 16:28:45,992 | INFO     | errors: (none)
[2025-06-03 18:46:09] 2025-06-03 16:28:45,992 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 18:46:09] 2025-06-03 16:28:45,992 | INFO     | pilot state: finished 
[2025-06-03 18:46:09] 2025-06-03 16:28:45,992 | INFO     | transexitcode: 0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,993 | INFO     | exeerrorcode: 0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,993 | INFO     | exeerrordiag: 
[2025-06-03 18:46:09] 2025-06-03 16:28:45,993 | INFO     | exitcode: 0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,993 | INFO     | exitmsg: OK
[2025-06-03 18:46:09] 2025-06-03 16:28:45,993 | INFO     | cpuconsumptiontime: 54400 s
[2025-06-03 18:46:09] 2025-06-03 16:28:45,993 | INFO     | nevents: 400
[2025-06-03 18:46:09] 2025-06-03 16:28:45,993 | INFO     | neventsw: 0
[2025-06-03 18:46:09] 2025-06-03 16:28:45,993 | INFO     | pid: 743505
[2025-06-03 18:46:09] 2025-06-03 16:28:45,993 | INFO     | pgrp: 743505
[2025-06-03 18:46:09] 2025-06-03 16:28:45,994 | INFO     | corecount: 4
[2025-06-03 18:46:09] 2025-06-03 16:28:45,994 | INFO     | event service: False
[2025-06-03 18:46:09] 2025-06-03 16:28:45,994 | INFO     | sizes: {0: 2405239, 1: 2405239, 4: 2405473, 12: 2405501, 14336: 2435912, 14338: 2444875, 14342: 2445059, 14345: 2445229}
[2025-06-03 18:46:09] 2025-06-03 16:28:45,994 | INFO     | --------------------------------------------------
[2025-06-03 18:46:09] 2025-06-03 16:28:45,994 | INFO     | 
[2025-06-03 18:46:09] 2025-06-03 16:28:45,994 | INFO     | executing command: ls -lF /scratch/boinc/var/slot32/slots/0
[2025-06-03 18:46:09] 2025-06-03 16:28:46,013 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,014 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,014 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,014 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,014 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,014 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,015 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,015 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,015 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,015 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,015 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,015 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,015 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,015 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,015 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,016 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,016 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,016 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 18:46:09] 2025-06-03 16:28:46,016 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,016 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 18:46:09] 2025-06-03 16:28:46,016 | INFO     | job 6668327188 has completed (purged errors)
[2025-06-03 18:46:09] 2025-06-03 16:28:46,016 | INFO     | overall cleanup function is called
[2025-06-03 18:46:09] 2025-06-03 16:28:47,024 | INFO     | --- collectZombieJob: --- 10, [743505]
[2025-06-03 18:46:09] 2025-06-03 16:28:47,025 | INFO     | zombie collector waiting for pid 743505
[2025-06-03 18:46:09] 2025-06-03 16:28:47,025 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 18:46:09] 2025-06-03 16:28:47,025 | INFO     | collected zombie processes
[2025-06-03 18:46:09] 2025-06-03 16:28:47,025 | INFO     | will attempt to kill all subprocesses of pid=743505
[2025-06-03 18:46:09] 2025-06-03 16:28:47,309 | INFO     | process IDs to be killed: [743505] (in reverse order)
[2025-06-03 18:46:09] 2025-06-03 16:28:47,395 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 18:46:09] 2025-06-03 16:28:47,396 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 18:46:09] 2025-06-03 16:28:47,404 | INFO     | did not find any defunct processes belonging to 743505
[2025-06-03 18:46:09] 2025-06-03 16:28:47,411 | INFO     | did not find any defunct processes belonging to 743505
[2025-06-03 18:46:09] 2025-06-03 16:28:47,412 | INFO     | ready for new job
[2025-06-03 18:46:09] 2025-06-03 16:28:47,412 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 18:46:09] 2025-06-03 16:28:47,414 | INFO     | **************************************
[2025-06-03 18:46:09] 2025-06-03 16:28:47,414 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 18:46:09] 2025-06-03 16:28:47,414 | INFO     | **************************************
[2025-06-03 18:46:09] 2025-06-03 16:28:47,414 | INFO     | 
[2025-06-03 18:46:09] 2025-06-03 16:28:47,417 | INFO     | architecture information:
[2025-06-03 18:46:09] 2025-06-03 16:28:47,417 | INFO     | executing command: cat /etc/os-release
[2025-06-03 18:46:09] 2025-06-03 16:28:47,433 | INFO     | cat /etc/os-release:
[2025-06-03 18:46:09] NAME="CentOS Linux"
[2025-06-03 18:46:09] VERSION="7 (Core)"
[2025-06-03 18:46:09] ID="centos"
[2025-06-03 18:46:09] ID_LIKE="rhel fedora"
[2025-06-03 18:46:09] VERSION_ID="7"
[2025-06-03 18:46:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 18:46:09] ANSI_COLOR="0;31"
[2025-06-03 18:46:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 18:46:09] HOME_URL="https://www.centos.org/"
[2025-06-03 18:46:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 18:46:09] 
[2025-06-03 18:46:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 18:46:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 18:46:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 18:46:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 18:46:09] 
[2025-06-03 18:46:09] 2025-06-03 16:28:47,434 | INFO     | **************************************
[2025-06-03 18:46:09] 2025-06-03 16:28:47,936 | INFO     | executing command: df -mP /scratch/boinc/var/slot32/slots/0
[2025-06-03 18:46:09] 2025-06-03 16:28:47,950 | INFO     | sufficient remaining disk space (1642951868416 B)
[2025-06-03 18:46:09] 2025-06-03 16:28:47,951 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 18:46:09] 2025-06-03 16:28:47,951 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 18:46:09] 2025-06-03 16:28:47,951 | INFO     | update_server=False
[2025-06-03 18:46:09] 2025-06-03 16:28:47,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 18:46:09] 2025-06-03 16:28:47,952 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 18:46:09] 2025-06-03 16:28:47,952 | INFO     | aborting loop
[2025-06-03 18:46:09] 2025-06-03 16:28:47,952 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 18:46:09] 2025-06-03 16:28:48,500 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 18:46:09] 2025-06-03 16:28:48,500 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 18:46:09] 2025-06-03 16:28:48,500 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 18:46:09] 2025-06-03 16:28:48,526 | INFO     | all payload control threads have been joined
[2025-06-03 18:46:09] 2025-06-03 16:28:48,736 | INFO     | all data control threads have been joined
[2025-06-03 18:46:09] 2025-06-03 16:28:48,957 | INFO     | [job] retrieve thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:48,957 | INFO     | [job] job monitor thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:49,008 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 18:46:09] 2025-06-03 16:28:49,227 | INFO     | all job control threads have been joined
[2025-06-03 18:46:09] 2025-06-03 16:28:49,273 | INFO     | [payload] failed_post thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:49,295 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:49,413 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:49,507 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:49,532 | INFO     | [payload] control thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:49,741 | INFO     | [data] control thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:49,996 | INFO     | [job] validate thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:50,233 | INFO     | [job] control thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:50,293 | INFO     | [payload] validate_post thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:50,371 | INFO     | [data] copytool_in thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:50,532 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 18:46:09] 2025-06-03 16:28:51,013 | INFO     | [data] copytool_out thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:51,538 | INFO     | [job] queue monitor thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:51,957 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:28:58,519 | INFO     | job.realtimelogging is not enabled
[2025-06-03 18:46:09] 2025-06-03 16:28:59,524 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 18:46:09] 2025-06-03 16:29:00,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23240953165632)>', '<ExcThread(monitor, started 23240713926400)>']
[2025-06-03 18:46:09] 2025-06-03 16:29:01,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 18:46:09] 2025-06-03 16:29:01,562 | INFO     | [monitor] control thread has ended
[2025-06-03 18:46:09] 2025-06-03 16:29:05,782 | INFO     | all workflow threads have been joined
[2025-06-03 18:46:09] 2025-06-03 16:29:05,783 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 18:46:09] 2025-06-03 16:29:05,783 | INFO     | traces error code: 0
[2025-06-03 18:46:09] 2025-06-03 16:29:05,783 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 18:46:09] 2025-06-03 16:29:05,903 [wrapper] ==== pilot stdout END ====
[2025-06-03 18:46:09] 2025-06-03 16:29:05,906 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 18:46:09] 2025-06-03 16:29:05,908 [wrapper] pilotpid: 736435
[2025-06-03 18:46:09] 2025-06-03 16:29:05,910 [wrapper] Pilot exit status: 0
[2025-06-03 18:46:09] 2025-06-03 16:29:05,919 [wrapper] pandaids: 6668327188
[2025-06-03 18:46:09] 2025-06-03 16:29:05,967 [wrapper] cleanup supervisor_pilot  986209 736436
[2025-06-03 18:46:09] 2025-06-03 16:29:05,970 [wrapper] Test setup, not cleaning
[2025-06-03 18:46:09] 2025-06-03 16:29:05,972 [wrapper] apfmon messages muted
[2025-06-03 18:46:09] 2025-06-03 16:29:05,974 [wrapper] ==== wrapper stdout END ====
[2025-06-03 18:46:09] 2025-06-03 16:29:05,977 [wrapper] ==== wrapper stderr END ====
[2025-06-03 18:46:09]  *** Error codes and diagnostics ***
[2025-06-03 18:46:09]     "exeErrorCode": 0,
[2025-06-03 18:46:09]     "exeErrorDiag": "",
[2025-06-03 18:46:09]     "pilotErrorCode": 0,
[2025-06-03 18:46:09]     "pilotErrorDiag": "",
[2025-06-03 18:46:09]  *** Listing of results directory ***
[2025-06-03 18:46:09] total 424460
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc    495897 May 28 12:54 pilot3.tar.gz
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc      5111 May 28 12:58 queuedata.json
[2025-06-03 18:46:09] -rwx------ 1 boinc boinc     37140 May 28 12:58 runpilot2-wrapper.sh
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc       100 Jun  3 14:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 18:46:09] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 14:29 run_atlas
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc       105 Jun  3 14:29 job.xml
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc      6421 Jun  3 14:29 init_data.xml
[2025-06-03 18:46:09] -rw-r--r-- 2 boinc boinc 225556483 Jun  3 14:29 EVNT.44871834._003251.pool.root.1
[2025-06-03 18:46:09] drwxrwx--x 2 boinc boinc      4096 Jun  3 14:29 shared
[2025-06-03 18:46:09] -rw-r--r-- 2 boinc boinc    508880 Jun  3 14:29 input.tar.gz
[2025-06-03 18:46:09] -rw-r--r-- 2 boinc boinc     15093 Jun  3 14:29 start_atlas.sh
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc         0 Jun  3 14:29 boinc_lockfile
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc      2556 Jun  3 14:29 pandaJob.out
[2025-06-03 18:46:09] -rw------- 1 boinc boinc    982666 Jun  3 14:29 agis_schedconf.cvmfs.json
[2025-06-03 18:46:09] drwx------ 4 boinc boinc      4096 Jun  3 14:29 pilot3
[2025-06-03 18:46:09] -rw------- 1 boinc boinc 201953001 Jun  3 18:27 HITS.44871837._083276.pool.root.1
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc       529 Jun  3 18:28 boinc_task_state.xml
[2025-06-03 18:46:09] -rw------- 1 boinc boinc        95 Jun  3 18:28 pilot_heartbeat.json
[2025-06-03 18:46:09] -rw------- 1 boinc boinc      1039 Jun  3 18:28 memory_monitor_summary.json
[2025-06-03 18:46:09] -rw------- 1 boinc boinc   1603667 Jun  3 18:28 agis_ddmendpoints.agis.ALL.json
[2025-06-03 18:46:09] -rw------- 1 boinc boinc    323747 Jun  3 18:28 log.44871837._083276.job.log.tgz.1
[2025-06-03 18:46:09] -rw------- 1 boinc boinc      7728 Jun  3 18:28 heartbeat.json
[2025-06-03 18:46:09] -rw------- 1 boinc boinc      4436 Jun  3 18:29 pilotlog.txt
[2025-06-03 18:46:09] -rw------- 1 boinc boinc   1330961 Jun  3 18:29 log.44871837._083276.job.log.1
[2025-06-03 18:46:09] -rw------- 1 boinc boinc       357 Jun  3 18:29 output.list
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc       620 Jun  3 18:29 runtime_log
[2025-06-03 18:46:09] -rw------- 1 boinc boinc   1669120 Jun  3 18:29 result.tar.gz
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc      9026 Jun  3 18:29 runtime_log.err
[2025-06-03 18:46:09] -rw------- 1 boinc boinc       664 Jun  3 18:29 QbPNDmLfTe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXzbKDmIPnOUo.diag
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc        27 Jun  3 18:46 wrapper_checkpoint.txt
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc      8192 Jun  3 18:46 boinc_mmap_file
[2025-06-03 18:46:09] -rw-r--r-- 1 boinc boinc     20828 Jun  3 18:46 stderr.txt
[2025-06-03 18:46:09] HITS file was successfully produced:
[2025-06-03 18:46:09] -rw------- 1 boinc boinc 201953001 Jun  3 18:27 shared/HITS.pool.root.1
[2025-06-03 18:46:09]  *** Contents of shared directory: ***
[2025-06-03 18:46:09] total 419648
[2025-06-03 18:46:09] -rw-r--r-- 2 boinc boinc 225556483 Jun  3 14:29 ATLAS.root_0
[2025-06-03 18:46:09] -rw-r--r-- 2 boinc boinc    508880 Jun  3 14:29 input.tar.gz
[2025-06-03 18:46:09] -rw-r--r-- 2 boinc boinc     15093 Jun  3 14:29 start_atlas.sh
[2025-06-03 18:46:09] -rw------- 1 boinc boinc 201953001 Jun  3 18:27 HITS.pool.root.1
[2025-06-03 18:46:09] -rw------- 1 boinc boinc   1669120 Jun  3 18:29 result.tar.gz
18:46:11 (732814): run_atlas exited; CPU time 54932.040896
18:46:11 (732814): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN