Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-28 23:04:47 (12872): Detected: vboxwrapper 26206
2025-05-28 23:04:47 (12872): Detected: BOINC client v8.2.1
2025-05-28 23:04:48 (12872): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-05-28 23:04:48 (12872): Successfully copied 'init_data.xml' to the shared directory.
2025-05-28 23:04:48 (12872): Create VM. (boinc_b6972b77e6cedf8a, slot#1)
2025-05-28 23:04:49 (12872): Setting Memory Size for VM. (4096MB)
2025-05-28 23:04:49 (12872): Setting CPU Count for VM. (1)
2025-05-28 23:04:50 (12872): Setting Chipset Options for VM.
2025-05-28 23:04:50 (12872): Setting Graphics Controller Options for VM.
2025-05-28 23:04:50 (12872): Setting Boot Options for VM.
2025-05-28 23:04:50 (12872): Setting Network Configuration for NAT.
2025-05-28 23:04:51 (12872): Enabling VM Network Access.
2025-05-28 23:04:51 (12872): Disabling USB Support for VM.
2025-05-28 23:04:51 (12872): Disabling COM Port Support for VM.
2025-05-28 23:04:51 (12872): Disabling LPT Port Support for VM.
2025-05-28 23:04:52 (12872): Disabling Audio Support for VM.
2025-05-28 23:04:52 (12872): Disabling Clipboard Support for VM.
2025-05-28 23:04:52 (12872): Disabling Drag and Drop Support for VM.
2025-05-28 23:04:52 (12872): Adding storage controller(s) to VM.
2025-05-28 23:04:53 (12872): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-28 23:04:53 (12872): Adding VirtualBox Guest Additions to VM.
2025-05-28 23:04:53 (12872): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-28 23:04:54 (12872): forwarding host port 55779 to guest port 80
2025-05-28 23:04:54 (12872): Enabling remote desktop for VM.
2025-05-28 23:04:54 (12872): Required extension pack not installed, remote desktop not enabled.
2025-05-28 23:04:54 (12872): Enabling shared directory for VM.
2025-05-28 23:04:55 (12872): Starting VM using VBoxManage interface. (boinc_b6972b77e6cedf8a, slot#1)
2025-05-28 23:05:01 (12872): Successfully started VM. (PID = '22540')
2025-05-28 23:05:01 (12872): Reporting VM Process ID to BOINC.
2025-05-28 23:05:01 (12872): Guest Log: BIOS: VirtualBox 7.1.8
2025-05-28 23:05:01 (12872): Guest Log: CPUID EDX: 0x178bfbff
2025-05-28 23:05:01 (12872): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-28 23:05:01 (12872): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-28 23:05:01 (12872): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-28 23:05:01 (12872): Detected: Web Application Enabled (http://localhost:55779)
2025-05-28 23:05:01 (12872): Preference change detected
2025-05-28 23:05:01 (12872): Setting CPU throttle for VM. (100%)
2025-05-28 23:05:01 (12872): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-28 23:05:03 (12872): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-28 23:05:03 (12872): Guest Log: BIOS: Booting from Hard Disk...
2025-05-28 23:05:06 (12872): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-28 23:05:06 (12872): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-28 23:05:06 (12872): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-28 23:05:12 (12872): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-28 23:05:12 (12872): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-28 23:05:31 (12872): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-28 23:05:31 (12872): Guest Log: 00:00:00.000218 main     Log opened 2025-05-28T23:05:29.516192000Z
2025-05-28 23:05:31 (12872): Guest Log: 00:00:00.000405 main     OS Product: Linux
2025-05-28 23:05:31 (12872): Guest Log: 00:00:00.000455 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-28 23:05:31 (12872): Guest Log: 00:00:00.000495 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-28 23:05:31 (12872): Guest Log: 00:00:00.000534 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-28 23:05:31 (12872): Guest Log: 00:00:00.000535 main     Process ID: 1254
2025-05-28 23:05:31 (12872): Guest Log: 00:00:00.000536 main     Package type: LINUX_64BITS_GENERIC
2025-05-28 23:05:31 (12872): Guest Log: 00:00:00.004360 main     5.2.32 r132073 started. Verbose level = 0
2025-05-28 23:05:31 (12872): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-28 23:05:31 (12872): Guest Log: [INFO] Mounting shared directory
2025-05-28 23:05:31 (12872): Guest Log: [INFO] Checking for init_data.xml
2025-05-28 23:05:38 (12872): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-28 23:05:38 (12872): Guest Log: [INFO] Detected branch: prod
2025-05-28 23:05:39 (12872): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-28 23:05:39 (12872): Guest Log: Copying input files
2025-05-28 23:05:41 (12872): Guest Log: 00:00:10.045513 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 745 173 000ns (GuestNow=1 748 466 340 813 618 000 ns GuestLast=1 748 473 529 558 791 000 ns fSetTimeLastLoop=true )
2025-05-28 23:05:41 (12872): Guest Log: Copied input files into RunAtlas.
2025-05-28 23:05:41 (12872): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-05-28 23:05:49 (12872): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-28 23:05:49 (12872): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-28 23:05:49 (12872): Guest Log: 2.6.3.0 1527 0 31568 146530 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-05-28 23:05:50 (12872): Guest Log: copied the webapp to /var/www
2025-05-28 23:05:50 (12872): Guest Log: core_number=1
2025-05-28 23:05:50 (12872): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-28 23:05:50 (12872): Guest Log:  *** Starting ATLAS job. (PandaID=6667729897 taskID=44871837) ***
2025-05-29 00:45:07 (12872): Status Report: Elapsed Time: '6000.000000'
2025-05-29 00:45:07 (12872): Status Report: CPU Time: '5563.000000'
2025-05-29 02:25:12 (12872): Status Report: Elapsed Time: '12000.000000'
2025-05-29 02:25:12 (12872): Status Report: CPU Time: '11542.359375'
2025-05-29 04:05:17 (12872): Status Report: Elapsed Time: '18000.000000'
2025-05-29 04:05:17 (12872): Status Report: CPU Time: '17522.000000'
2025-05-29 05:45:23 (12872): Status Report: Elapsed Time: '24000.000000'
2025-05-29 05:45:23 (12872): Status Report: CPU Time: '23501.515625'
2025-05-29 07:25:28 (12872): Status Report: Elapsed Time: '30000.000000'
2025-05-29 07:25:28 (12872): Status Report: CPU Time: '29478.078125'
2025-05-29 09:05:33 (12872): Status Report: Elapsed Time: '36000.000000'
2025-05-29 09:05:34 (12872): Status Report: CPU Time: '35456.781250'
2025-05-29 10:45:39 (12872): Status Report: Elapsed Time: '42000.000000'
2025-05-29 10:45:39 (12872): Status Report: CPU Time: '41437.921875'
2025-05-29 12:25:44 (12872): Status Report: Elapsed Time: '48000.000000'
2025-05-29 12:25:44 (12872): Status Report: CPU Time: '47420.093750'
2025-05-29 14:05:50 (12872): Status Report: Elapsed Time: '54000.000000'
2025-05-29 14:05:50 (12872): Status Report: CPU Time: '53401.343750'
2025-05-29 15:45:55 (12872): Status Report: Elapsed Time: '60000.000000'
2025-05-29 15:45:55 (12872): Status Report: CPU Time: '59381.250000'
2025-05-29 17:26:01 (12872): Status Report: Elapsed Time: '66000.000000'
2025-05-29 17:26:01 (12872): Status Report: CPU Time: '65362.296875'
2025-05-29 17:46:15 (12872): Guest Log:  *** Job finished ***
2025-05-29 17:46:15 (12872): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:04,781 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:04,892 | INFO     | [data] copytool_out thread has finished
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:08,786 | INFO     | [data] queue_monitor thread has finished
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:09,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139969207834432)>', '<ExcThread(monitor, started 139968546596608)>']
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:09,465 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:09,465 | INFO     | [monitor] control thread has ended
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,154 | INFO     | all workflow threads have been joined
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,155 | INFO     | end of generic workflow (traces error code: 0)
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,155 | INFO     | traces error code: 0
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,343 [wrapper] ==== pilot stdout END ====
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,348 [wrapper] ==== wrapper stdout RESUME ====
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,354 [wrapper] pilotpid: 5783
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,361 [wrapper] Pilot exit status: 0
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,392 [wrapper] pandaids: 6667729897
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,429 [wrapper] cleanup supervisor_pilot 31077 5784
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,433 [wrapper] Test setup, not cleaning
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,438 [wrapper] apfmon messages muted
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,444 [wrapper] ==== wrapper stdout END ====
2025-05-29 17:46:15 (12872): Guest Log: 2025-05-29 15:46:14,448 [wrapper] ==== wrapper stderr END ====
2025-05-29 17:46:15 (12872): Guest Log:  *** Error codes and diagnostics ***
2025-05-29 17:46:15 (12872): Guest Log:     "exeErrorCode": 0,
2025-05-29 17:46:15 (12872): Guest Log:     "exeErrorDiag": "",
2025-05-29 17:46:15 (12872): Guest Log:     "pilotErrorCode": 0,
2025-05-29 17:46:15 (12872): Guest Log:     "pilotErrorDiag": "",
2025-05-29 17:46:15 (12872): Guest Log:  *** Listing of results directory ***
2025-05-29 17:46:15 (12872): Guest Log: total 216608
2025-05-29 17:46:15 (12872): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 22:42 pilot3.tar.gz
2025-05-29 17:46:15 (12872): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 23:01 queuedata.json
2025-05-29 17:46:15 (12872): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 23:02 runpilot2-wrapper.sh
2025-05-29 17:46:15 (12872): Guest Log: -rwxr-xr-x. 1 atlas atlas      9394 May 28 21:05 init_data.xml
2025-05-29 17:46:15 (12872): Guest Log: -rwxr-xr-x. 1 atlas atlas    508889 May 28 21:05 input.tar.gz
2025-05-29 17:46:15 (12872): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 28 21:05 start_atlas.sh
2025-05-29 17:46:15 (12872): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 28 21:05 EVNT.44871834._001537.pool.root.1 -> /data/./ATLAS.root_0
2025-05-29 17:46:15 (12872): Guest Log: -rw-r--r--. 1 atlas atlas      2556 May 28 21:05 pandaJob.out
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas    993541 May 28 21:06 agis_schedconf.cvmfs.json
2025-05-29 17:46:15 (12872): Guest Log: drwx------. 4 atlas atlas      4096 May 28 21:06 pilot3
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas 205018483 May 29 15:44 HITS.44871837._074709.pool.root.1
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas        95 May 29 15:45 pilot_heartbeat.json
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas      1021 May 29 15:45 memory_monitor_summary.json
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas   1603667 May 29 15:45 agis_ddmendpoints.agis.ALL.json
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas    730252 May 29 15:45 log.44871837._074709.job.log.tgz.1
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas      7677 May 29 15:45 heartbeat.json
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas      4413 May 29 15:46 pilotlog.txt
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas   5773031 May 29 15:46 log.44871837._074709.job.log.1
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas       357 May 29 15:46 output.list
2025-05-29 17:46:15 (12872): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 29 15:46 runtime_log
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas   6522880 May 29 15:46 result.tar.gz
2025-05-29 17:46:15 (12872): Guest Log: -rw-r--r--. 1 atlas atlas      8459 May 29 15:46 runtime_log.err
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas       656 May 29 15:46 kt5NDmPUIe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnaaKDmJ6c0nm.diag
2025-05-29 17:46:15 (12872): Guest Log: Looking for outputfile HITS.44871837._074709.pool.root.1
2025-05-29 17:46:15 (12872): Guest Log: HITS file was successfully produced
2025-05-29 17:46:15 (12872): Guest Log: -rw-------. 1 atlas atlas 205018483 May 29 15:44 /home/atlas/RunAtlas/HITS.44871837._074709.pool.root.1
2025-05-29 17:46:17 (12872): Guest Log: Successfully finished the ATLAS job!
2025-05-29 17:46:17 (12872): Guest Log: Copying the results back to the shared directory!
2025-05-29 17:46:17 (12872): Guest Log:  *** Contents of shared directory: ***
2025-05-29 17:46:17 (12872): Guest Log: total 426784
2025-05-29 17:46:17 (12872): Guest Log: -rwxrwxrwx. 1 root root 224937227 May 28 21:04 ATLAS.root_0
2025-05-29 17:46:17 (12872): Guest Log: -rwxrwxrwx. 1 root root 205018483 May 29 15:46 HITS.pool.root.1
2025-05-29 17:46:17 (12872): Guest Log: -rwxrwxrwx. 1 root root      9394 May 28 21:04 init_data.xml
2025-05-29 17:46:17 (12872): Guest Log: -rwxrwxrwx. 1 root root    508889 May 28 19:46 input.tar.gz
2025-05-29 17:46:17 (12872): Guest Log: -rwxrwxrwx. 1 root root   6522880 May 29 15:46 result.tar.gz
2025-05-29 17:46:17 (12872): Guest Log: -rwxrwxrwx. 1 root root     15093 May 28 19:46 start_atlas.sh
2025-05-29 17:46:17 (12872): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-29 17:46:17 (12872): VM Completion File Detected.
2025-05-29 17:46:17 (12872): Powering off VM.
2025-05-29 17:46:18 (12872): Successfully stopped VM.
2025-05-29 17:46:18 (12872): Deregistering VM. (boinc_b6972b77e6cedf8a, slot#1)
2025-05-29 17:46:18 (12872): Removing network bandwidth throttle group from VM.
2025-05-29 17:46:18 (12872): Removing VM from VirtualBox.
17:46:23 (12872): called boinc_finish(0)

</stderr_txt>
]]>

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