Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
13:08:24 (3498523): wrapper (7.7.26015): starting
13:08:24 (3498523): wrapper: running run_atlas (--nthreads 4)
[2025-06-02 13:08:24] Arguments: --nthreads 4
[2025-06-02 13:08:24] Threads: 4
[2025-06-02 13:08:24] Checking for CVMFS
[2025-06-02 13:08:24] No cvmfs_config command found, will try listing directly
[2025-06-02 13:08:24] CVMFS is ok
[2025-06-02 13:08:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 13:08:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 13:08:24] Further information can be found at the LHC@home message board.
[2025-06-02 13:08:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 13:08:24] Checking for apptainer binary...
[2025-06-02 13:08:24] which: no apptainer in ((null))
[2025-06-02 13:08:24] apptainer is not installed, using version from CVMFS
[2025-06-02 13:08:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 13:08:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-06-02 13:08:24] apptainer works
[2025-06-02 13:08:24] Set ATHENA_PROC_NUMBER=4
[2025-06-02 13:08:24] Set ATHENA_CORE_NUMBER=4
[2025-06-02 13:08:24] Starting ATLAS job with PandaID=6668440868
[2025-06-02 13:08:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:15:09 (340135): wrapper (7.7.26015): starting
01:15:09 (340135): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 01:15:09] Arguments: --nthreads 4
[2025-06-03 01:15:09] Threads: 4
[2025-06-03 01:15:09] This job has been restarted, cleaning up previous attempt
[2025-06-03 01:15:09] Checking for CVMFS
[2025-06-03 01:15:09] No cvmfs_config command found, will try listing directly
[2025-06-03 01:15:09] CVMFS is ok
[2025-06-03 01:15:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 01:15:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 01:15:09] Further information can be found at the LHC@home message board.
[2025-06-03 01:15:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 01:15:09] Checking for apptainer binary...
[2025-06-03 01:15:09] which: no apptainer in ((null))
[2025-06-03 01:15:09] apptainer is not installed, using version from CVMFS
[2025-06-03 01:15:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 01:15:09] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-06-03 01:15:09] apptainer works
[2025-06-03 01:15:09] Set ATHENA_PROC_NUMBER=4
[2025-06-03 01:15:09] Set ATHENA_CORE_NUMBER=4
[2025-06-03 01:15:09] Starting ATLAS job with PandaID=6668440868
[2025-06-03 01:15:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 01:21:01] Job failed
[2025-06-03 01:21:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 01:21:01] ++ pwd
[2025-06-03 01:21:01] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-06-03 01:21:01] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-06-03 01:21:01] + mv ATLAS.root_0 EVNT.44871834._003285.pool.root.1
[2025-06-03 01:21:01] mv: 'ATLAS.root_0' and 'EVNT.44871834._003285.pool.root.1' are the same file
[2025-06-03 01:21:01] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 01:21:01] + umask 077
[2025-06-03 01:21:01] ++ date +%s
[2025-06-03 01:21:01] + ACCOUNTING_STARTTIME=1748906110
[2025-06-03 01:21:01] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 01:21:01] Detecting resource accounting method available for the job.
[2025-06-03 01:21:01] + JOB_ACCOUNTING=
[2025-06-03 01:21:01] + command -v arc-job-cgroup
[2025-06-03 01:21:01] + '[' -z '' ']'
[2025-06-03 01:21:01] + GNU_TIME=/usr/bin/time
[2025-06-03 01:21:01] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 01:21:01] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 01:21:01] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 01:21:01] + /usr/bin/time --version
[2025-06-03 01:21:01] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 01:21:01] GNU time found and will be used for job accounting.
[2025-06-03 01:21:01] + JOB_ACCOUNTING=gnutime
[2025-06-03 01:21:01] + '[' -z gnutime ']'
[2025-06-03 01:21:01] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 01:21:01] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 01:21:01] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668440868.out
[2025-06-03 01:21:01] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668440868.out
[2025-06-03 01:21:01] + export PILOT_NOKILL=YES
[2025-06-03 01:21:01] + PILOT_NOKILL=YES
[2025-06-03 01:21:01] + export GRID_GLOBAL_JOBID=UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm
[2025-06-03 01:21:01] + GRID_GLOBAL_JOBID=UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm
[2025-06-03 01:21:01] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm
[2025-06-03 01:21:01] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm
[2025-06-03 01:21:01] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 01:21:01] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 01:21:01] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 01:21:01] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 01:21:01] ++ pwd
[2025-06-03 01:21:01] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot36/slots/0
[2025-06-03 01:21:01] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 01:21:01] ++ pwd
[2025-06-03 01:21:01] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot36/slots/0/log.44871837._084197.job.log.1
[2025-06-03 01:21:01] ++ pwd
[2025-06-03 01:21:01] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot36/slots/0/log.44871837._084197.job.log.1
[2025-06-03 01:21:01] ++ pwd
[2025-06-03 01:21:01] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0.diag
[2025-06-03 01:21:01] + '[' '!' -z '' ']'
[2025-06-03 01:21:01] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 01:21:01] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 01:21:01] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 01:21:01] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 01:21:01] + '[' '!' -z '' ']'
[2025-06-03 01:21:01] + '[' -z yes ']'
[2025-06-03 01:21:01] ++ pwd
[2025-06-03 01:21:01] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag
[2025-06-03 01:21:01] + runtimeenvironments=
[2025-06-03 01:21:01] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 01:21:01] + RTE_function_0 1
[2025-06-03 01:21:01] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 01:21:01] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 01:21:01] + export BOINC_APP=ATLAS
[2025-06-03 01:21:01] + BOINC_APP=ATLAS
[2025-06-03 01:21:01] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 01:21:01] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 01:21:01] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 01:21:01] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 01:21:01] + '[' -z 1 ']'
[2025-06-03 01:21:01] + '[' 1 == 1 ']'
[2025-06-03 01:21:01] + shift
[2025-06-03 01:21:01] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-06-03 01:21:01] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-06-03 01:21:01] + '[' 0 -ne 0 ']'
[2025-06-03 01:21:01] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 01:21:01] + '[' -f /etc/os-release ']'
[2025-06-03 01:21:01] +++ cat /etc/os-release
[2025-06-03 01:21:01] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 01:21:01] +++ NAME='CentOS Linux'
[2025-06-03 01:21:01] +++ VERSION='7 (Core)'
[2025-06-03 01:21:01] +++ ID=centos
[2025-06-03 01:21:01] +++ ID_LIKE='rhel fedora'
[2025-06-03 01:21:01] +++ VERSION_ID=7
[2025-06-03 01:21:01] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 01:21:01] +++ ANSI_COLOR='0;31'
[2025-06-03 01:21:01] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 01:21:01] +++ HOME_URL=https://www.centos.org/
[2025-06-03 01:21:01] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 01:21:01] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 01:21:01] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 01:21:01] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 01:21:01] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 01:21:01] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 01:21:01] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 01:21:01] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 01:21:01] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 01:21:01] + HOME=/scratch/boinc/var/slot36/slots/0
[2025-06-03 01:21:01] + export HOME
[2025-06-03 01:21:01] + cd /scratch/boinc/var/slot36/slots/0
[2025-06-03 01:21:01] + '[' '!' -z '' ']'
[2025-06-03 01:21:01] + '[' -z '' ']'
[2025-06-03 01:21:01] ++ /bin/hostname -f
[2025-06-03 01:21:01] + nodename=skurut03.grid.cesnet.cz
[2025-06-03 01:21:01] + echo nodename=skurut03.grid.cesnet.cz
[2025-06-03 01:21:01] + echo Processors=2
[2025-06-03 01:21:01] + echo Nodecount=1
[2025-06-03 01:21:01] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 01:21:01] + executable=./runpilot2-wrapper.sh
[2025-06-03 01:21:01] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 01:21:01] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 01:21:01] ++ head -n 1
[2025-06-03 01:21:01] ++ tr -d '\0'
[2025-06-03 01:21:01] + line1='#!/bin/bash'
[2025-06-03 01:21:01] ++ echo '#!/bin/bash'
[2025-06-03 01:21:01] ++ sed -n 's/^#! *//p'
[2025-06-03 01:21:01] + shebang=/bin/bash
[2025-06-03 01:21:01] ++ echo /bin/bash
[2025-06-03 01:21:01] ++ awk '{print $1}'
[2025-06-03 01:21:01] + interpreter=/bin/bash
[2025-06-03 01:21:01] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 01:21:01] + '[' x/bin/bash = x ']'
[2025-06-03 01:21:01] + type /bin/bash
[2025-06-03 01:21:01] + '[' xgnutime = xgnutime ']'
[2025-06-03 01:21:01] + /usr/bin/time -o /scratch/boinc/var/slot36/slots/0/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 01:21:01] + RESULT=2
[2025-06-03 01:21:01] + sed -i -e /nodename=/d /scratch/boinc/var/slot36/slots/0/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag
[2025-06-03 01:21:01] ++ grep domain_name init_data.xml
[2025-06-03 01:21:01] ++ awk -F '>' '{print $2}'
[2025-06-03 01:21:01] ++ awk -F '<' '{print $1}'
[2025-06-03 01:21:01] ++ sed -e 's# #_#g'
[2025-06-03 01:21:01] + hostname=skurut03.grid.cesnet.cz
[2025-06-03 01:21:01] ++ grep user_name init_data.xml
[2025-06-03 01:21:01] ++ awk -F '>' '{print $2}'
[2025-06-03 01:21:01] ++ awk -F '<' '{print $1}'
[2025-06-03 01:21:01] ++ sed -e 's# #_#g'
[2025-06-03 01:21:01] + username=praguelcg2
[2025-06-03 01:21:01] + nodename=praguelcg2@skurut03.grid.cesnet.cz
[2025-06-03 01:21:01] + echo nodename=praguelcg2@skurut03.grid.cesnet.cz
[2025-06-03 01:21:01] + '[' -n 4 ']'
[2025-06-03 01:21:01] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot36/slots/0/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag
[2025-06-03 01:21:01] + echo exitcode=2
[2025-06-03 01:21:01] + runtimeenvironments=
[2025-06-03 01:21:01] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 01:21:01] + RTE_function_0 2
[2025-06-03 01:21:01] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 01:21:01] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 01:21:01] + export BOINC_APP=ATLAS
[2025-06-03 01:21:01] + BOINC_APP=ATLAS
[2025-06-03 01:21:01] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 01:21:01] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 01:21:01] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 01:21:01] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 01:21:01] + '[' -z 2 ']'
[2025-06-03 01:21:01] + '[' 2 == 1 ']'
[2025-06-03 01:21:01] + '[' 0 -ne 0 ']'
[2025-06-03 01:21:01] + echo 'zip all output files'
[2025-06-03 01:21:01] + flist='*.diag '
[2025-06-03 01:21:01] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 01:21:01] + '[' -e ./heartbeat.json ']'
[2025-06-03 01:21:01] + flist='*.diag  ./heartbeat.json'
[2025-06-03 01:21:01] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 01:21:01] + '[' -e ./output.list ']'
[2025-06-03 01:21:01] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 01:21:01] + '[' -e ./log.44871837._084197.job.log.1 ']'
[2025-06-03 01:21:01] + flist='*.diag  ./heartbeat.json ./log.44871837._084197.job.log.1'
[2025-06-03 01:21:01] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 01:21:01] + '[' -e ./log.44871837._084197.job.log.1 ']'
[2025-06-03 01:21:01] + flist='*.diag  ./heartbeat.json ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1'
[2025-06-03 01:21:01] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 01:21:01] + '[' -e ./gmlog/ ']'
[2025-06-03 01:21:01] + '[' -f output.list ']'
[2025-06-03 01:21:01] + tar cvf result.tar.gz UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag ./heartbeat.json ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1
[2025-06-03 01:21:01] + '[' xgnutime = xcgroup ']'
[2025-06-03 01:21:01] + '[' -n '' ']'
[2025-06-03 01:21:01] + '[' -n '' ']'
[2025-06-03 01:21:01] ++ date +%s
[2025-06-03 01:21:01] + ACCOUNTING_ENDTIME=1748906298
[2025-06-03 01:21:01] ++ date -d '1970-01-01 UTC 1748906110 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 01:21:01] + echo LRMSStartTime=20250603011510Z
[2025-06-03 01:21:01] ++ date -d '1970-01-01 UTC 1748906298 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 01:21:01] + echo LRMSEndTime=20250603011818Z
[2025-06-03 01:21:01] + echo walltime=188
[2025-06-03 01:21:01] + echo exitcode=2
[2025-06-03 01:21:01] + exit 2
[2025-06-03 01:21:01] ./log.44871837._084197.job.log.tgz.1
[2025-06-03 01:21:01] ./log.44871837._084197.job.log.1
[2025-06-03 01:21:01] ./runtime_log
[2025-06-03 01:21:01] ./pilotlog.txt
[2025-06-03 01:21:01] ./PanDA_Pilot-6668440868/prmon.log
[2025-06-03 01:21:01] ./PanDA_Pilot-6668440868/pilotlog.txt
[2025-06-03 01:21:01] ./PanDA_Pilot-6668440868/PoolFileCatalog.xml
[2025-06-03 01:21:01] ./PanDA_Pilot-6668440868/log.EVNTtoHITS
[2025-06-03 01:21:01] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 01:21:01] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 01:21:01] ./pilot3/pilot/util/realtimelogger.py
[2025-06-03 01:21:01] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 01:21:01] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 01:21:01] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 01:21:01] ./runtime_log.err
09:01:09 (1024072): wrapper (7.7.26015): starting
09:01:09 (1024072): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 09:01:09] Arguments: --nthreads 4
[2025-06-03 09:01:09] Threads: 4
[2025-06-03 09:01:09] This job has been restarted, cleaning up previous attempt
[2025-06-03 09:01:09] Checking for CVMFS
[2025-06-03 09:01:09] No cvmfs_config command found, will try listing directly
[2025-06-03 09:01:09] CVMFS is ok
[2025-06-03 09:01:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 09:01:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 09:01:09] Further information can be found at the LHC@home message board.
[2025-06-03 09:01:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 09:01:09] Checking for apptainer binary...
[2025-06-03 09:01:09] which: no apptainer in ((null))
[2025-06-03 09:01:09] apptainer is not installed, using version from CVMFS
[2025-06-03 09:01:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 09:01:09] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-06-03 09:01:09] apptainer works
[2025-06-03 09:01:09] Set ATHENA_PROC_NUMBER=4
[2025-06-03 09:01:09] Set ATHENA_CORE_NUMBER=4
[2025-06-03 09:01:09] Starting ATLAS job with PandaID=6668440868
[2025-06-03 09:01:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 09:04:30] Job failed
[2025-06-03 09:04:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 09:04:30] ++ pwd
[2025-06-03 09:04:30] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-06-03 09:04:30] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot36/slots/0/
[2025-06-03 09:04:30] + mv ATLAS.root_0 EVNT.44871834._003285.pool.root.1
[2025-06-03 09:04:30] mv: 'ATLAS.root_0' and 'EVNT.44871834._003285.pool.root.1' are the same file
[2025-06-03 09:04:30] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 09:04:30] + umask 077
[2025-06-03 09:04:30] ++ date +%s
[2025-06-03 09:04:30] + ACCOUNTING_STARTTIME=1748934069
[2025-06-03 09:04:30] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 09:04:30] Detecting resource accounting method available for the job.
[2025-06-03 09:04:30] + JOB_ACCOUNTING=
[2025-06-03 09:04:30] + command -v arc-job-cgroup
[2025-06-03 09:04:30] + '[' -z '' ']'
[2025-06-03 09:04:30] + GNU_TIME=/usr/bin/time
[2025-06-03 09:04:30] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 09:04:30] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 09:04:30] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 09:04:30] + /usr/bin/time --version
[2025-06-03 09:04:30] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 09:04:30] GNU time found and will be used for job accounting.
[2025-06-03 09:04:30] + JOB_ACCOUNTING=gnutime
[2025-06-03 09:04:30] + '[' -z gnutime ']'
[2025-06-03 09:04:30] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 09:04:30] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 09:04:30] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668440868.out
[2025-06-03 09:04:30] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668440868.out
[2025-06-03 09:04:30] + export PILOT_NOKILL=YES
[2025-06-03 09:04:30] + PILOT_NOKILL=YES
[2025-06-03 09:04:30] + export GRID_GLOBAL_JOBID=UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm
[2025-06-03 09:04:30] + GRID_GLOBAL_JOBID=UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm
[2025-06-03 09:04:30] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm
[2025-06-03 09:04:30] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm
[2025-06-03 09:04:30] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 09:04:30] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 09:04:30] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 09:04:30] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 09:04:30] ++ pwd
[2025-06-03 09:04:30] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot36/slots/0
[2025-06-03 09:04:30] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 09:04:30] ++ pwd
[2025-06-03 09:04:30] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot36/slots/0/log.44871837._084197.job.log.1
[2025-06-03 09:04:30] ++ pwd
[2025-06-03 09:04:30] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot36/slots/0/log.44871837._084197.job.log.1
[2025-06-03 09:04:30] ++ pwd
[2025-06-03 09:04:30] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0.diag
[2025-06-03 09:04:30] + '[' '!' -z '' ']'
[2025-06-03 09:04:30] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 09:04:30] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 09:04:30] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 09:04:30] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 09:04:30] + '[' '!' -z '' ']'
[2025-06-03 09:04:30] + '[' -z yes ']'
[2025-06-03 09:04:30] ++ pwd
[2025-06-03 09:04:30] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot36/slots/0/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag
[2025-06-03 09:04:30] + runtimeenvironments=
[2025-06-03 09:04:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 09:04:30] + RTE_function_0 1
[2025-06-03 09:04:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 09:04:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 09:04:30] + export BOINC_APP=ATLAS
[2025-06-03 09:04:30] + BOINC_APP=ATLAS
[2025-06-03 09:04:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 09:04:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 09:04:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 09:04:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 09:04:30] + '[' -z 1 ']'
[2025-06-03 09:04:30] + '[' 1 == 1 ']'
[2025-06-03 09:04:30] + shift
[2025-06-03 09:04:30] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-06-03 09:04:30] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot36/slots/0/
[2025-06-03 09:04:30] + '[' 0 -ne 0 ']'
[2025-06-03 09:04:30] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 09:04:30] + '[' -f /etc/os-release ']'
[2025-06-03 09:04:30] +++ cat /etc/os-release
[2025-06-03 09:04:30] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 09:04:30] +++ NAME='CentOS Linux'
[2025-06-03 09:04:30] +++ VERSION='7 (Core)'
[2025-06-03 09:04:30] +++ ID=centos
[2025-06-03 09:04:30] +++ ID_LIKE='rhel fedora'
[2025-06-03 09:04:30] +++ VERSION_ID=7
[2025-06-03 09:04:30] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 09:04:30] +++ ANSI_COLOR='0;31'
[2025-06-03 09:04:30] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 09:04:30] +++ HOME_URL=https://www.centos.org/
[2025-06-03 09:04:30] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 09:04:30] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 09:04:30] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 09:04:30] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 09:04:30] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 09:04:30] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 09:04:30] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 09:04:30] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 09:04:30] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 09:04:30] + HOME=/scratch/boinc/var/slot36/slots/0
[2025-06-03 09:04:30] + export HOME
[2025-06-03 09:04:30] + cd /scratch/boinc/var/slot36/slots/0
[2025-06-03 09:04:30] + '[' '!' -z '' ']'
[2025-06-03 09:04:30] + '[' -z '' ']'
[2025-06-03 09:04:30] ++ /bin/hostname -f
[2025-06-03 09:04:30] + nodename=skurut03.grid.cesnet.cz
[2025-06-03 09:04:30] + echo nodename=skurut03.grid.cesnet.cz
[2025-06-03 09:04:30] + echo Processors=2
[2025-06-03 09:04:30] + echo Nodecount=1
[2025-06-03 09:04:30] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 09:04:30] + executable=./runpilot2-wrapper.sh
[2025-06-03 09:04:30] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 09:04:30] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 09:04:30] ++ head -n 1
[2025-06-03 09:04:30] ++ tr -d '\0'
[2025-06-03 09:04:30] + line1='#!/bin/bash'
[2025-06-03 09:04:30] ++ echo '#!/bin/bash'
[2025-06-03 09:04:30] ++ sed -n 's/^#! *//p'
[2025-06-03 09:04:30] + shebang=/bin/bash
[2025-06-03 09:04:30] ++ echo /bin/bash
[2025-06-03 09:04:30] ++ awk '{print $1}'
[2025-06-03 09:04:30] + interpreter=/bin/bash
[2025-06-03 09:04:30] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 09:04:30] + '[' x/bin/bash = x ']'
[2025-06-03 09:04:30] + type /bin/bash
[2025-06-03 09:04:30] + '[' xgnutime = xgnutime ']'
[2025-06-03 09:04:30] + /usr/bin/time -o /scratch/boinc/var/slot36/slots/0/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 09:04:30] + RESULT=2
[2025-06-03 09:04:30] + sed -i -e /nodename=/d /scratch/boinc/var/slot36/slots/0/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag
[2025-06-03 09:04:30] ++ grep domain_name init_data.xml
[2025-06-03 09:04:30] ++ awk -F '>' '{print $2}'
[2025-06-03 09:04:30] ++ awk -F '<' '{print $1}'
[2025-06-03 09:04:30] ++ sed -e 's# #_#g'
[2025-06-03 09:04:30] + hostname=skurut03.grid.cesnet.cz
[2025-06-03 09:04:30] ++ grep user_name init_data.xml
[2025-06-03 09:04:30] ++ awk -F '>' '{print $2}'
[2025-06-03 09:04:30] ++ awk -F '<' '{print $1}'
[2025-06-03 09:04:30] ++ sed -e 's# #_#g'
[2025-06-03 09:04:30] + username=praguelcg2
[2025-06-03 09:04:30] + nodename=praguelcg2@skurut03.grid.cesnet.cz
[2025-06-03 09:04:30] + echo nodename=praguelcg2@skurut03.grid.cesnet.cz
[2025-06-03 09:04:30] + '[' -n 4 ']'
[2025-06-03 09:04:30] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot36/slots/0/UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag
[2025-06-03 09:04:30] + echo exitcode=2
[2025-06-03 09:04:30] + runtimeenvironments=
[2025-06-03 09:04:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 09:04:30] + RTE_function_0 2
[2025-06-03 09:04:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 09:04:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 09:04:30] + export BOINC_APP=ATLAS
[2025-06-03 09:04:30] + BOINC_APP=ATLAS
[2025-06-03 09:04:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 09:04:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 09:04:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 09:04:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 09:04:30] + '[' -z 2 ']'
[2025-06-03 09:04:30] + '[' 2 == 1 ']'
[2025-06-03 09:04:30] + '[' 0 -ne 0 ']'
[2025-06-03 09:04:30] + echo 'zip all output files'
[2025-06-03 09:04:30] + flist='*.diag '
[2025-06-03 09:04:30] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 09:04:30] + '[' -e ./heartbeat.json ']'
[2025-06-03 09:04:30] + flist='*.diag  ./heartbeat.json'
[2025-06-03 09:04:30] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 09:04:30] + '[' -e ./output.list ']'
[2025-06-03 09:04:30] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 09:04:30] + '[' -e ./log.44871837._084197.job.log.1 ']'
[2025-06-03 09:04:30] + flist='*.diag  ./heartbeat.json ./log.44871837._084197.job.log.1'
[2025-06-03 09:04:30] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 09:04:30] + '[' -e ./log.44871837._084197.job.log.1 ']'
[2025-06-03 09:04:30] + flist='*.diag  ./heartbeat.json ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1'
[2025-06-03 09:04:30] + for f in ./heartbeat.json ./output.list ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1 ./gmlog/
[2025-06-03 09:04:30] + '[' -e ./gmlog/ ']'
[2025-06-03 09:04:30] + '[' -f output.list ']'
[2025-06-03 09:04:30] + tar cvf result.tar.gz UeRNDm04Ue7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm37bKDmF5sgDm.diag ./heartbeat.json ./log.44871837._084197.job.log.1 ./log.44871837._084197.job.log.1
[2025-06-03 09:04:30] + '[' xgnutime = xcgroup ']'
[2025-06-03 09:04:30] + '[' -n '' ']'
[2025-06-03 09:04:30] + '[' -n '' ']'
[2025-06-03 09:04:30] ++ date +%s
[2025-06-03 09:04:30] + ACCOUNTING_ENDTIME=1748934257
[2025-06-03 09:04:30] ++ date -d '1970-01-01 UTC 1748934069 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 09:04:30] + echo LRMSStartTime=20250603090109Z
[2025-06-03 09:04:30] ++ date -d '1970-01-01 UTC 1748934257 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 09:04:30] + echo LRMSEndTime=20250603090417Z
[2025-06-03 09:04:30] + echo walltime=188
[2025-06-03 09:04:30] + echo exitcode=2
[2025-06-03 09:04:30] + exit 2
[2025-06-03 09:04:30] ./log.44871837._084197.job.log.tgz.1
[2025-06-03 09:04:30] ./log.44871837._084197.job.log.1
[2025-06-03 09:04:30] ./runtime_log
[2025-06-03 09:04:30] ./pilotlog.txt
[2025-06-03 09:04:30] ./PanDA_Pilot-6668440868/prmon.log
[2025-06-03 09:04:30] ./PanDA_Pilot-6668440868/pilotlog.txt
[2025-06-03 09:04:30] ./PanDA_Pilot-6668440868/PoolFileCatalog.xml
[2025-06-03 09:04:30] ./PanDA_Pilot-6668440868/log.EVNTtoHITS
[2025-06-03 09:04:30] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 09:04:30] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 09:04:30] ./pilot3/pilot/util/realtimelogger.py
[2025-06-03 09:04:30] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 09:04:30] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 09:04:30] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 09:04:30] ./runtime_log.err
09:15:04 (1024072): run_atlas exited; CPU time 17.919547
09:15:04 (1024072): app exit status: 0x1
09:15:04 (1024072): called boinc_finish(195)

</stderr_txt>
]]>

©2025 CERN