Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:24:08 (11266): wrapper (7.7.26015): starting
05:24:08 (11266): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 05:24:08] Arguments: --nthreads 8
[2025-05-29 05:24:08] Threads: 8
[2025-05-29 05:24:08] Checking for CVMFS
[2025-05-29 05:24:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 05:24:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 05:24:09] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 05:24:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 05:24:10] 2.11.2.0 1855 24031 94652 146542 1 16 21746196 25165825 5303 130560 0 13520963 99.809 14480820 1815 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 05:24:10] CVMFS is ok
[2025-05-29 05:24:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 05:24:11] Checking for apptainer binary...
[2025-05-29 05:24:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 05:24:11] Running /usr/bin/apptainer --version
[2025-05-29 05:24:11] apptainer version 1.3.2-1.el7
[2025-05-29 05:24:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 05:29:55] cg-vwn348.simple-grid.lan
[2025-05-29 05:29:55] apptainer works
[2025-05-29 05:29:55] Set ATHENA_PROC_NUMBER=8
[2025-05-29 05:29:55] Set ATHENA_CORE_NUMBER=8
[2025-05-29 05:29:56] Starting ATLAS job with PandaID=6668439549
[2025-05-29 05:29:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 11:02:54]  *** The last 200 lines of the pilot log: ***
[2025-05-29 11:02:54] 2025-05-29 08:47:40,217 | INFO     | using path: /var/lib/boinc/slots/28/PanDA_Pilot-6668439549/memory_monitor_summary.json (trf name=prmon)
[2025-05-29 11:02:54] 2025-05-29 08:47:40,218 | INFO     | extracted standard info from prmon json
[2025-05-29 11:02:54] 2025-05-29 08:47:40,218 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 11:02:54] 2025-05-29 08:47:40,219 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 11:02:54] 2025-05-29 08:47:40,219 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 11:02:54] 2025-05-29 08:47:40,219 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 11:02:54] 2025-05-29 08:47:40,225 | INFO     | fitting pss+swap vs Time
[2025-05-29 11:02:54] 2025-05-29 08:47:40,226 | INFO     | sum of square deviations: 9237596457.5
[2025-05-29 11:02:54] 2025-05-29 08:47:40,229 | INFO     | sum of deviations: -29413486940.499992
[2025-05-29 11:02:54] 2025-05-29 08:47:40,229 | INFO     | mean x: 1748498892.5
[2025-05-29 11:02:54] 2025-05-29 08:47:40,230 | INFO     | mean y: 2514665.764516129
[2025-05-29 11:02:54] 2025-05-29 08:47:40,230 | INFO     | -- intersect: 5569920600.483812
[2025-05-29 11:02:54] 2025-05-29 08:47:40,230 | INFO     | intersect: 5569920600.483812
[2025-05-29 11:02:54] 2025-05-29 08:47:40,230 | INFO     | chi2: 2.526749859403139
[2025-05-29 11:02:54] 2025-05-29 08:47:40,231 | INFO     | sum of square deviations: 8797783560.0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,234 | INFO     | sum of deviations: -8328219589.999993
[2025-05-29 11:02:54] 2025-05-29 08:47:40,234 | INFO     | mean x: 1748498740.0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,234 | INFO     | mean y: 2521883.449180328
[2025-05-29 11:02:54] 2025-05-29 08:47:40,234 | INFO     | -- intersect: 1657698026.422889
[2025-05-29 11:02:54] 2025-05-29 08:47:40,235 | INFO     | intersect: 1657698026.422889
[2025-05-29 11:02:54] 2025-05-29 08:47:40,235 | INFO     | chi2: 1.7597076317259797
[2025-05-29 11:02:54] 2025-05-29 08:47:40,235 | INFO     | current chi2=1.7597076317259797 (change=30.356872280912985 %)
[2025-05-29 11:02:54] 2025-05-29 08:47:40,236 | INFO     | sum of square deviations: 8372156975.0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,239 | INFO     | sum of deviations: -8112049620.000006
[2025-05-29 11:02:54] 2025-05-29 08:47:40,239 | INFO     | mean x: 1748498587.5
[2025-05-29 11:02:54] 2025-05-29 08:47:40,239 | INFO     | mean y: 2521960.8666666667
[2025-05-29 11:02:54] 2025-05-29 08:47:40,239 | INFO     | -- intersect: 1696697947.3722136
[2025-05-29 11:02:54] 2025-05-29 08:47:40,239 | INFO     | intersect: 1696697947.3722136
[2025-05-29 11:02:54] 2025-05-29 08:47:40,240 | INFO     | chi2: 1.7595050112880797
[2025-05-29 11:02:54] 2025-05-29 08:47:40,240 | INFO     | current chi2=1.7595050112880797 (change=0.011514437639918848 %)
[2025-05-29 11:02:54] 2025-05-29 08:47:40,240 | INFO     | right removable region: 299
[2025-05-29 11:02:54] 2025-05-29 08:47:40,240 | INFO     | sum of square deviations: 8797783560.0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,243 | INFO     | sum of deviations: -78649820398.00002
[2025-05-29 11:02:54] 2025-05-29 08:47:40,244 | INFO     | mean x: 1748499045.0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,244 | INFO     | mean y: 2531617.4229508196
[2025-05-29 11:02:54] 2025-05-29 08:47:40,244 | INFO     | -- intersect: 15633643126.072584
[2025-05-29 11:02:54] 2025-05-29 08:47:40,244 | INFO     | intersect: 15633643126.072584
[2025-05-29 11:02:54] 2025-05-29 08:47:40,244 | INFO     | chi2: 1.0229713596210066
[2025-05-29 11:02:54] 2025-05-29 08:47:40,244 | INFO     | current chi2=1.0229713596210066 (change=59.51433990135258 %)
[2025-05-29 11:02:54] 2025-05-29 08:47:40,245 | INFO     | sum of square deviations: 8372156975.0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,249 | INFO     | sum of deviations: -81235760000.5
[2025-05-29 11:02:54] 2025-05-29 08:47:40,249 | INFO     | mean x: 1748499197.5
[2025-05-29 11:02:54] 2025-05-29 08:47:40,250 | INFO     | mean y: 2532532.0833333335
[2025-05-29 11:02:54] 2025-05-29 08:47:40,250 | INFO     | -- intersect: 16968370797.33837
[2025-05-29 11:02:54] 2025-05-29 08:47:40,250 | INFO     | intersect: 16968370797.33837
[2025-05-29 11:02:54] 2025-05-29 08:47:40,250 | INFO     | chi2: 1.0021230888403867
[2025-05-29 11:02:54] 2025-05-29 08:47:40,250 | INFO     | current chi2=1.0021230888403867 (change=2.03801119010251 %)
[2025-05-29 11:02:54] 2025-05-29 08:47:40,251 | INFO     | left removable region: 20
[2025-05-29 11:02:54] 2025-05-29 08:47:40,251 | INFO     | sum of square deviations: 6734191380.0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,253 | INFO     | sum of deviations: -41822205181.0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,254 | INFO     | mean x: 1748499167.0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,254 | INFO     | mean y: 2533865.1827956988
[2025-05-29 11:02:54] 2025-05-29 08:47:40,254 | INFO     | -- intersect: 10861460615.95203
[2025-05-29 11:02:54] 2025-05-29 08:47:40,254 | INFO     | intersect: 10861460615.95203
[2025-05-29 11:02:54] 2025-05-29 08:47:40,255 | INFO     | chi2: 0.19040191978187787
[2025-05-29 11:02:54] 2025-05-29 08:47:40,255 | INFO     | -- intersect: 10861460615.95203
[2025-05-29 11:02:54] 2025-05-29 08:47:40,255 | INFO     | current memory leak: -6.21 B/s (using 279 data points, chi2=0.19)
[2025-05-29 11:02:54] 2025-05-29 08:47:40,256 | INFO     | ..............................
[2025-05-29 11:02:54] 2025-05-29 08:47:40,256 | INFO     | . Timing measurements:
[2025-05-29 11:02:54] 2025-05-29 08:47:40,256 | INFO     | . get job = 0 s
[2025-05-29 11:02:54] 2025-05-29 08:47:40,256 | INFO     | . initial setup = 2 s
[2025-05-29 11:02:54] 2025-05-29 08:47:40,256 | INFO     | . payload setup = 14 s
[2025-05-29 11:02:54] 2025-05-29 08:47:40,256 | INFO     | . stage-in = 0 s
[2025-05-29 11:02:54] 2025-05-29 08:47:40,256 | INFO     | . payload execution = 18907 s
[2025-05-29 11:02:54] 2025-05-29 08:47:40,257 | INFO     | . stage-out = 6 s
[2025-05-29 11:02:54] 2025-05-29 08:47:40,257 | INFO     | . log creation = 1 s
[2025-05-29 11:02:54] 2025-05-29 08:47:40,257 | INFO     | ..............................
[2025-05-29 11:02:54] 2025-05-29 08:47:40,392 | INFO     | 
[2025-05-29 11:02:54] 2025-05-29 08:47:40,392 | INFO     | job summary report
[2025-05-29 11:02:54] 2025-05-29 08:47:40,392 | INFO     | --------------------------------------------------
[2025-05-29 11:02:54] 2025-05-29 08:47:40,392 | INFO     | PanDA job id: 6668439549
[2025-05-29 11:02:54] 2025-05-29 08:47:40,392 | INFO     | task id: 44871837
[2025-05-29 11:02:54] 2025-05-29 08:47:40,392 | INFO     | errors: (none)
[2025-05-29 11:02:54] 2025-05-29 08:47:40,392 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 11:02:54] 2025-05-29 08:47:40,392 | INFO     | pilot state: finished 
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | transexitcode: 0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | exeerrorcode: 0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | exeerrordiag: 
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | exitcode: 0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | exitmsg: OK
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | cpuconsumptiontime: 73056 s
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | nevents: 400
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | neventsw: 0
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | pid: 28761
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | pgrp: 28761
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | corecount: 8
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | event service: False
[2025-05-29 11:02:54] 2025-05-29 08:47:40,393 | INFO     | sizes: {0: 2405008, 1: 2405263, 2: 2405263, 7: 2405497, 12: 2405525, 18926: 2437557, 18932: 2446556, 19023: 2446670}
[2025-05-29 11:02:54] 2025-05-29 08:47:40,394 | INFO     | --------------------------------------------------
[2025-05-29 11:02:54] 2025-05-29 08:47:40,394 | INFO     | 
[2025-05-29 11:02:54] 2025-05-29 08:47:40,394 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2025-05-29 11:02:54] 2025-05-29 08:47:40,929 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,930 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,930 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,930 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,930 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,930 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,930 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,930 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,931 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 11:02:54] 2025-05-29 08:47:40,932 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,932 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 11:02:54] 2025-05-29 08:47:40,932 | INFO     | job 6668439549 has completed (purged errors)
[2025-05-29 11:02:54] 2025-05-29 08:47:40,932 | INFO     | overall cleanup function is called
[2025-05-29 11:02:54] 2025-05-29 08:47:41,942 | INFO     | --- collectZombieJob: --- 10, [28761]
[2025-05-29 11:02:54] 2025-05-29 08:47:41,942 | INFO     | zombie collector waiting for pid 28761
[2025-05-29 11:02:54] 2025-05-29 08:47:41,942 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 11:02:54] 2025-05-29 08:47:41,942 | INFO     | collected zombie processes
[2025-05-29 11:02:54] 2025-05-29 08:47:41,942 | INFO     | will attempt to kill all subprocesses of pid=28761
[2025-05-29 11:02:54] 2025-05-29 08:47:42,053 | INFO     | process IDs to be killed: [28761] (in reverse order)
[2025-05-29 11:02:54] 2025-05-29 08:47:42,742 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 11:02:54] 2025-05-29 08:47:42,743 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 11:02:54] 2025-05-29 08:47:42,746 | INFO     | did not find any defunct processes belonging to 28761
[2025-05-29 11:02:54] 2025-05-29 08:47:42,751 | INFO     | did not find any defunct processes belonging to 28761
[2025-05-29 11:02:54] 2025-05-29 08:47:42,752 | INFO     | ready for new job
[2025-05-29 11:02:54] 2025-05-29 08:47:42,752 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 11:02:54] 2025-05-29 08:47:42,754 | INFO     | **************************************
[2025-05-29 11:02:54] 2025-05-29 08:47:42,754 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 11:02:54] 2025-05-29 08:47:42,754 | INFO     | **************************************
[2025-05-29 11:02:54] 2025-05-29 08:47:42,754 | INFO     | 
[2025-05-29 11:02:54] 2025-05-29 08:47:42,755 | INFO     | pilot is running in a VM
[2025-05-29 11:02:54] 2025-05-29 08:47:42,755 | INFO     | architecture information:
[2025-05-29 11:02:54] 2025-05-29 08:47:42,758 | INFO     | executing command: cat /etc/os-release
[2025-05-29 11:02:54] 2025-05-29 08:47:43,027 | INFO     | cat /etc/os-release:
[2025-05-29 11:02:54] NAME="CentOS Linux"
[2025-05-29 11:02:54] VERSION="7 (Core)"
[2025-05-29 11:02:54] ID="centos"
[2025-05-29 11:02:54] ID_LIKE="rhel fedora"
[2025-05-29 11:02:54] VERSION_ID="7"
[2025-05-29 11:02:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 11:02:54] ANSI_COLOR="0;31"
[2025-05-29 11:02:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 11:02:54] HOME_URL="https://www.centos.org/"
[2025-05-29 11:02:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 11:02:54] 
[2025-05-29 11:02:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 11:02:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 11:02:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 11:02:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 11:02:54] 
[2025-05-29 11:02:54] 2025-05-29 08:47:43,028 | INFO     | **************************************
[2025-05-29 11:02:54] 2025-05-29 08:47:43,536 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2025-05-29 11:02:54] 2025-05-29 08:47:43,833 | INFO     | sufficient remaining disk space (496115908608 B)
[2025-05-29 11:02:54] 2025-05-29 08:47:43,833 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 11:02:54] 2025-05-29 08:47:43,833 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 11:02:54] 2025-05-29 08:47:43,833 | INFO     | update_server=False
[2025-05-29 11:02:54] 2025-05-29 08:47:43,834 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 11:02:54] 2025-05-29 08:47:43,834 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 11:02:54] 2025-05-29 08:47:43,834 | INFO     | aborting loop
[2025-05-29 11:02:54] 2025-05-29 08:47:43,839 | INFO     | all job control threads have been joined
[2025-05-29 11:02:54] 2025-05-29 08:47:44,554 | INFO     | all payload control threads have been joined
[2025-05-29 11:02:54] 2025-05-29 08:47:44,558 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 11:02:54] 2025-05-29 08:47:44,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 11:02:54] 2025-05-29 08:47:44,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 11:02:54] 2025-05-29 08:47:44,610 | INFO     | all data control threads have been joined
[2025-05-29 11:02:54] 2025-05-29 08:47:44,840 | INFO     | [job] retrieve thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:44,840 | INFO     | [job] job monitor thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:44,846 | INFO     | [job] control thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:44,949 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:45,276 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 11:02:54] 2025-05-29 08:47:45,366 | INFO     | [data] copytool_in thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:45,406 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 11:02:54] 2025-05-29 08:47:45,500 | INFO     | [payload] validate_post thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:45,560 | INFO     | [payload] control thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:45,581 | INFO     | [job] validate thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:45,616 | INFO     | [data] control thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:45,814 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 11:02:54] 2025-05-29 08:47:45,983 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:46,010 | INFO     | [payload] failed_post thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:46,258 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:46,333 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:46,412 | INFO     | [job] queue monitor thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:47,283 | INFO     | [data] copytool_out thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:49,823 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 11:02:54] 2025-05-29 08:47:51,339 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245750142784)>', '<ExcThread(monitor, started 140245169334016)>']
[2025-05-29 11:02:54] 2025-05-29 08:47:51,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 11:02:54] 2025-05-29 08:47:51,597 | INFO     | [monitor] control thread has ended
[2025-05-29 11:02:54] 2025-05-29 08:47:56,365 | INFO     | all workflow threads have been joined
[2025-05-29 11:02:54] 2025-05-29 08:47:56,365 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 11:02:54] 2025-05-29 08:47:56,365 | INFO     | traces error code: 0
[2025-05-29 11:02:54] 2025-05-29 08:47:56,365 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 11:02:54] 2025-05-29 08:47:56,691 [wrapper] ==== pilot stdout END ====
[2025-05-29 11:02:54] 2025-05-29 08:47:56,764 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 11:02:54] 2025-05-29 08:47:56,837 [wrapper] pilotpid: 22255
[2025-05-29 11:02:54] 2025-05-29 08:47:56,898 [wrapper] Pilot exit status: 0
[2025-05-29 11:02:54] 2025-05-29 08:47:57,238 [wrapper] pandaids: 6668439549
[2025-05-29 11:02:54] 2025-05-29 08:47:57,688 [wrapper] cleanup supervisor_pilot  8566 22256
[2025-05-29 11:02:54] 2025-05-29 08:47:57,782 [wrapper] Test setup, not cleaning
[2025-05-29 11:02:54] 2025-05-29 08:47:57,854 [wrapper] apfmon messages muted
[2025-05-29 11:02:54] 2025-05-29 08:47:57,959 [wrapper] ==== wrapper stdout END ====
[2025-05-29 11:02:54] 2025-05-29 08:47:58,089 [wrapper] ==== wrapper stderr END ====
[2025-05-29 11:02:54]  *** Error codes and diagnostics ***
[2025-05-29 11:02:54]     "exeErrorCode": 0,
[2025-05-29 11:02:54]     "exeErrorDiag": "",
[2025-05-29 11:02:54]     "pilotErrorCode": 0,
[2025-05-29 11:02:54]     "pilotErrorDiag": "",
[2025-05-29 11:02:54]  *** Listing of results directory ***
[2025-05-29 11:02:54] total 429188
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc    495897 May 28 13:30 pilot3.tar.gz
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc      5111 May 28 13:39 queuedata.json
[2025-05-29 11:02:54] -rwx------. 1 boinc boinc     37140 May 28 13:40 runpilot2-wrapper.sh
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc       100 May 29 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 11:02:54] -rwxr-xr-x. 1 boinc boinc      7986 May 29 05:24 run_atlas
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc       105 May 29 05:24 job.xml
[2025-05-29 11:02:54] -rw-r--r--. 2 boinc boinc 225628241 May 29 05:24 EVNT.44871834._003271.pool.root.1
[2025-05-29 11:02:54] -rw-r--r--. 2 boinc boinc     15093 May 29 05:24 start_atlas.sh
[2025-05-29 11:02:54] drwxrwx--x. 2 boinc boinc        68 May 29 05:24 shared
[2025-05-29 11:02:54] -rw-r--r--. 2 boinc boinc    508883 May 29 05:24 input.tar.gz
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc      6372 May 29 05:24 init_data.xml
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc         0 May 29 05:24 boinc_lockfile
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc      2559 May 29 05:29 pandaJob.out
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc    993415 May 29 05:30 agis_schedconf.cvmfs.json
[2025-05-29 11:02:54] drwx------. 4 boinc boinc      4096 May 29 05:30 pilot3
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc 205885401 May 29 10:44 HITS.44871837._083865.pool.root.1
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc       531 May 29 10:45 boinc_task_state.xml
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc      1014 May 29 10:45 memory_monitor_summary.json
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc   1603667 May 29 10:46 agis_ddmendpoints.agis.ALL.json
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc    444374 May 29 10:46 log.44871837._083865.job.log.tgz.1
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc        95 May 29 10:47 pilot_heartbeat.json
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc      7688 May 29 10:47 heartbeat.json
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc      4417 May 29 10:47 pilotlog.txt
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc   1626815 May 29 10:47 log.44871837._083865.job.log.1
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc       357 May 29 10:47 output.list
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc       620 May 29 10:47 runtime_log
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc   2088960 May 29 10:47 result.tar.gz
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc      8673 May 29 10:47 runtime_log.err
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc       656 May 29 10:47 oM0MDmHKUe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmC3bKDm6YXfVo.diag
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc      8192 May 29 11:02 boinc_mmap_file
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc        28 May 29 11:02 wrapper_checkpoint.txt
[2025-05-29 11:02:54] -rw-r--r--. 1 boinc boinc     20485 May 29 11:02 stderr.txt
[2025-05-29 11:02:54] HITS file was successfully produced:
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc 205885401 May 29 10:44 shared/HITS.pool.root.1
[2025-05-29 11:02:54]  *** Contents of shared directory: ***
[2025-05-29 11:02:54] total 423960
[2025-05-29 11:02:54] -rw-r--r--. 2 boinc boinc 225628241 May 29 05:24 ATLAS.root_0
[2025-05-29 11:02:54] -rw-r--r--. 2 boinc boinc     15093 May 29 05:24 start_atlas.sh
[2025-05-29 11:02:54] -rw-r--r--. 2 boinc boinc    508883 May 29 05:24 input.tar.gz
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc 205885401 May 29 10:44 HITS.pool.root.1
[2025-05-29 11:02:54] -rw-------. 1 boinc boinc   2088960 May 29 10:47 result.tar.gz
11:02:56 (11266): run_atlas exited; CPU time 73299.068328
11:02:56 (11266): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN