Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
02:41:31 (2931346): wrapper (7.7.26015): starting
02:41:31 (2931346): wrapper: running run_atlas (--nthreads 4)
[2025-06-01 02:41:31] Arguments: --nthreads 4
[2025-06-01 02:41:31] Threads: 4
[2025-06-01 02:41:31] Checking for CVMFS
[2025-06-01 02:41:31] No cvmfs_config command found, will try listing directly
[2025-06-01 02:41:31] CVMFS is ok
[2025-06-01 02:41:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-01 02:41:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-01 02:41:31] Further information can be found at the LHC@home message board.
[2025-06-01 02:41:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-01 02:41:31] Checking for apptainer binary...
[2025-06-01 02:41:31] which: no apptainer in ((null))
[2025-06-01 02:41:31] apptainer is not installed, using version from CVMFS
[2025-06-01 02:41:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-01 02:41:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-01 02:41:31] apptainer works
[2025-06-01 02:41:31] Set ATHENA_PROC_NUMBER=4
[2025-06-01 02:41:31] Set ATHENA_CORE_NUMBER=4
[2025-06-01 02:41:31] Starting ATLAS job with PandaID=6668326264
[2025-06-01 02:41:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:37:29 (3612378): wrapper (7.7.26015): starting
15:37:29 (3612378): wrapper: running run_atlas (--nthreads 4)
[2025-06-01 15:37:29] Arguments: --nthreads 4
[2025-06-01 15:37:29] Threads: 4
[2025-06-01 15:37:29] This job has been restarted, cleaning up previous attempt
[2025-06-01 15:37:29] Checking for CVMFS
[2025-06-01 15:37:29] No cvmfs_config command found, will try listing directly
[2025-06-01 15:37:30] CVMFS is ok
[2025-06-01 15:37:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-01 15:37:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-01 15:37:30] Further information can be found at the LHC@home message board.
[2025-06-01 15:37:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-01 15:37:30] Checking for apptainer binary...
[2025-06-01 15:37:30] which: no apptainer in ((null))
[2025-06-01 15:37:30] apptainer is not installed, using version from CVMFS
[2025-06-01 15:37:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-01 15:37:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-01 15:37:30] apptainer works
[2025-06-01 15:37:30] Set ATHENA_PROC_NUMBER=4
[2025-06-01 15:37:30] Set ATHENA_CORE_NUMBER=4
[2025-06-01 15:37:30] Starting ATLAS job with PandaID=6668326264
[2025-06-01 15:37:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-01 15:41:30] Job failed
[2025-06-01 15:41:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-01 15:41:30] ++ pwd
[2025-06-01 15:41:30] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot32/slots/0/
[2025-06-01 15:41:30] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot32/slots/0/
[2025-06-01 15:41:30] + mv ATLAS.root_0 EVNT.44871834._003226.pool.root.1
[2025-06-01 15:41:30] mv: 'ATLAS.root_0' and 'EVNT.44871834._003226.pool.root.1' are the same file
[2025-06-01 15:41:30] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-01 15:41:30] + umask 077
[2025-06-01 15:41:30] ++ date +%s
[2025-06-01 15:41:30] + ACCOUNTING_STARTTIME=1748785050
[2025-06-01 15:41:30] + echo 'Detecting resource accounting method available for the job.'
[2025-06-01 15:41:30] Detecting resource accounting method available for the job.
[2025-06-01 15:41:30] + JOB_ACCOUNTING=
[2025-06-01 15:41:30] + command -v arc-job-cgroup
[2025-06-01 15:41:30] + '[' -z '' ']'
[2025-06-01 15:41:30] + GNU_TIME=/usr/bin/time
[2025-06-01 15:41:30] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-01 15:41:30] Looking for /usr/bin/time tool for accounting measurements
[2025-06-01 15:41:30] + '[' '!' -z /usr/bin/time ']'
[2025-06-01 15:41:30] + /usr/bin/time --version
[2025-06-01 15:41:30] + echo 'GNU time found and will be used for job accounting.'
[2025-06-01 15:41:30] GNU time found and will be used for job accounting.
[2025-06-01 15:41:30] + JOB_ACCOUNTING=gnutime
[2025-06-01 15:41:30] + '[' -z gnutime ']'
[2025-06-01 15:41:30] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-01 15:41:30] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-01 15:41:30] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668326264.out
[2025-06-01 15:41:30] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668326264.out
[2025-06-01 15:41:30] + export PILOT_NOKILL=YES
[2025-06-01 15:41:30] + PILOT_NOKILL=YES
[2025-06-01 15:41:30] + export GRID_GLOBAL_JOBID=EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-01 15:41:30] + GRID_GLOBAL_JOBID=EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-01 15:41:30] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-01 15:41:30] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-01 15:41:30] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-01 15:41:30] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-01 15:41:30] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-01 15:41:30] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-01 15:41:30] ++ pwd
[2025-06-01 15:41:30] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot32/slots/0
[2025-06-01 15:41:30] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-01 15:41:30] ++ pwd
[2025-06-01 15:41:30] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot32/slots/0/log.44871837._082668.job.log.1
[2025-06-01 15:41:30] ++ pwd
[2025-06-01 15:41:30] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot32/slots/0/log.44871837._082668.job.log.1
[2025-06-01 15:41:30] ++ pwd
[2025-06-01 15:41:30] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot32/slots/0.diag
[2025-06-01 15:41:30] + '[' '!' -z '' ']'
[2025-06-01 15:41:30] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-01 15:41:30] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-01 15:41:30] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-01 15:41:30] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-01 15:41:30] + '[' '!' -z '' ']'
[2025-06-01 15:41:30] + '[' -z yes ']'
[2025-06-01 15:41:30] ++ pwd
[2025-06-01 15:41:30] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag
[2025-06-01 15:41:30] + runtimeenvironments=
[2025-06-01 15:41:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-01 15:41:30] + RTE_function_0 1
[2025-06-01 15:41:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-01 15:41:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-01 15:41:30] + export BOINC_APP=ATLAS
[2025-06-01 15:41:30] + BOINC_APP=ATLAS
[2025-06-01 15:41:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-01 15:41:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-01 15:41:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-01 15:41:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-01 15:41:30] + '[' -z 1 ']'
[2025-06-01 15:41:30] + '[' 1 == 1 ']'
[2025-06-01 15:41:30] + shift
[2025-06-01 15:41:30] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot32/slots/0/
[2025-06-01 15:41:30] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot32/slots/0/
[2025-06-01 15:41:30] + '[' 0 -ne 0 ']'
[2025-06-01 15:41:30] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-01 15:41:30] + '[' -f /etc/os-release ']'
[2025-06-01 15:41:30] +++ cat /etc/os-release
[2025-06-01 15:41:30] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-01 15:41:30] +++ NAME='CentOS Linux'
[2025-06-01 15:41:30] +++ VERSION='7 (Core)'
[2025-06-01 15:41:30] +++ ID=centos
[2025-06-01 15:41:30] +++ ID_LIKE='rhel fedora'
[2025-06-01 15:41:30] +++ VERSION_ID=7
[2025-06-01 15:41:30] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-01 15:41:30] +++ ANSI_COLOR='0;31'
[2025-06-01 15:41:30] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-01 15:41:30] +++ HOME_URL=https://www.centos.org/
[2025-06-01 15:41:30] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-01 15:41:30] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-01 15:41:30] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-01 15:41:30] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-01 15:41:30] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-01 15:41:30] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-01 15:41:30] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-01 15:41:30] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-01 15:41:30] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-01 15:41:30] + HOME=/scratch/boinc/var/slot32/slots/0
[2025-06-01 15:41:30] + export HOME
[2025-06-01 15:41:30] + cd /scratch/boinc/var/slot32/slots/0
[2025-06-01 15:41:30] + '[' '!' -z '' ']'
[2025-06-01 15:41:30] + '[' -z '' ']'
[2025-06-01 15:41:30] ++ /bin/hostname -f
[2025-06-01 15:41:30] + nodename=skurut05.grid.cesnet.cz
[2025-06-01 15:41:30] + echo nodename=skurut05.grid.cesnet.cz
[2025-06-01 15:41:30] + echo Processors=2
[2025-06-01 15:41:30] + echo Nodecount=1
[2025-06-01 15:41:30] + echo Benchmark=HEPSPEC:1.0
[2025-06-01 15:41:30] + executable=./runpilot2-wrapper.sh
[2025-06-01 15:41:30] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-01 15:41:30] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-01 15:41:30] ++ head -n 1
[2025-06-01 15:41:30] ++ tr -d '\0'
[2025-06-01 15:41:30] + line1='#!/bin/bash'
[2025-06-01 15:41:30] ++ echo '#!/bin/bash'
[2025-06-01 15:41:30] ++ sed -n 's/^#! *//p'
[2025-06-01 15:41:30] + shebang=/bin/bash
[2025-06-01 15:41:30] ++ echo /bin/bash
[2025-06-01 15:41:30] ++ awk '{print $1}'
[2025-06-01 15:41:30] + interpreter=/bin/bash
[2025-06-01 15:41:30] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-01 15:41:30] + '[' x/bin/bash = x ']'
[2025-06-01 15:41:30] + type /bin/bash
[2025-06-01 15:41:30] + '[' xgnutime = xgnutime ']'
[2025-06-01 15:41:30] + /usr/bin/time -o /scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-01 15:41:30] + RESULT=2
[2025-06-01 15:41:30] + sed -i -e /nodename=/d /scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag
[2025-06-01 15:41:30] ++ grep domain_name init_data.xml
[2025-06-01 15:41:30] ++ awk -F '>' '{print $2}'
[2025-06-01 15:41:30] ++ awk -F '<' '{print $1}'
[2025-06-01 15:41:30] ++ sed -e 's# #_#g'
[2025-06-01 15:41:30] + hostname=skurut05.grid.cesnet.cz
[2025-06-01 15:41:30] ++ grep user_name init_data.xml
[2025-06-01 15:41:30] ++ awk -F '>' '{print $2}'
[2025-06-01 15:41:30] ++ awk -F '<' '{print $1}'
[2025-06-01 15:41:30] ++ sed -e 's# #_#g'
[2025-06-01 15:41:30] + username=praguelcg2
[2025-06-01 15:41:30] + nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-01 15:41:30] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-01 15:41:30] + '[' -n 4 ']'
[2025-06-01 15:41:30] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag
[2025-06-01 15:41:30] + echo exitcode=2
[2025-06-01 15:41:30] + runtimeenvironments=
[2025-06-01 15:41:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-01 15:41:30] + RTE_function_0 2
[2025-06-01 15:41:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-01 15:41:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-01 15:41:30] + export BOINC_APP=ATLAS
[2025-06-01 15:41:30] + BOINC_APP=ATLAS
[2025-06-01 15:41:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-01 15:41:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-01 15:41:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-01 15:41:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-01 15:41:30] + '[' -z 2 ']'
[2025-06-01 15:41:30] + '[' 2 == 1 ']'
[2025-06-01 15:41:30] + '[' 0 -ne 0 ']'
[2025-06-01 15:41:30] + echo 'zip all output files'
[2025-06-01 15:41:30] + flist='*.diag '
[2025-06-01 15:41:30] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-01 15:41:30] + '[' -e ./heartbeat.json ']'
[2025-06-01 15:41:30] + flist='*.diag  ./heartbeat.json'
[2025-06-01 15:41:30] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-01 15:41:30] + '[' -e ./output.list ']'
[2025-06-01 15:41:30] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-01 15:41:30] + '[' -e ./log.44871837._082668.job.log.1 ']'
[2025-06-01 15:41:30] + flist='*.diag  ./heartbeat.json ./log.44871837._082668.job.log.1'
[2025-06-01 15:41:30] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-01 15:41:30] + '[' -e ./log.44871837._082668.job.log.1 ']'
[2025-06-01 15:41:30] + flist='*.diag  ./heartbeat.json ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1'
[2025-06-01 15:41:30] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-01 15:41:30] + '[' -e ./gmlog/ ']'
[2025-06-01 15:41:30] + '[' -f output.list ']'
[2025-06-01 15:41:30] + tar cvf result.tar.gz EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag ./heartbeat.json ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1
[2025-06-01 15:41:30] + '[' xgnutime = xcgroup ']'
[2025-06-01 15:41:30] + '[' -n '' ']'
[2025-06-01 15:41:30] + '[' -n '' ']'
[2025-06-01 15:41:30] ++ date +%s
[2025-06-01 15:41:30] + ACCOUNTING_ENDTIME=1748785241
[2025-06-01 15:41:30] ++ date -d '1970-01-01 UTC 1748785050 seconds' +%Y%m%d%H%M%SZ
[2025-06-01 15:41:30] + echo LRMSStartTime=20250601153730Z
[2025-06-01 15:41:30] ++ date -d '1970-01-01 UTC 1748785241 seconds' +%Y%m%d%H%M%SZ
[2025-06-01 15:41:30] + echo LRMSEndTime=20250601154041Z
[2025-06-01 15:41:30] + echo walltime=191
[2025-06-01 15:41:30] + echo exitcode=2
[2025-06-01 15:41:30] + exit 2
[2025-06-01 15:41:30] ./pilotlog.txt
[2025-06-01 15:41:30] ./log.44871837._082668.job.log.1
[2025-06-01 15:41:30] ./log.44871837._082668.job.log.tgz.1
[2025-06-01 15:41:30] ./runtime_log.err
[2025-06-01 15:41:30] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-01 15:41:30] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-01 15:41:30] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-01 15:41:30] ./pilot3/pilot/util/realtimelogger.py
[2025-06-01 15:41:30] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-01 15:41:30] ./pilot3/pilot/util/loggingsupport.py
[2025-06-01 15:41:30] ./PanDA_Pilot-6668326264/pilotlog.txt
[2025-06-01 15:41:30] ./PanDA_Pilot-6668326264/prmon.log
[2025-06-01 15:41:30] ./PanDA_Pilot-6668326264/log.EVNTtoHITS
[2025-06-01 15:41:30] ./PanDA_Pilot-6668326264/PoolFileCatalog.xml
[2025-06-01 15:41:30] ./runtime_log
16:20:35 (3656307): wrapper (7.7.26015): starting
16:20:35 (3656307): wrapper: running run_atlas (--nthreads 4)
[2025-06-01 16:20:35] Arguments: --nthreads 4
[2025-06-01 16:20:35] Threads: 4
[2025-06-01 16:20:35] This job has been restarted, cleaning up previous attempt
[2025-06-01 16:20:35] Checking for CVMFS
[2025-06-01 16:20:35] No cvmfs_config command found, will try listing directly
[2025-06-01 16:20:36] CVMFS is ok
[2025-06-01 16:20:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-01 16:20:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-01 16:20:36] Further information can be found at the LHC@home message board.
[2025-06-01 16:20:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-01 16:20:36] Checking for apptainer binary...
[2025-06-01 16:20:36] which: no apptainer in ((null))
[2025-06-01 16:20:36] apptainer is not installed, using version from CVMFS
[2025-06-01 16:20:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-01 16:20:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-01 16:20:36] apptainer works
[2025-06-01 16:20:36] Set ATHENA_PROC_NUMBER=4
[2025-06-01 16:20:36] Set ATHENA_CORE_NUMBER=4
[2025-06-01 16:20:36] Starting ATLAS job with PandaID=6668326264
[2025-06-01 16:20:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:19:27 (977352): wrapper (7.7.26015): starting
18:19:27 (977352): wrapper: running run_atlas (--nthreads 4)
[2025-06-02 18:19:27] Arguments: --nthreads 4
[2025-06-02 18:19:27] Threads: 4
[2025-06-02 18:19:27] This job has been restarted, cleaning up previous attempt
[2025-06-02 18:19:27] Checking for CVMFS
[2025-06-02 18:19:27] No cvmfs_config command found, will try listing directly
[2025-06-02 18:19:27] CVMFS is ok
[2025-06-02 18:19:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 18:19:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 18:19:27] Further information can be found at the LHC@home message board.
[2025-06-02 18:19:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 18:19:27] Checking for apptainer binary...
[2025-06-02 18:19:27] which: no apptainer in ((null))
[2025-06-02 18:19:27] apptainer is not installed, using version from CVMFS
[2025-06-02 18:19:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 18:19:28] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-02 18:19:28] apptainer works
[2025-06-02 18:19:28] Set ATHENA_PROC_NUMBER=4
[2025-06-02 18:19:28] Set ATHENA_CORE_NUMBER=4
[2025-06-02 18:19:28] Starting ATLAS job with PandaID=6668326264
[2025-06-02 18:19:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 18:22:36] Job failed
[2025-06-02 18:22:36] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-02 18:22:36] ++ pwd
[2025-06-02 18:22:36] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot32/slots/0/
[2025-06-02 18:22:36] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot32/slots/0/
[2025-06-02 18:22:36] + mv ATLAS.root_0 EVNT.44871834._003226.pool.root.1
[2025-06-02 18:22:36] mv: 'ATLAS.root_0' and 'EVNT.44871834._003226.pool.root.1' are the same file
[2025-06-02 18:22:36] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-02 18:22:36] + umask 077
[2025-06-02 18:22:36] ++ date +%s
[2025-06-02 18:22:36] + ACCOUNTING_STARTTIME=1748881168
[2025-06-02 18:22:36] + echo 'Detecting resource accounting method available for the job.'
[2025-06-02 18:22:36] Detecting resource accounting method available for the job.
[2025-06-02 18:22:36] + JOB_ACCOUNTING=
[2025-06-02 18:22:36] + command -v arc-job-cgroup
[2025-06-02 18:22:36] + '[' -z '' ']'
[2025-06-02 18:22:36] + GNU_TIME=/usr/bin/time
[2025-06-02 18:22:36] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-02 18:22:36] Looking for /usr/bin/time tool for accounting measurements
[2025-06-02 18:22:36] + '[' '!' -z /usr/bin/time ']'
[2025-06-02 18:22:36] + /usr/bin/time --version
[2025-06-02 18:22:36] + echo 'GNU time found and will be used for job accounting.'
[2025-06-02 18:22:36] GNU time found and will be used for job accounting.
[2025-06-02 18:22:36] + JOB_ACCOUNTING=gnutime
[2025-06-02 18:22:36] + '[' -z gnutime ']'
[2025-06-02 18:22:36] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-02 18:22:36] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-02 18:22:36] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668326264.out
[2025-06-02 18:22:36] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668326264.out
[2025-06-02 18:22:36] + export PILOT_NOKILL=YES
[2025-06-02 18:22:36] + PILOT_NOKILL=YES
[2025-06-02 18:22:36] + export GRID_GLOBAL_JOBID=EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-02 18:22:36] + GRID_GLOBAL_JOBID=EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-02 18:22:36] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-02 18:22:36] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-02 18:22:36] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-02 18:22:36] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-02 18:22:36] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-02 18:22:36] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-02 18:22:36] ++ pwd
[2025-06-02 18:22:36] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot32/slots/0
[2025-06-02 18:22:36] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-02 18:22:36] ++ pwd
[2025-06-02 18:22:36] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot32/slots/0/log.44871837._082668.job.log.1
[2025-06-02 18:22:36] ++ pwd
[2025-06-02 18:22:36] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot32/slots/0/log.44871837._082668.job.log.1
[2025-06-02 18:22:36] ++ pwd
[2025-06-02 18:22:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot32/slots/0.diag
[2025-06-02 18:22:36] + '[' '!' -z '' ']'
[2025-06-02 18:22:36] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-02 18:22:36] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-02 18:22:36] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-02 18:22:36] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-02 18:22:36] + '[' '!' -z '' ']'
[2025-06-02 18:22:36] + '[' -z yes ']'
[2025-06-02 18:22:36] ++ pwd
[2025-06-02 18:22:36] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag
[2025-06-02 18:22:36] + runtimeenvironments=
[2025-06-02 18:22:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-02 18:22:36] + RTE_function_0 1
[2025-06-02 18:22:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-02 18:22:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-02 18:22:36] + export BOINC_APP=ATLAS
[2025-06-02 18:22:36] + BOINC_APP=ATLAS
[2025-06-02 18:22:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-02 18:22:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-02 18:22:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-02 18:22:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-02 18:22:36] + '[' -z 1 ']'
[2025-06-02 18:22:36] + '[' 1 == 1 ']'
[2025-06-02 18:22:36] + shift
[2025-06-02 18:22:36] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot32/slots/0/
[2025-06-02 18:22:36] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot32/slots/0/
[2025-06-02 18:22:36] + '[' 0 -ne 0 ']'
[2025-06-02 18:22:36] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-02 18:22:36] + '[' -f /etc/os-release ']'
[2025-06-02 18:22:36] +++ cat /etc/os-release
[2025-06-02 18:22:36] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-02 18:22:36] +++ NAME='CentOS Linux'
[2025-06-02 18:22:36] +++ VERSION='7 (Core)'
[2025-06-02 18:22:36] +++ ID=centos
[2025-06-02 18:22:36] +++ ID_LIKE='rhel fedora'
[2025-06-02 18:22:36] +++ VERSION_ID=7
[2025-06-02 18:22:36] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-02 18:22:36] +++ ANSI_COLOR='0;31'
[2025-06-02 18:22:36] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-02 18:22:36] +++ HOME_URL=https://www.centos.org/
[2025-06-02 18:22:36] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-02 18:22:36] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-02 18:22:36] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-02 18:22:36] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-02 18:22:36] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-02 18:22:36] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-02 18:22:36] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-02 18:22:36] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-02 18:22:36] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-02 18:22:36] + HOME=/scratch/boinc/var/slot32/slots/0
[2025-06-02 18:22:36] + export HOME
[2025-06-02 18:22:36] + cd /scratch/boinc/var/slot32/slots/0
[2025-06-02 18:22:36] + '[' '!' -z '' ']'
[2025-06-02 18:22:36] + '[' -z '' ']'
[2025-06-02 18:22:36] ++ /bin/hostname -f
[2025-06-02 18:22:36] + nodename=skurut05.grid.cesnet.cz
[2025-06-02 18:22:36] + echo nodename=skurut05.grid.cesnet.cz
[2025-06-02 18:22:36] + echo Processors=2
[2025-06-02 18:22:36] + echo Nodecount=1
[2025-06-02 18:22:36] + echo Benchmark=HEPSPEC:1.0
[2025-06-02 18:22:36] + executable=./runpilot2-wrapper.sh
[2025-06-02 18:22:36] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-02 18:22:36] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-02 18:22:36] ++ head -n 1
[2025-06-02 18:22:36] ++ tr -d '\0'
[2025-06-02 18:22:36] + line1='#!/bin/bash'
[2025-06-02 18:22:36] ++ echo '#!/bin/bash'
[2025-06-02 18:22:36] ++ sed -n 's/^#! *//p'
[2025-06-02 18:22:36] + shebang=/bin/bash
[2025-06-02 18:22:36] ++ echo /bin/bash
[2025-06-02 18:22:36] ++ awk '{print $1}'
[2025-06-02 18:22:36] + interpreter=/bin/bash
[2025-06-02 18:22:36] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-02 18:22:36] + '[' x/bin/bash = x ']'
[2025-06-02 18:22:36] + type /bin/bash
[2025-06-02 18:22:36] + '[' xgnutime = xgnutime ']'
[2025-06-02 18:22:36] + /usr/bin/time -o /scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-02 18:22:36] + RESULT=2
[2025-06-02 18:22:36] + sed -i -e /nodename=/d /scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag
[2025-06-02 18:22:36] ++ grep domain_name init_data.xml
[2025-06-02 18:22:36] ++ awk -F '>' '{print $2}'
[2025-06-02 18:22:36] ++ awk -F '<' '{print $1}'
[2025-06-02 18:22:36] ++ sed -e 's# #_#g'
[2025-06-02 18:22:36] + hostname=skurut05.grid.cesnet.cz
[2025-06-02 18:22:36] ++ grep user_name init_data.xml
[2025-06-02 18:22:36] ++ awk -F '>' '{print $2}'
[2025-06-02 18:22:36] ++ awk -F '<' '{print $1}'
[2025-06-02 18:22:36] ++ sed -e 's# #_#g'
[2025-06-02 18:22:36] + username=praguelcg2
[2025-06-02 18:22:36] + nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-02 18:22:36] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-02 18:22:36] + '[' -n 4 ']'
[2025-06-02 18:22:36] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag
[2025-06-02 18:22:36] + echo exitcode=2
[2025-06-02 18:22:36] + runtimeenvironments=
[2025-06-02 18:22:36] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-02 18:22:36] + RTE_function_0 2
[2025-06-02 18:22:36] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-02 18:22:36] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-02 18:22:36] + export BOINC_APP=ATLAS
[2025-06-02 18:22:36] + BOINC_APP=ATLAS
[2025-06-02 18:22:36] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-02 18:22:36] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-02 18:22:36] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-02 18:22:36] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-02 18:22:36] + '[' -z 2 ']'
[2025-06-02 18:22:36] + '[' 2 == 1 ']'
[2025-06-02 18:22:36] + '[' 0 -ne 0 ']'
[2025-06-02 18:22:36] + echo 'zip all output files'
[2025-06-02 18:22:36] + flist='*.diag '
[2025-06-02 18:22:36] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-02 18:22:36] + '[' -e ./heartbeat.json ']'
[2025-06-02 18:22:36] + flist='*.diag  ./heartbeat.json'
[2025-06-02 18:22:36] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-02 18:22:36] + '[' -e ./output.list ']'
[2025-06-02 18:22:36] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-02 18:22:36] + '[' -e ./log.44871837._082668.job.log.1 ']'
[2025-06-02 18:22:36] + flist='*.diag  ./heartbeat.json ./log.44871837._082668.job.log.1'
[2025-06-02 18:22:36] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-02 18:22:36] + '[' -e ./log.44871837._082668.job.log.1 ']'
[2025-06-02 18:22:36] + flist='*.diag  ./heartbeat.json ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1'
[2025-06-02 18:22:36] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-02 18:22:36] + '[' -e ./gmlog/ ']'
[2025-06-02 18:22:36] + '[' -f output.list ']'
[2025-06-02 18:22:36] + tar cvf result.tar.gz EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag ./heartbeat.json ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1
[2025-06-02 18:22:36] + '[' xgnutime = xcgroup ']'
[2025-06-02 18:22:36] + '[' -n '' ']'
[2025-06-02 18:22:36] + '[' -n '' ']'
[2025-06-02 18:22:36] ++ date +%s
[2025-06-02 18:22:36] + ACCOUNTING_ENDTIME=1748881356
[2025-06-02 18:22:36] ++ date -d '1970-01-01 UTC 1748881168 seconds' +%Y%m%d%H%M%SZ
[2025-06-02 18:22:36] + echo LRMSStartTime=20250602181928Z
[2025-06-02 18:22:36] ++ date -d '1970-01-01 UTC 1748881356 seconds' +%Y%m%d%H%M%SZ
[2025-06-02 18:22:36] + echo LRMSEndTime=20250602182236Z
[2025-06-02 18:22:36] + echo walltime=188
[2025-06-02 18:22:36] + echo exitcode=2
[2025-06-02 18:22:36] + exit 2
[2025-06-02 18:22:36] ./pilotlog.txt
[2025-06-02 18:22:36] ./log.44871837._082668.job.log.1
[2025-06-02 18:22:36] ./log.44871837._082668.job.log.tgz.1
[2025-06-02 18:22:36] ./runtime_log.err
[2025-06-02 18:22:36] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-02 18:22:36] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-02 18:22:36] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-02 18:22:36] ./pilot3/pilot/util/realtimelogger.py
[2025-06-02 18:22:36] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-02 18:22:36] ./pilot3/pilot/util/loggingsupport.py
[2025-06-02 18:22:36] ./PanDA_Pilot-6668326264/pilotlog.txt
[2025-06-02 18:22:36] ./PanDA_Pilot-6668326264/prmon.log
[2025-06-02 18:22:36] ./PanDA_Pilot-6668326264/log.EVNTtoHITS
[2025-06-02 18:22:36] ./PanDA_Pilot-6668326264/PoolFileCatalog.xml
[2025-06-02 18:22:36] ./runtime_log
12:19:24 (2437055): wrapper (7.7.26015): starting
12:19:24 (2437055): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 12:19:24] Arguments: --nthreads 4
[2025-06-03 12:19:24] Threads: 4
[2025-06-03 12:19:24] This job has been restarted, cleaning up previous attempt
[2025-06-03 12:19:24] Checking for CVMFS
[2025-06-03 12:19:24] No cvmfs_config command found, will try listing directly
[2025-06-03 12:19:24] CVMFS is ok
[2025-06-03 12:19:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 12:19:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 12:19:24] Further information can be found at the LHC@home message board.
[2025-06-03 12:19:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 12:19:24] Checking for apptainer binary...
[2025-06-03 12:19:24] which: no apptainer in ((null))
[2025-06-03 12:19:24] apptainer is not installed, using version from CVMFS
[2025-06-03 12:19:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 12:19:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-03 12:19:24] apptainer works
[2025-06-03 12:19:24] Set ATHENA_PROC_NUMBER=4
[2025-06-03 12:19:24] Set ATHENA_CORE_NUMBER=4
[2025-06-03 12:19:24] Starting ATLAS job with PandaID=6668326264
[2025-06-03 12:19:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot32/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 12:23:05] Job failed
[2025-06-03 12:23:05] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot32/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 12:23:05] ++ pwd
[2025-06-03 12:23:05] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot32/slots/0/
[2025-06-03 12:23:05] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot32/slots/0/
[2025-06-03 12:23:05] + mv ATLAS.root_0 EVNT.44871834._003226.pool.root.1
[2025-06-03 12:23:05] mv: 'ATLAS.root_0' and 'EVNT.44871834._003226.pool.root.1' are the same file
[2025-06-03 12:23:05] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 12:23:05] + umask 077
[2025-06-03 12:23:05] ++ date +%s
[2025-06-03 12:23:05] + ACCOUNTING_STARTTIME=1748945964
[2025-06-03 12:23:05] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 12:23:05] Detecting resource accounting method available for the job.
[2025-06-03 12:23:05] + JOB_ACCOUNTING=
[2025-06-03 12:23:05] + command -v arc-job-cgroup
[2025-06-03 12:23:05] + '[' -z '' ']'
[2025-06-03 12:23:05] + GNU_TIME=/usr/bin/time
[2025-06-03 12:23:05] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 12:23:05] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 12:23:05] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 12:23:05] + /usr/bin/time --version
[2025-06-03 12:23:05] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 12:23:05] GNU time found and will be used for job accounting.
[2025-06-03 12:23:05] + JOB_ACCOUNTING=gnutime
[2025-06-03 12:23:05] + '[' -z gnutime ']'
[2025-06-03 12:23:05] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 12:23:05] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 12:23:05] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668326264.out
[2025-06-03 12:23:05] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-28/BOINC_MCORE/6668326264.out
[2025-06-03 12:23:05] + export PILOT_NOKILL=YES
[2025-06-03 12:23:05] + PILOT_NOKILL=YES
[2025-06-03 12:23:05] + export GRID_GLOBAL_JOBID=EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-03 12:23:05] + GRID_GLOBAL_JOBID=EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-03 12:23:05] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-03 12:23:05] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn
[2025-06-03 12:23:05] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 12:23:05] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 12:23:05] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 12:23:05] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 12:23:05] ++ pwd
[2025-06-03 12:23:05] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot32/slots/0
[2025-06-03 12:23:05] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 12:23:05] ++ pwd
[2025-06-03 12:23:05] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot32/slots/0/log.44871837._082668.job.log.1
[2025-06-03 12:23:05] ++ pwd
[2025-06-03 12:23:05] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot32/slots/0/log.44871837._082668.job.log.1
[2025-06-03 12:23:05] ++ pwd
[2025-06-03 12:23:05] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot32/slots/0.diag
[2025-06-03 12:23:05] + '[' '!' -z '' ']'
[2025-06-03 12:23:05] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 12:23:05] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 12:23:05] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 12:23:05] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 12:23:05] + '[' '!' -z '' ']'
[2025-06-03 12:23:05] + '[' -z yes ']'
[2025-06-03 12:23:05] ++ pwd
[2025-06-03 12:23:05] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag
[2025-06-03 12:23:05] + runtimeenvironments=
[2025-06-03 12:23:05] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 12:23:05] + RTE_function_0 1
[2025-06-03 12:23:05] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 12:23:05] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 12:23:05] + export BOINC_APP=ATLAS
[2025-06-03 12:23:05] + BOINC_APP=ATLAS
[2025-06-03 12:23:05] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 12:23:05] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 12:23:05] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 12:23:05] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 12:23:05] + '[' -z 1 ']'
[2025-06-03 12:23:05] + '[' 1 == 1 ']'
[2025-06-03 12:23:05] + shift
[2025-06-03 12:23:05] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot32/slots/0/
[2025-06-03 12:23:05] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot32/slots/0/
[2025-06-03 12:23:05] + '[' 0 -ne 0 ']'
[2025-06-03 12:23:05] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 12:23:05] + '[' -f /etc/os-release ']'
[2025-06-03 12:23:05] +++ cat /etc/os-release
[2025-06-03 12:23:05] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 12:23:05] +++ NAME='CentOS Linux'
[2025-06-03 12:23:05] +++ VERSION='7 (Core)'
[2025-06-03 12:23:05] +++ ID=centos
[2025-06-03 12:23:05] +++ ID_LIKE='rhel fedora'
[2025-06-03 12:23:05] +++ VERSION_ID=7
[2025-06-03 12:23:05] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 12:23:05] +++ ANSI_COLOR='0;31'
[2025-06-03 12:23:05] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 12:23:05] +++ HOME_URL=https://www.centos.org/
[2025-06-03 12:23:05] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 12:23:05] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 12:23:05] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 12:23:05] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 12:23:05] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 12:23:05] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 12:23:05] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 12:23:05] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 12:23:05] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 12:23:05] + HOME=/scratch/boinc/var/slot32/slots/0
[2025-06-03 12:23:05] + export HOME
[2025-06-03 12:23:05] + cd /scratch/boinc/var/slot32/slots/0
[2025-06-03 12:23:05] + '[' '!' -z '' ']'
[2025-06-03 12:23:05] + '[' -z '' ']'
[2025-06-03 12:23:05] ++ /bin/hostname -f
[2025-06-03 12:23:05] + nodename=skurut05.grid.cesnet.cz
[2025-06-03 12:23:05] + echo nodename=skurut05.grid.cesnet.cz
[2025-06-03 12:23:05] + echo Processors=2
[2025-06-03 12:23:05] + echo Nodecount=1
[2025-06-03 12:23:05] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 12:23:05] + executable=./runpilot2-wrapper.sh
[2025-06-03 12:23:05] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 12:23:05] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 12:23:05] ++ tr -d '\0'
[2025-06-03 12:23:05] ++ head -n 1
[2025-06-03 12:23:05] + line1='#!/bin/bash'
[2025-06-03 12:23:05] ++ echo '#!/bin/bash'
[2025-06-03 12:23:05] ++ sed -n 's/^#! *//p'
[2025-06-03 12:23:05] + shebang=/bin/bash
[2025-06-03 12:23:05] ++ echo /bin/bash
[2025-06-03 12:23:05] ++ awk '{print $1}'
[2025-06-03 12:23:05] + interpreter=/bin/bash
[2025-06-03 12:23:05] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 12:23:05] + '[' x/bin/bash = x ']'
[2025-06-03 12:23:05] + type /bin/bash
[2025-06-03 12:23:05] + '[' xgnutime = xgnutime ']'
[2025-06-03 12:23:05] + /usr/bin/time -o /scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 12:23:05] + RESULT=2
[2025-06-03 12:23:05] + sed -i -e /nodename=/d /scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag
[2025-06-03 12:23:05] ++ grep domain_name init_data.xml
[2025-06-03 12:23:05] ++ awk -F '>' '{print $2}'
[2025-06-03 12:23:05] ++ awk -F '<' '{print $1}'
[2025-06-03 12:23:05] ++ sed -e 's# #_#g'
[2025-06-03 12:23:05] + hostname=skurut05.grid.cesnet.cz
[2025-06-03 12:23:05] ++ grep user_name init_data.xml
[2025-06-03 12:23:05] ++ awk -F '>' '{print $2}'
[2025-06-03 12:23:05] ++ awk -F '<' '{print $1}'
[2025-06-03 12:23:05] ++ sed -e 's# #_#g'
[2025-06-03 12:23:05] + username=praguelcg2
[2025-06-03 12:23:05] + nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-03 12:23:05] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-03 12:23:05] + '[' -n 4 ']'
[2025-06-03 12:23:05] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot32/slots/0/EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag
[2025-06-03 12:23:05] + echo exitcode=2
[2025-06-03 12:23:05] + runtimeenvironments=
[2025-06-03 12:23:05] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 12:23:05] + RTE_function_0 2
[2025-06-03 12:23:05] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 12:23:05] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 12:23:05] + export BOINC_APP=ATLAS
[2025-06-03 12:23:05] + BOINC_APP=ATLAS
[2025-06-03 12:23:05] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 12:23:05] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 12:23:05] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 12:23:05] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 12:23:05] + '[' -z 2 ']'
[2025-06-03 12:23:05] + '[' 2 == 1 ']'
[2025-06-03 12:23:05] + '[' 0 -ne 0 ']'
[2025-06-03 12:23:05] + echo 'zip all output files'
[2025-06-03 12:23:05] + flist='*.diag '
[2025-06-03 12:23:05] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-03 12:23:05] + '[' -e ./heartbeat.json ']'
[2025-06-03 12:23:05] + flist='*.diag  ./heartbeat.json'
[2025-06-03 12:23:05] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-03 12:23:05] + '[' -e ./output.list ']'
[2025-06-03 12:23:05] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-03 12:23:05] + '[' -e ./log.44871837._082668.job.log.1 ']'
[2025-06-03 12:23:05] + flist='*.diag  ./heartbeat.json ./log.44871837._082668.job.log.1'
[2025-06-03 12:23:05] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-03 12:23:05] + '[' -e ./log.44871837._082668.job.log.1 ']'
[2025-06-03 12:23:05] + flist='*.diag  ./heartbeat.json ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1'
[2025-06-03 12:23:05] + for f in ./heartbeat.json ./output.list ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1 ./gmlog/
[2025-06-03 12:23:05] + '[' -e ./gmlog/ ']'
[2025-06-03 12:23:05] + '[' -f output.list ']'
[2025-06-03 12:23:05] + tar cvf result.tar.gz EeaMDmB3Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0tbKDmWd7iRn.diag ./heartbeat.json ./log.44871837._082668.job.log.1 ./log.44871837._082668.job.log.1
[2025-06-03 12:23:05] + '[' xgnutime = xcgroup ']'
[2025-06-03 12:23:05] + '[' -n '' ']'
[2025-06-03 12:23:05] + '[' -n '' ']'
[2025-06-03 12:23:05] ++ date +%s
[2025-06-03 12:23:05] + ACCOUNTING_ENDTIME=1748946152
[2025-06-03 12:23:05] ++ date -d '1970-01-01 UTC 1748945964 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 12:23:05] + echo LRMSStartTime=20250603121924Z
[2025-06-03 12:23:05] ++ date -d '1970-01-01 UTC 1748946152 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 12:23:05] + echo LRMSEndTime=20250603122232Z
[2025-06-03 12:23:05] + echo walltime=188
[2025-06-03 12:23:05] + echo exitcode=2
[2025-06-03 12:23:05] + exit 2
[2025-06-03 12:23:05] ./pilotlog.txt
[2025-06-03 12:23:05] ./log.44871837._082668.job.log.1
[2025-06-03 12:23:05] ./log.44871837._082668.job.log.tgz.1
[2025-06-03 12:23:05] ./runtime_log.err
[2025-06-03 12:23:05] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 12:23:05] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 12:23:05] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 12:23:05] ./pilot3/pilot/util/realtimelogger.py
[2025-06-03 12:23:05] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 12:23:05] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 12:23:05] ./PanDA_Pilot-6668326264/pilotlog.txt
[2025-06-03 12:23:05] ./PanDA_Pilot-6668326264/prmon.log
[2025-06-03 12:23:05] ./PanDA_Pilot-6668326264/log.EVNTtoHITS
[2025-06-03 12:23:05] ./PanDA_Pilot-6668326264/PoolFileCatalog.xml
[2025-06-03 12:23:05] ./runtime_log
12:41:10 (2437055): run_atlas exited; CPU time 19.215643
12:41:10 (2437055): app exit status: 0x1
12:41:10 (2437055): called boinc_finish(195)

</stderr_txt>
]]>

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