Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:49:50 (31234): wrapper (7.7.26015): starting
05:49:50 (31234): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 05:49:50] Arguments: --nthreads 8
[2025-05-29 05:49:50] Threads: 8
[2025-05-29 05:49:50] Checking for CVMFS
[2025-05-29 05:49:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 05:49:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 05:49:51] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 05:49:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 05:49:51] 2.11.2.0 1304 24046 90740 146542 0 114 13636791 25165824 4353 130560 0 13972366 99.810 14892793 1830 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 05:49:51] CVMFS is ok
[2025-05-29 05:49:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 05:49:51] Checking for apptainer binary...
[2025-05-29 05:49:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 05:49:51] Running /usr/bin/apptainer --version
[2025-05-29 05:49:51] apptainer version 1.3.2-1.el7
[2025-05-29 05:49:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 05:49:53] cg-vwn245.simple-grid.lan
[2025-05-29 05:49:53] apptainer works
[2025-05-29 05:49:53] Set ATHENA_PROC_NUMBER=8
[2025-05-29 05:49:53] Set ATHENA_CORE_NUMBER=8
[2025-05-29 05:49:53] Starting ATLAS job with PandaID=6668326308
[2025-05-29 05:49:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/18 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 16:28:27]  *** The last 200 lines of the pilot log: ***
[2025-05-29 16:28:27] 2025-05-29 08:45:21,820 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 16:28:27] 2025-05-29 08:45:21,821 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 16:28:27] 2025-05-29 08:45:21,821 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 16:28:27] 2025-05-29 08:45:21,821 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 16:28:27] 2025-05-29 08:45:21,827 | INFO     | fitting pss+swap vs Time
[2025-05-29 16:28:27] 2025-05-29 08:45:21,828 | INFO     | sum of square deviations: 7407141672.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,834 | INFO     | sum of deviations: 16357538387.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,835 | INFO     | mean x: 1748499418.5
[2025-05-29 16:28:27] 2025-05-29 08:45:21,835 | INFO     | mean y: 2487092.0625
[2025-05-29 16:28:27] 2025-05-29 08:45:21,835 | INFO     | -- intersect: -3858806187.351493
[2025-05-29 16:28:27] 2025-05-29 08:45:21,835 | INFO     | intersect: -3858806187.351493
[2025-05-29 16:28:27] 2025-05-29 08:45:21,836 | INFO     | chi2: 2.388803949202874
[2025-05-29 16:28:27] 2025-05-29 08:45:21,836 | INFO     | sum of square deviations: 7028008982.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,839 | INFO     | sum of deviations: 35034808381.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,839 | INFO     | mean x: 1748499266.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,839 | INFO     | mean y: 2494496.2049469966
[2025-05-29 16:28:27] 2025-05-29 08:45:21,839 | INFO     | -- intersect: -8713820024.098429
[2025-05-29 16:28:27] 2025-05-29 08:45:21,839 | INFO     | intersect: -8713820024.098429
[2025-05-29 16:28:27] 2025-05-29 08:45:21,840 | INFO     | chi2: 1.613852462455858
[2025-05-29 16:28:27] 2025-05-29 08:45:21,840 | INFO     | current chi2=1.613852462455858 (change=32.44098315416849 %)
[2025-05-29 16:28:27] 2025-05-29 08:45:21,840 | INFO     | sum of square deviations: 6662039329.5
[2025-05-29 16:28:27] 2025-05-29 08:45:21,860 | INFO     | sum of deviations: 34227912886.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,861 | INFO     | mean x: 1748499113.5
[2025-05-29 16:28:27] 2025-05-29 08:45:21,861 | INFO     | mean y: 2494159.892086331
[2025-05-29 16:28:27] 2025-05-29 08:45:21,861 | INFO     | -- intersect: -8980862493.845636
[2025-05-29 16:28:27] 2025-05-29 08:45:21,861 | INFO     | intersect: -8980862493.845636
[2025-05-29 16:28:27] 2025-05-29 08:45:21,861 | INFO     | chi2: 1.6144642149166912
[2025-05-29 16:28:27] 2025-05-29 08:45:21,862 | INFO     | current chi2=1.6144642149166912 (change=-0.03790634367545661 %)
[2025-05-29 16:28:27] 2025-05-29 08:45:21,862 | INFO     | right removable region: 277
[2025-05-29 16:28:27] 2025-05-29 08:45:21,862 | INFO     | sum of square deviations: 7028008982.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,865 | INFO     | sum of deviations: -29044378533.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,865 | INFO     | mean x: 1748499571.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,865 | INFO     | mean y: 2505217.749116608
[2025-05-29 16:28:27] 2025-05-29 08:45:21,865 | INFO     | -- intersect: 7228461179.811675
[2025-05-29 16:28:27] 2025-05-29 08:45:21,865 | INFO     | intersect: 7228461179.811675
[2025-05-29 16:28:27] 2025-05-29 08:45:21,866 | INFO     | chi2: 0.9171094312860895
[2025-05-29 16:28:27] 2025-05-29 08:45:21,866 | INFO     | current chi2=0.9171094312860895 (change=61.60800757248739 %)
[2025-05-29 16:28:27] 2025-05-29 08:45:21,866 | INFO     | sum of square deviations: 6662039329.5
[2025-05-29 16:28:27] 2025-05-29 08:45:21,869 | INFO     | sum of deviations: -30068057871.5
[2025-05-29 16:28:27] 2025-05-29 08:45:21,869 | INFO     | mean x: 1748499723.5
[2025-05-29 16:28:27] 2025-05-29 08:45:21,869 | INFO     | mean y: 2505629.5575539568
[2025-05-29 16:28:27] 2025-05-29 08:45:21,869 | INFO     | -- intersect: 7894081808.295835
[2025-05-29 16:28:27] 2025-05-29 08:45:21,870 | INFO     | intersect: 7894081808.295835
[2025-05-29 16:28:27] 2025-05-29 08:45:21,870 | INFO     | chi2: 0.9066045810821673
[2025-05-29 16:28:27] 2025-05-29 08:45:21,870 | INFO     | current chi2=0.9066045810821673 (change=1.1454303974598594 %)
[2025-05-29 16:28:27] 2025-05-29 08:45:21,870 | INFO     | left removable region: 20
[2025-05-29 16:28:27] 2025-05-29 08:45:21,871 | INFO     | sum of square deviations: 5263458688.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,873 | INFO     | sum of deviations: 6768550789.000001
[2025-05-29 16:28:27] 2025-05-29 08:45:21,873 | INFO     | mean x: 1748499693.0
[2025-05-29 16:28:27] 2025-05-29 08:45:21,873 | INFO     | mean y: 2505041.6381322956
[2025-05-29 16:28:27] 2025-05-29 08:45:21,873 | INFO     | -- intersect: -2245980161.3716745
[2025-05-29 16:28:27] 2025-05-29 08:45:21,873 | INFO     | intersect: -2245980161.3716745
[2025-05-29 16:28:27] 2025-05-29 08:45:21,882 | INFO     | chi2: 0.038188990955660994
[2025-05-29 16:28:27] 2025-05-29 08:45:21,882 | INFO     | -- intersect: -2245980161.3716745
[2025-05-29 16:28:27] 2025-05-29 08:45:21,883 | INFO     | current memory leak: 1.29 B/s (using 257 data points, chi2=0.04)
[2025-05-29 16:28:27] 2025-05-29 08:45:21,883 | INFO     | ..............................
[2025-05-29 16:28:27] 2025-05-29 08:45:21,884 | INFO     | . Timing measurements:
[2025-05-29 16:28:27] 2025-05-29 08:45:21,884 | INFO     | . get job = 0 s
[2025-05-29 16:28:27] 2025-05-29 08:45:21,884 | INFO     | . initial setup = 2 s
[2025-05-29 16:28:27] 2025-05-29 08:45:21,884 | INFO     | . payload setup = 12 s
[2025-05-29 16:28:27] 2025-05-29 08:45:21,884 | INFO     | . stage-in = 0 s
[2025-05-29 16:28:27] 2025-05-29 08:45:21,884 | INFO     | . payload execution = 17578 s
[2025-05-29 16:28:27] 2025-05-29 08:45:21,884 | INFO     | . stage-out = 3 s
[2025-05-29 16:28:27] 2025-05-29 08:45:21,884 | INFO     | . log creation = 1 s
[2025-05-29 16:28:27] 2025-05-29 08:45:21,884 | INFO     | ..............................
[2025-05-29 16:28:27] 2025-05-29 08:45:22,054 | INFO     | 
[2025-05-29 16:28:27] 2025-05-29 08:45:22,054 | INFO     | job summary report
[2025-05-29 16:28:27] 2025-05-29 08:45:22,054 | INFO     | --------------------------------------------------
[2025-05-29 16:28:27] 2025-05-29 08:45:22,054 | INFO     | PanDA job id: 6668326308
[2025-05-29 16:28:27] 2025-05-29 08:45:22,054 | INFO     | task id: 44871837
[2025-05-29 16:28:27] 2025-05-29 08:45:22,054 | INFO     | errors: (none)
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | pilot state: finished 
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | transexitcode: 0
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | exeerrorcode: 0
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | exeerrordiag: 
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | exitcode: 0
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | exitmsg: OK
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | cpuconsumptiontime: 67220 s
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | nevents: 400
[2025-05-29 16:28:27] 2025-05-29 08:45:22,055 | INFO     | neventsw: 0
[2025-05-29 16:28:27] 2025-05-29 08:45:22,056 | INFO     | pid: 11100
[2025-05-29 16:28:27] 2025-05-29 08:45:22,056 | INFO     | pgrp: 11100
[2025-05-29 16:28:27] 2025-05-29 08:45:22,056 | INFO     | corecount: 8
[2025-05-29 16:28:27] 2025-05-29 08:45:22,056 | INFO     | event service: False
[2025-05-29 16:28:27] 2025-05-29 08:45:22,056 | INFO     | sizes: {0: 2405064, 1: 2405263, 11: 2405469, 12: 2405497, 17595: 2436657, 17600: 2445600, 17602: 2445784, 17688: 2445954}
[2025-05-29 16:28:27] 2025-05-29 08:45:22,056 | INFO     | --------------------------------------------------
[2025-05-29 16:28:27] 2025-05-29 08:45:22,056 | INFO     | 
[2025-05-29 16:28:27] 2025-05-29 08:45:22,056 | INFO     | executing command: ls -lF /var/lib/boinc/slots/18
[2025-05-29 16:28:27] 2025-05-29 08:45:22,644 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,644 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,645 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,645 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,645 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,645 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,645 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,645 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,645 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,645 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,645 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,646 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 16:28:27] 2025-05-29 08:45:22,646 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,646 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 16:28:27] 2025-05-29 08:45:22,646 | INFO     | job 6668326308 has completed (purged errors)
[2025-05-29 16:28:27] 2025-05-29 08:45:22,646 | INFO     | overall cleanup function is called
[2025-05-29 16:28:27] 2025-05-29 08:45:23,656 | INFO     | --- collectZombieJob: --- 10, [11100]
[2025-05-29 16:28:27] 2025-05-29 08:45:23,656 | INFO     | zombie collector waiting for pid 11100
[2025-05-29 16:28:27] 2025-05-29 08:45:23,656 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 16:28:27] 2025-05-29 08:45:23,656 | INFO     | collected zombie processes
[2025-05-29 16:28:27] 2025-05-29 08:45:23,656 | INFO     | will attempt to kill all subprocesses of pid=11100
[2025-05-29 16:28:27] 2025-05-29 08:45:23,819 | INFO     | PID=2555 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-05-29 16:28:27] 2025-05-29 08:45:23,820 | INFO     | .. there are 9 such processes running
[2025-05-29 16:28:27] 2025-05-29 08:45:23,841 | INFO     | process IDs to be killed: [11100] (in reverse order)
[2025-05-29 16:28:27] 2025-05-29 08:45:24,426 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 16:28:27] 2025-05-29 08:45:24,427 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 16:28:27] 2025-05-29 08:45:24,430 | INFO     | did not find any defunct processes belonging to 11100
[2025-05-29 16:28:27] 2025-05-29 08:45:24,433 | INFO     | did not find any defunct processes belonging to 11100
[2025-05-29 16:28:27] 2025-05-29 08:45:24,434 | INFO     | ready for new job
[2025-05-29 16:28:27] 2025-05-29 08:45:24,434 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 16:28:27] 2025-05-29 08:45:24,436 | INFO     | **************************************
[2025-05-29 16:28:27] 2025-05-29 08:45:24,436 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 16:28:27] 2025-05-29 08:45:24,436 | INFO     | **************************************
[2025-05-29 16:28:27] 2025-05-29 08:45:24,436 | INFO     | 
[2025-05-29 16:28:27] 2025-05-29 08:45:24,437 | INFO     | pilot is running in a VM
[2025-05-29 16:28:27] 2025-05-29 08:45:24,437 | INFO     | architecture information:
[2025-05-29 16:28:27] 2025-05-29 08:45:24,445 | INFO     | executing command: cat /etc/os-release
[2025-05-29 16:28:27] 2025-05-29 08:45:24,739 | INFO     | cat /etc/os-release:
[2025-05-29 16:28:27] NAME="CentOS Linux"
[2025-05-29 16:28:27] VERSION="7 (Core)"
[2025-05-29 16:28:27] ID="centos"
[2025-05-29 16:28:27] ID_LIKE="rhel fedora"
[2025-05-29 16:28:27] VERSION_ID="7"
[2025-05-29 16:28:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 16:28:27] ANSI_COLOR="0;31"
[2025-05-29 16:28:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 16:28:27] HOME_URL="https://www.centos.org/"
[2025-05-29 16:28:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 16:28:27] 
[2025-05-29 16:28:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 16:28:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 16:28:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 16:28:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 16:28:27] 
[2025-05-29 16:28:27] 2025-05-29 08:45:24,740 | INFO     | **************************************
[2025-05-29 16:28:27] 2025-05-29 08:45:25,243 | INFO     | executing command: df -mP /var/lib/boinc/slots/18
[2025-05-29 16:28:27] 2025-05-29 08:45:25,540 | INFO     | sufficient remaining disk space (496254320640 B)
[2025-05-29 16:28:27] 2025-05-29 08:45:25,541 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 16:28:27] 2025-05-29 08:45:25,541 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 16:28:27] 2025-05-29 08:45:25,541 | INFO     | update_server=False
[2025-05-29 16:28:27] 2025-05-29 08:45:25,541 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 16:28:27] 2025-05-29 08:45:25,541 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 16:28:27] 2025-05-29 08:45:25,541 | INFO     | aborting loop
[2025-05-29 16:28:27] 2025-05-29 08:45:25,827 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 16:28:27] 2025-05-29 08:45:25,827 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 16:28:27] 2025-05-29 08:45:25,827 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 16:28:27] 2025-05-29 08:45:26,071 | INFO     | all data control threads have been joined
[2025-05-29 16:28:27] 2025-05-29 08:45:26,547 | INFO     | [job] retrieve thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:26,547 | INFO     | [job] job monitor thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:26,745 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:26,863 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 16:28:27] 2025-05-29 08:45:26,875 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:26,875 | INFO     | [data] copytool_in thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:26,889 | INFO     | all payload control threads have been joined
[2025-05-29 16:28:27] 2025-05-29 08:45:26,924 | INFO     | [payload] failed_post thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:27,020 | INFO     | [job] validate thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:27,068 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 16:28:27] 2025-05-29 08:45:27,077 | INFO     | [data] control thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:27,090 | INFO     | all job control threads have been joined
[2025-05-29 16:28:27] 2025-05-29 08:45:27,112 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 16:28:27] 2025-05-29 08:45:27,246 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:27,489 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:27,789 | INFO     | [payload] validate_post thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:27,895 | INFO     | [payload] control thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:28,074 | INFO     | [job] queue monitor thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:28,095 | INFO     | [job] control thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:28,870 | INFO     | [data] copytool_out thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:31,121 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 16:28:27] 2025-05-29 08:45:32,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140367696746304)>', '<ExcThread(monitor, started 140367039031040)>']
[2025-05-29 16:28:27] 2025-05-29 08:45:32,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 16:28:27] 2025-05-29 08:45:32,867 | INFO     | [monitor] control thread has ended
[2025-05-29 16:28:27] 2025-05-29 08:45:37,056 | INFO     | all workflow threads have been joined
[2025-05-29 16:28:27] 2025-05-29 08:45:37,056 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 16:28:27] 2025-05-29 08:45:37,056 | INFO     | traces error code: 0
[2025-05-29 16:28:27] 2025-05-29 08:45:37,057 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 16:28:27] 2025-05-29 08:45:37,435 [wrapper] ==== pilot stdout END ====
[2025-05-29 16:28:27] 2025-05-29 08:45:37,533 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 16:28:27] 2025-05-29 08:45:37,655 [wrapper] pilotpid: 2555
[2025-05-29 16:28:27] 2025-05-29 08:45:37,733 [wrapper] Pilot exit status: 0
[2025-05-29 16:28:27] 2025-05-29 08:45:38,179 [wrapper] pandaids: 6668326308
[2025-05-29 16:28:27] 2025-05-29 08:45:39,055 [wrapper] cleanup supervisor_pilot  9146 2556
[2025-05-29 16:28:27] 2025-05-29 08:45:39,105 [wrapper] Test setup, not cleaning
[2025-05-29 16:28:27] 2025-05-29 08:45:39,150 [wrapper] apfmon messages muted
[2025-05-29 16:28:27] 2025-05-29 08:45:39,203 [wrapper] ==== wrapper stdout END ====
[2025-05-29 16:28:27] 2025-05-29 08:45:39,277 [wrapper] ==== wrapper stderr END ====
[2025-05-29 16:28:27]  *** Error codes and diagnostics ***
[2025-05-29 16:28:27]     "exeErrorCode": 0,
[2025-05-29 16:28:27]     "exeErrorDiag": "",
[2025-05-29 16:28:27]     "pilotErrorCode": 0,
[2025-05-29 16:28:27]     "pilotErrorDiag": "",
[2025-05-29 16:28:27]  *** Listing of results directory ***
[2025-05-29 16:28:27] total 413060
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc      5111 May 28 12:20 queuedata.json
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc    495897 May 28 12:20 pilot3.tar.gz
[2025-05-29 16:28:27] -rwx------. 1 boinc boinc     37140 May 28 12:21 runpilot2-wrapper.sh
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc       100 May 29 05:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 16:28:27] -rwxr-xr-x. 1 boinc boinc      7986 May 29 05:49 run_atlas
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc       105 May 29 05:49 job.xml
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc      6373 May 29 05:49 init_data.xml
[2025-05-29 16:28:27] -rw-r--r--. 2 boinc boinc 221784102 May 29 05:49 EVNT.44871834._003228.pool.root.1
[2025-05-29 16:28:27] -rw-r--r--. 2 boinc boinc     15093 May 29 05:49 start_atlas.sh
[2025-05-29 16:28:27] drwxrwx--x. 2 boinc boinc        68 May 29 05:49 shared
[2025-05-29 16:28:27] -rw-r--r--. 2 boinc boinc    508874 May 29 05:49 input.tar.gz
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc         0 May 29 05:49 boinc_lockfile
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc      2559 May 29 05:49 pandaJob.out
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc    993415 May 29 05:50 agis_schedconf.cvmfs.json
[2025-05-29 16:28:27] drwx------. 4 boinc boinc      4096 May 29 05:50 pilot3
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc 193489427 May 29 10:42 HITS.44871837._082712.pool.root.1
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc       531 May 29 10:42 boinc_task_state.xml
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc      1019 May 29 10:43 memory_monitor_summary.json
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc   1603667 May 29 10:43 agis_ddmendpoints.agis.ALL.json
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc    415134 May 29 10:43 log.44871837._082712.job.log.tgz.1
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc        95 May 29 10:45 pilot_heartbeat.json
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc      7688 May 29 10:45 heartbeat.json
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc      4417 May 29 10:45 pilotlog.txt
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc   1516877 May 29 10:45 log.44871837._082712.job.log.1
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc       357 May 29 10:45 output.list
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc       620 May 29 10:45 runtime_log
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc   1955840 May 29 10:45 result.tar.gz
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc      8673 May 29 10:45 runtime_log.err
[2025-05-29 16:28:27] -rw-------. 1 boinc boinc       657 May 29 10:45 LT5LDm95Se7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMubKDm13Wo8n.diag
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc      8192 May 29 16:28 boinc_mmap_file
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc        28 May 29 16:28 wrapper_checkpoint.txt
[2025-05-29 16:28:27] -rw-r--r--. 1 boinc boinc     20531 May 29 16:28 stderr.txt
[2025-05-29 16:28:28] HITS file was successfully produced:
[2025-05-29 16:28:28] -rw-------. 1 boinc boinc 193489427 May 29 10:42 shared/HITS.pool.root.1
[2025-05-29 16:28:28]  *** Contents of shared directory: ***
[2025-05-29 16:28:28] total 407972
[2025-05-29 16:28:28] -rw-r--r--. 2 boinc boinc 221784102 May 29 05:49 ATLAS.root_0
[2025-05-29 16:28:28] -rw-r--r--. 2 boinc boinc     15093 May 29 05:49 start_atlas.sh
[2025-05-29 16:28:28] -rw-r--r--. 2 boinc boinc    508874 May 29 05:49 input.tar.gz
[2025-05-29 16:28:28] -rw-------. 1 boinc boinc 193489427 May 29 10:42 HITS.pool.root.1
[2025-05-29 16:28:28] -rw-------. 1 boinc boinc   1955840 May 29 10:45 result.tar.gz
16:28:29 (31234): run_atlas exited; CPU time 67449.984091
16:28:29 (31234): called boinc_finish(0)

</stderr_txt>
]]>

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