Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:03:33 (29157): wrapper (7.7.26015): starting
10:03:33 (29157): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 10:03:33] Arguments: --nthreads 8
[2025-05-29 10:03:33] Threads: 8
[2025-05-29 10:03:33] Checking for CVMFS
[2025-05-29 10:03:33] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 10:03:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 10:03:34] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 10:03:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 10:03:34] 2.11.2.0 22062 24485 97192 146547 0 114 23355980 25165825 4097 130560 0 13780257 99.796 14312809 1766 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 10:03:34] CVMFS is ok
[2025-05-29 10:03:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 10:03:34] Checking for apptainer binary...
[2025-05-29 10:03:34] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 10:03:34] Running /usr/bin/apptainer --version
[2025-05-29 10:03:34] apptainer version 1.3.2-1.el7
[2025-05-29 10:03:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 10:03:35] cg-vwn481.simple-grid.lan
[2025-05-29 10:03:35] apptainer works
[2025-05-29 10:03:35] Set ATHENA_PROC_NUMBER=8
[2025-05-29 10:03:35] Set ATHENA_CORE_NUMBER=8
[2025-05-29 10:03:35] Starting ATLAS job with PandaID=6666949033
[2025-05-29 10:03:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 16:03:34]  *** The last 200 lines of the pilot log: ***
[2025-05-29 16:03:34] 2025-05-29 12:58:25,525 | INFO     | using path: /var/lib/boinc/slots/14/PanDA_Pilot-6666949033/memory_monitor_summary.json (trf name=prmon)
[2025-05-29 16:03:34] 2025-05-29 12:58:25,525 | INFO     | extracted standard info from prmon json
[2025-05-29 16:03:34] 2025-05-29 12:58:25,525 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 16:03:34] 2025-05-29 12:58:25,526 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 16:03:34] 2025-05-29 12:58:25,526 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 16:03:34] 2025-05-29 12:58:25,526 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 16:03:34] 2025-05-29 12:58:25,532 | INFO     | fitting pss+swap vs Time
[2025-05-29 16:03:34] 2025-05-29 12:58:25,533 | INFO     | sum of square deviations: 7407141672.0
[2025-05-29 16:03:34] 2025-05-29 12:58:25,535 | INFO     | sum of deviations: 35495519329.5
[2025-05-29 16:03:34] 2025-05-29 12:58:25,536 | INFO     | mean x: 1748514641.5
[2025-05-29 16:03:34] 2025-05-29 12:58:25,536 | INFO     | mean y: 2492729.28125
[2025-05-29 16:03:34] 2025-05-29 12:58:25,536 | INFO     | -- intersect: -8376506620.749949
[2025-05-29 16:03:34] 2025-05-29 12:58:25,536 | INFO     | intersect: -8376506620.749949
[2025-05-29 16:03:34] 2025-05-29 12:58:25,536 | INFO     | chi2: 2.2433237494176628
[2025-05-29 16:03:34] 2025-05-29 12:58:25,537 | INFO     | sum of square deviations: 7028008982.0
[2025-05-29 16:03:34] 2025-05-29 12:58:25,540 | INFO     | sum of deviations: 53668564818.0
[2025-05-29 16:03:34] 2025-05-29 12:58:25,540 | INFO     | mean x: 1748514489.0
[2025-05-29 16:03:34] 2025-05-29 12:58:25,540 | INFO     | mean y: 2499930.632508834
[2025-05-29 16:03:34] 2025-05-29 12:58:25,540 | INFO     | -- intersect: -13349825518.644876
[2025-05-29 16:03:34] 2025-05-29 12:58:25,540 | INFO     | intersect: -13349825518.644876
[2025-05-29 16:03:34] 2025-05-29 12:58:25,541 | INFO     | chi2: 1.4672758339730927
[2025-05-29 16:03:34] 2025-05-29 12:58:25,541 | INFO     | current chi2=1.4672758339730927 (change=34.5936655663732 %)
[2025-05-29 16:03:34] 2025-05-29 12:58:25,541 | INFO     | sum of square deviations: 6662039329.5
[2025-05-29 16:03:34] 2025-05-29 12:58:25,544 | INFO     | sum of deviations: 52460486993.5
[2025-05-29 16:03:34] 2025-05-29 12:58:25,544 | INFO     | mean x: 1748514336.5
[2025-05-29 16:03:34] 2025-05-29 12:58:25,544 | INFO     | mean y: 2499427.176258993
[2025-05-29 16:03:34] 2025-05-29 12:58:25,545 | INFO     | -- intersect: -13766244507.091524
[2025-05-29 16:03:34] 2025-05-29 12:58:25,545 | INFO     | intersect: -13766244507.091524
[2025-05-29 16:03:34] 2025-05-29 12:58:25,545 | INFO     | chi2: 1.4676389142325967
[2025-05-29 16:03:34] 2025-05-29 12:58:25,545 | INFO     | current chi2=1.4676389142325967 (change=-0.024745194536523882 %)
[2025-05-29 16:03:34] 2025-05-29 12:58:25,545 | INFO     | right removable region: 277
[2025-05-29 16:03:34] 2025-05-29 12:58:25,546 | INFO     | sum of square deviations: 7028008982.0
[2025-05-29 16:03:34] 2025-05-29 12:58:25,548 | INFO     | sum of deviations: -8073606383.0
[2025-05-29 16:03:34] 2025-05-29 12:58:25,549 | INFO     | mean x: 1748514794.0
[2025-05-29 16:03:34] 2025-05-29 12:58:25,549 | INFO     | mean y: 2510113.5017667846
[2025-05-29 16:03:34] 2025-05-29 12:58:25,549 | INFO     | -- intersect: 2011161530.6761124
[2025-05-29 16:03:34] 2025-05-29 12:58:25,549 | INFO     | intersect: 2011161530.6761124
[2025-05-29 16:03:34] 2025-05-29 12:58:25,549 | INFO     | chi2: 0.8352726728450659
[2025-05-29 16:03:34] 2025-05-29 12:58:25,550 | INFO     | current chi2=0.8352726728450659 (change=62.7662893926081 %)
[2025-05-29 16:03:34] 2025-05-29 12:58:25,550 | INFO     | sum of square deviations: 6662039329.5
[2025-05-29 16:03:34] 2025-05-29 12:58:25,553 | INFO     | sum of deviations: -4579601870.499998
[2025-05-29 16:03:34] 2025-05-29 12:58:25,553 | INFO     | mean x: 1748514946.5
[2025-05-29 16:03:34] 2025-05-29 12:58:25,553 | INFO     | mean y: 2508634.4136690646
[2025-05-29 16:03:34] 2025-05-29 12:58:25,553 | INFO     | -- intersect: 1204468263.221442
[2025-05-29 16:03:34] 2025-05-29 12:58:25,553 | INFO     | intersect: 1204468263.221442
[2025-05-29 16:03:34] 2025-05-29 12:58:25,554 | INFO     | chi2: 0.8131234373548797
[2025-05-29 16:03:34] 2025-05-29 12:58:25,554 | INFO     | current chi2=0.8131234373548797 (change=2.6517371165445347 %)
[2025-05-29 16:03:34] 2025-05-29 12:58:25,554 | INFO     | left removable region: 20
[2025-05-29 16:03:34] 2025-05-29 12:58:25,554 | INFO     | sum of square deviations: 5263458688.0
[2025-05-29 16:03:34] 2025-05-29 12:58:25,556 | INFO     | sum of deviations: 13177295883.999998
[2025-05-29 16:03:34] 2025-05-29 12:58:25,557 | INFO     | mean x: 1748514916.0
[2025-05-29 16:03:34] 2025-05-29 12:58:25,557 | INFO     | mean y: 2516141.4357976653
[2025-05-29 16:03:34] 2025-05-29 12:58:25,557 | INFO     | -- intersect: -4374966379.373037
[2025-05-29 16:03:34] 2025-05-29 12:58:25,557 | INFO     | intersect: -4374966379.373037
[2025-05-29 16:03:34] 2025-05-29 12:58:25,557 | INFO     | chi2: 0.0018275340563966888
[2025-05-29 16:03:34] 2025-05-29 12:58:25,558 | INFO     | -- intersect: -4374966379.373037
[2025-05-29 16:03:34] 2025-05-29 12:58:25,558 | INFO     | current memory leak: 2.50 B/s (using 257 data points, chi2=0.00)
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | ..............................
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | . Timing measurements:
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | . get job = 0 s
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | . initial setup = 2 s
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | . payload setup = 11 s
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | . stage-in = 0 s
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | . payload execution = 17540 s
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | . stage-out = 3 s
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | . log creation = 1 s
[2025-05-29 16:03:34] 2025-05-29 12:58:25,559 | INFO     | ..............................
[2025-05-29 16:03:34] 2025-05-29 12:58:26,191 | INFO     | 
[2025-05-29 16:03:34] 2025-05-29 12:58:26,191 | INFO     | job summary report
[2025-05-29 16:03:34] 2025-05-29 12:58:26,191 | INFO     | --------------------------------------------------
[2025-05-29 16:03:34] 2025-05-29 12:58:26,191 | INFO     | PanDA job id: 6666949033
[2025-05-29 16:03:34] 2025-05-29 12:58:26,191 | INFO     | task id: 44871837
[2025-05-29 16:03:34] 2025-05-29 12:58:26,191 | INFO     | errors: (none)
[2025-05-29 16:03:34] 2025-05-29 12:58:26,191 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 16:03:34] 2025-05-29 12:58:26,191 | INFO     | pilot state: finished 
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | transexitcode: 0
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | exeerrorcode: 0
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | exeerrordiag: 
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | exitcode: 0
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | exitmsg: OK
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | cpuconsumptiontime: 67730 s
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | nevents: 400
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | neventsw: 0
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | pid: 9293
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | pgrp: 9293
[2025-05-29 16:03:34] 2025-05-29 12:58:26,192 | INFO     | corecount: 8
[2025-05-29 16:03:34] 2025-05-29 12:58:26,193 | INFO     | event service: False
[2025-05-29 16:03:34] 2025-05-29 12:58:26,193 | INFO     | sizes: {0: 2405008, 1: 2405263, 9: 2405469, 12: 2405497, 17556: 2436556, 17559: 2445499, 17563: 2445683, 17649: 2445853}
[2025-05-29 16:03:34] 2025-05-29 12:58:26,193 | INFO     | --------------------------------------------------
[2025-05-29 16:03:34] 2025-05-29 12:58:26,193 | INFO     | 
[2025-05-29 16:03:34] 2025-05-29 12:58:26,193 | INFO     | executing command: ls -lF /var/lib/boinc/slots/14
[2025-05-29 16:03:34] 2025-05-29 12:58:26,431 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,431 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,432 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,432 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,432 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,432 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,432 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,432 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,432 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,432 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,432 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 16:03:34] 2025-05-29 12:58:26,433 | INFO     | job 6666949033 has completed (purged errors)
[2025-05-29 16:03:34] 2025-05-29 12:58:26,434 | INFO     | overall cleanup function is called
[2025-05-29 16:03:34] 2025-05-29 12:58:27,443 | INFO     | --- collectZombieJob: --- 10, [9293]
[2025-05-29 16:03:34] 2025-05-29 12:58:27,443 | INFO     | zombie collector waiting for pid 9293
[2025-05-29 16:03:34] 2025-05-29 12:58:27,443 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 16:03:34] 2025-05-29 12:58:27,443 | INFO     | collected zombie processes
[2025-05-29 16:03:34] 2025-05-29 12:58:27,443 | INFO     | will attempt to kill all subprocesses of pid=9293
[2025-05-29 16:03:34] 2025-05-29 12:58:27,555 | INFO     | process IDs to be killed: [9293] (in reverse order)
[2025-05-29 16:03:34] 2025-05-29 12:58:28,437 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 16:03:34] 2025-05-29 12:58:28,437 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 16:03:34] 2025-05-29 12:58:28,441 | INFO     | did not find any defunct processes belonging to 9293
[2025-05-29 16:03:34] 2025-05-29 12:58:28,444 | INFO     | did not find any defunct processes belonging to 9293
[2025-05-29 16:03:34] 2025-05-29 12:58:28,444 | INFO     | ready for new job
[2025-05-29 16:03:34] 2025-05-29 12:58:28,444 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 16:03:34] 2025-05-29 12:58:28,446 | INFO     | **************************************
[2025-05-29 16:03:34] 2025-05-29 12:58:28,446 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 16:03:34] 2025-05-29 12:58:28,447 | INFO     | **************************************
[2025-05-29 16:03:34] 2025-05-29 12:58:28,447 | INFO     | 
[2025-05-29 16:03:34] 2025-05-29 12:58:28,447 | INFO     | pilot is running in a VM
[2025-05-29 16:03:34] 2025-05-29 12:58:28,447 | INFO     | architecture information:
[2025-05-29 16:03:34] 2025-05-29 12:58:28,464 | INFO     | executing command: cat /etc/os-release
[2025-05-29 16:03:34] 2025-05-29 12:58:28,798 | INFO     | cat /etc/os-release:
[2025-05-29 16:03:34] NAME="CentOS Linux"
[2025-05-29 16:03:34] VERSION="7 (Core)"
[2025-05-29 16:03:34] ID="centos"
[2025-05-29 16:03:34] ID_LIKE="rhel fedora"
[2025-05-29 16:03:34] VERSION_ID="7"
[2025-05-29 16:03:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 16:03:34] ANSI_COLOR="0;31"
[2025-05-29 16:03:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 16:03:34] HOME_URL="https://www.centos.org/"
[2025-05-29 16:03:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 16:03:34] 
[2025-05-29 16:03:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 16:03:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 16:03:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 16:03:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 16:03:34] 
[2025-05-29 16:03:34] 2025-05-29 12:58:28,799 | INFO     | **************************************
[2025-05-29 16:03:34] 2025-05-29 12:58:29,302 | INFO     | executing command: df -mP /var/lib/boinc/slots/14
[2025-05-29 16:03:34] 2025-05-29 12:58:29,503 | INFO     | sufficient remaining disk space (496181968896 B)
[2025-05-29 16:03:34] 2025-05-29 12:58:29,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 16:03:34] 2025-05-29 12:58:29,503 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 16:03:34] 2025-05-29 12:58:29,503 | INFO     | update_server=False
[2025-05-29 16:03:34] 2025-05-29 12:58:29,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 16:03:34] 2025-05-29 12:58:29,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 16:03:34] 2025-05-29 12:58:29,744 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 16:03:34] 2025-05-29 12:58:29,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 16:03:34] 2025-05-29 12:58:29,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 16:03:34] 2025-05-29 12:58:29,768 | INFO     | all data control threads have been joined
[2025-05-29 16:03:34] 2025-05-29 12:58:29,768 | INFO     | all job control threads have been joined
[2025-05-29 16:03:34] 2025-05-29 12:58:30,332 | INFO     | all payload control threads have been joined
[2025-05-29 16:03:34] 2025-05-29 12:58:30,333 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 16:03:34] 2025-05-29 12:58:30,333 | INFO     | aborting loop
[2025-05-29 16:03:34] 2025-05-29 12:58:30,510 | INFO     | [job] retrieve thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:30,644 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:30,705 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 16:03:34] 2025-05-29 12:58:30,774 | INFO     | [job] control thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:30,774 | INFO     | [data] control thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:30,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 16:03:34] 2025-05-29 12:58:30,895 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,106 | INFO     | [job] validate thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,220 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,274 | INFO     | [payload] validate_post thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,337 | INFO     | [payload] control thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,339 | INFO     | [job] job monitor thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,513 | INFO     | [data] copytool_out thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,711 | INFO     | [job] queue monitor thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,820 | INFO     | [data] copytool_in thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,884 | INFO     | [payload] failed_post thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:31,886 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:34,809 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 16:03:34] 2025-05-29 12:58:36,169 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140339727402816)>', '<ExcThread(monitor, started 140338987525888)>']
[2025-05-29 16:03:34] 2025-05-29 12:58:36,785 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 16:03:34] 2025-05-29 12:58:36,785 | INFO     | [monitor] control thread has ended
[2025-05-29 16:03:34] 2025-05-29 12:58:41,195 | INFO     | all workflow threads have been joined
[2025-05-29 16:03:34] 2025-05-29 12:58:41,195 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 16:03:34] 2025-05-29 12:58:41,195 | INFO     | traces error code: 0
[2025-05-29 16:03:34] 2025-05-29 12:58:41,195 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 16:03:34] 2025-05-29 12:58:41,503 [wrapper] ==== pilot stdout END ====
[2025-05-29 16:03:34] 2025-05-29 12:58:41,602 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 16:03:34] 2025-05-29 12:58:41,675 [wrapper] pilotpid: 723
[2025-05-29 16:03:34] 2025-05-29 12:58:41,748 [wrapper] Pilot exit status: 0
[2025-05-29 16:03:34] 2025-05-29 12:58:42,269 [wrapper] pandaids: 6666949033
[2025-05-29 16:03:34] 2025-05-29 12:58:43,148 [wrapper] cleanup supervisor_pilot 10828 724
[2025-05-29 16:03:34] 2025-05-29 12:58:43,219 [wrapper] Test setup, not cleaning
[2025-05-29 16:03:34] 2025-05-29 12:58:43,308 [wrapper] apfmon messages muted
[2025-05-29 16:03:34] 2025-05-29 12:58:43,401 [wrapper] ==== wrapper stdout END ====
[2025-05-29 16:03:34] 2025-05-29 12:58:43,486 [wrapper] ==== wrapper stderr END ====
[2025-05-29 16:03:34]  *** Error codes and diagnostics ***
[2025-05-29 16:03:34]     "exeErrorCode": 0,
[2025-05-29 16:03:34]     "exeErrorDiag": "",
[2025-05-29 16:03:34]     "pilotErrorCode": 0,
[2025-05-29 16:03:34]     "pilotErrorDiag": "",
[2025-05-29 16:03:34]  *** Listing of results directory ***
[2025-05-29 16:03:34] total 424836
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc    495897 May 27 13:17 pilot3.tar.gz
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc      5111 May 27 13:34 queuedata.json
[2025-05-29 16:03:34] -rwx------. 1 boinc boinc     37140 May 27 13:35 runpilot2-wrapper.sh
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc       100 May 29 10:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 16:03:34] -rwxr-xr-x. 1 boinc boinc      7986 May 29 10:03 run_atlas
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc       105 May 29 10:03 job.xml
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc      6373 May 29 10:03 init_data.xml
[2025-05-29 16:03:34] -rw-r--r--. 2 boinc boinc 225022774 May 29 10:03 EVNT.44871834._002622.pool.root.1
[2025-05-29 16:03:34] -rw-r--r--. 2 boinc boinc     15093 May 29 10:03 start_atlas.sh
[2025-05-29 16:03:34] drwxrwx--x. 2 boinc boinc        68 May 29 10:03 shared
[2025-05-29 16:03:34] -rw-r--r--. 2 boinc boinc    508881 May 29 10:03 input.tar.gz
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc         0 May 29 10:03 boinc_lockfile
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc      2559 May 29 10:03 pandaJob.out
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc    993147 May 29 10:03 agis_schedconf.cvmfs.json
[2025-05-29 16:03:34] drwx------. 4 boinc boinc      4096 May 29 10:03 pilot3
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc 202326258 May 29 14:55 HITS.44871837._066594.pool.root.1
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc       531 May 29 14:55 boinc_task_state.xml
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc      1020 May 29 14:56 memory_monitor_summary.json
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc   1603667 May 29 14:56 agis_ddmendpoints.agis.ALL.json
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc    411943 May 29 14:56 log.44871837._066594.job.log.tgz.1
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc        95 May 29 14:58 pilot_heartbeat.json
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc      7689 May 29 14:58 heartbeat.json
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc      4417 May 29 14:58 pilotlog.txt
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc   1519590 May 29 14:58 log.44871837._066594.job.log.1
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc       357 May 29 14:58 output.list
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc       620 May 29 14:58 runtime_log
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc   1945600 May 29 14:58 result.tar.gz
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc       657 May 29 14:58 T3BMDmfl7d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPGZKDmc3lw7m.diag
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc      8673 May 29 14:58 runtime_log.err
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc      8192 May 29 16:03 boinc_mmap_file
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc        28 May 29 16:03 wrapper_checkpoint.txt
[2025-05-29 16:03:34] -rw-r--r--. 1 boinc boinc     20474 May 29 16:03 stderr.txt
[2025-05-29 16:03:34] HITS file was successfully produced:
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc 202326258 May 29 14:55 shared/HITS.pool.root.1
[2025-05-29 16:03:34]  *** Contents of shared directory: ***
[2025-05-29 16:03:34] total 419756
[2025-05-29 16:03:34] -rw-r--r--. 2 boinc boinc 225022774 May 29 10:03 ATLAS.root_0
[2025-05-29 16:03:34] -rw-r--r--. 2 boinc boinc     15093 May 29 10:03 start_atlas.sh
[2025-05-29 16:03:34] -rw-r--r--. 2 boinc boinc    508881 May 29 10:03 input.tar.gz
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc 202326258 May 29 14:55 HITS.pool.root.1
[2025-05-29 16:03:34] -rw-------. 1 boinc boinc   1945600 May 29 14:58 result.tar.gz
16:03:36 (29157): run_atlas exited; CPU time 67951.027501
16:03:36 (29157): called boinc_finish(0)

</stderr_txt>
]]>

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