Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
05:04:14 (3643201): wrapper (7.7.26015): starting
05:04:14 (3643201): wrapper: running run_atlas (--nthreads 12)
[2025-05-31 05:04:14] Arguments: --nthreads 12
[2025-05-31 05:04:14] Threads: 12
[2025-05-31 05:04:14] Checking for CVMFS
[2025-05-31 05:04:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-31 05:04:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-31 05:04:14] Running cvmfs_config stat atlas.cern.ch
[2025-05-31 05:04:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-31 05:04:14] 2.12.7.0 3766483 9348 39908 146620 3 56 3918525 4096001 0 130560 1 7149602 99.991 2123367 231 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-05-31 05:04:14] CVMFS is ok
[2025-05-31 05:04:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-31 05:04:14] Small home clusters do not require a local http proxy but it is suggested if
[2025-05-31 05:04:14] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-05-31 05:04:14] Further information can be found at the LHC@home message board.
[2025-05-31 05:04:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-31 05:04:14] Checking for apptainer binary...
[2025-05-31 05:04:14] apptainer is not installed, using version from CVMFS
[2025-05-31 05:04:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-31 05:04:15] ws24
[2025-05-31 05:04:15] apptainer works
[2025-05-31 05:04:15] Set ATHENA_PROC_NUMBER=12
[2025-05-31 05:04:15] Set ATHENA_CORE_NUMBER=12
[2025-05-31 05:04:15] Starting ATLAS job with PandaID=6668229783
[2025-05-31 05:04:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-31 06:32:42]  *** The last 200 lines of the pilot log: ***
[2025-05-31 06:32:42]  replicas=None
[2025-05-31 06:32:42]  scope=mc23_13p6TeV
[2025-05-31 06:32:42]  status=None
[2025-05-31 06:32:42]  status_code=0
[2025-05-31 06:32:42]  storage_token=
[2025-05-31 06:32:42]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6668229783/log.44871837._080541.job.log.tgz.1
[2025-05-31 06:32:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/ee/log.44871837._080541.job.log.tgz.1
[2025-05-31 06:32:42]  workdir=None
[2025-05-31 06:32:42] ]
[2025-05-31 06:32:42] 2025-05-31 04:32:06,847 | INFO     | transferring file log.44871837._080541.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6668229783/log.44871837._080541.job.log.tgz.1 to /var/lib/boinc
[2025-05-31 06:32:42] 2025-05-31 04:32:06,847 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6668229783/log.44871837._080541.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.448718
[2025-05-31 06:32:42] 2025-05-31 04:32:06,867 | INFO     | adding to output.list: log.44871837._080541.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e3/ee/log.44871837._080541.job.log.tg
[2025-05-31 06:32:42] 2025-05-31 04:32:06,868 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-31 06:32:42] 2025-05-31 04:32:06,868 | INFO     | summary of transferred files:
[2025-05-31 06:32:42] 2025-05-31 04:32:06,868 | INFO     |  -- lfn=log.44871837._080541.job.log.tgz.1, status_code=0, status=transferred
[2025-05-31 06:32:42] 2025-05-31 04:32:06,869 | INFO     | stage-out finished correctly
[2025-05-31 06:32:42] 2025-05-31 04:32:06,933 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-31 06:32:42] 2025-05-31 04:32:07,011 | INFO     | job 6668229783 has state=finished
[2025-05-31 06:32:42] 2025-05-31 04:32:07,011 | INFO     | preparing for final server update for job 6668229783 in state='finished'
[2025-05-31 06:32:42] 2025-05-31 04:32:07,810 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-05-31 06:32:42] 2025-05-31 04:32:07,811 | INFO     | this job has now completed (state=finished)
[2025-05-31 06:32:42] 2025-05-31 04:32:07,811 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-31 06:32:42] 2025-05-31 04:32:07,811 | INFO     | log transfer has been attempted: DONE
[2025-05-31 06:32:42] 2025-05-31 04:32:07,811 | INFO     | job 6668229783 has finished - writing final server update
[2025-05-31 06:32:42] 2025-05-31 04:32:07,811 | INFO     | total number of processed events: 400 (read)
[2025-05-31 06:32:42] 2025-05-31 04:32:07,815 | INFO     | executing command: lscpu
[2025-05-31 06:32:42] 2025-05-31 04:32:07,848 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-31 06:32:42] 2025-05-31 04:32:08,332 | INFO     | monitor loop #390: job 0:6668229783 is in state 'finished'
[2025-05-31 06:32:42] 2025-05-31 04:32:08,332 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-31 06:32:42] 2025-05-31 04:32:10,835 | INFO     | monitor loop #391: job 0:6668229783 is in state 'finished'
[2025-05-31 06:32:42] 2025-05-31 04:32:10,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-31 06:32:42] 2025-05-31 04:32:13,338 | INFO     | monitor loop #392: job 0:6668229783 is in state 'finished'
[2025-05-31 06:32:42] 2025-05-31 04:32:13,338 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-31 06:32:42] 2025-05-31 04:32:15,841 | INFO     | monitor loop #393: job 0:6668229783 is in state 'finished'
[2025-05-31 06:32:42] 2025-05-31 04:32:15,841 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-31 06:32:42] 2025-05-31 04:32:18,344 | INFO     | monitor loop #394: job 0:6668229783 is in state 'finished'
[2025-05-31 06:32:42] 2025-05-31 04:32:18,344 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-31 06:32:42] 2025-05-31 04:32:20,846 | INFO     | monitor loop #395: job 0:6668229783 is in state 'finished'
[2025-05-31 06:32:42] 2025-05-31 04:32:20,846 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-31 06:32:42] 2025-05-31 04:32:23,256 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-31 06:32:42] 2025-05-31 04:32:23,256 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6668229783/memory_monitor_summary.json (trf name=prmon)
[2025-05-31 06:32:42] 2025-05-31 04:32:23,256 | INFO     | extracted standard info from prmon json
[2025-05-31 06:32:42] 2025-05-31 04:32:23,257 | INFO     | extracted standard memory fields from prmon json
[2025-05-31 06:32:42] 2025-05-31 04:32:23,257 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-31 06:32:42] 2025-05-31 04:32:23,257 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-31 06:32:42] 2025-05-31 04:32:23,258 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-31 06:32:42] 2025-05-31 04:32:23,259 | INFO     | fitting pss+swap vs Time
[2025-05-31 06:32:42] 2025-05-31 04:32:23,259 | INFO     | sum of square deviations: 152858680.0
[2025-05-31 06:32:42] 2025-05-31 04:32:23,260 | INFO     | sum of deviations: 1728766961.9999998
[2025-05-31 06:32:42] 2025-05-31 04:32:23,260 | INFO     | mean x: 1748663377.0
[2025-05-31 06:32:42] 2025-05-31 04:32:23,260 | INFO     | mean y: 2677961.493670886
[2025-05-31 06:32:42] 2025-05-31 04:32:23,260 | INFO     | -- intersect: -19773964580.604366
[2025-05-31 06:32:42] 2025-05-31 04:32:23,260 | INFO     | intersect: -19773964580.604366
[2025-05-31 06:32:42] 2025-05-31 04:32:23,260 | INFO     | chi2: 0.01708207417584179
[2025-05-31 06:32:42] 2025-05-31 04:32:23,261 | INFO     | -- intersect: -19773964580.604366
[2025-05-31 06:32:42] 2025-05-31 04:32:23,261 | INFO     | current memory leak: 11.31 B/s (using 79 data points, chi2=0.02)
[2025-05-31 06:32:42] 2025-05-31 04:32:23,261 | INFO     | ..............................
[2025-05-31 06:32:42] 2025-05-31 04:32:23,261 | INFO     | . Timing measurements:
[2025-05-31 06:32:42] 2025-05-31 04:32:23,261 | INFO     | . get job = 0 s
[2025-05-31 06:32:42] 2025-05-31 04:32:23,261 | INFO     | . initial setup = 5 s
[2025-05-31 06:32:42] 2025-05-31 04:32:23,261 | INFO     | . payload setup = 6 s
[2025-05-31 06:32:42] 2025-05-31 04:32:23,261 | INFO     | . stage-in = 0 s
[2025-05-31 06:32:42] 2025-05-31 04:32:23,262 | INFO     | . payload execution = 5233 s
[2025-05-31 06:32:42] 2025-05-31 04:32:23,262 | INFO     | . stage-out = 0 s
[2025-05-31 06:32:42] 2025-05-31 04:32:23,262 | INFO     | . log creation = 0 s
[2025-05-31 06:32:42] 2025-05-31 04:32:23,262 | INFO     | ..............................
[2025-05-31 06:32:42] 2025-05-31 04:32:23,347 | INFO     | 
[2025-05-31 06:32:42] 2025-05-31 04:32:23,347 | INFO     | job summary report
[2025-05-31 06:32:42] 2025-05-31 04:32:23,347 | INFO     | --------------------------------------------------
[2025-05-31 06:32:42] 2025-05-31 04:32:23,347 | INFO     | PanDA job id: 6668229783
[2025-05-31 06:32:42] 2025-05-31 04:32:23,347 | INFO     | task id: 44871837
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | errors: (none)
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | pilot state: finished 
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | transexitcode: 0
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | exeerrorcode: 0
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | exeerrordiag: 
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | exitcode: 0
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | exitmsg: OK
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | cpuconsumptiontime: 53663 s
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | nevents: 400
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | neventsw: 0
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | pid: 3653537
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | pgrp: 3653537
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | corecount: 12
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | event service: False
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | sizes: {0: 2405070, 1: 2405269, 4: 2405475, 12: 2405503, 5244: 2431850, 5245: 2440989, 5261: 2441103}
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | --------------------------------------------------
[2025-05-31 06:32:42] 2025-05-31 04:32:23,348 | INFO     | 
[2025-05-31 06:32:42] 2025-05-31 04:32:23,349 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,378 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | job 6668229783 has completed (purged errors)
[2025-05-31 06:32:42] 2025-05-31 04:32:23,379 | INFO     | overall cleanup function is called
[2025-05-31 06:32:42] 2025-05-31 04:32:24,389 | INFO     | --- collectZombieJob: --- 10, [3653537]
[2025-05-31 06:32:42] 2025-05-31 04:32:24,389 | INFO     | zombie collector waiting for pid 3653537
[2025-05-31 06:32:42] 2025-05-31 04:32:24,389 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-31 06:32:42] 2025-05-31 04:32:24,389 | INFO     | collected zombie processes
[2025-05-31 06:32:42] 2025-05-31 04:32:24,389 | INFO     | will attempt to kill all subprocesses of pid=3653537
[2025-05-31 06:32:42] 2025-05-31 04:32:24,513 | INFO     | process IDs to be killed: [3653537] (in reverse order)
[2025-05-31 06:32:42] 2025-05-31 04:32:24,581 | WARNING  | found no corresponding commands to process id(s)
[2025-05-31 06:32:42] 2025-05-31 04:32:24,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-31 06:32:42] 2025-05-31 04:32:24,586 | INFO     | did not find any defunct processes belonging to 3653537
[2025-05-31 06:32:42] 2025-05-31 04:32:24,589 | INFO     | did not find any defunct processes belonging to 3653537
[2025-05-31 06:32:42] 2025-05-31 04:32:24,589 | INFO     | ready for new job
[2025-05-31 06:32:42] 2025-05-31 04:32:24,590 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-31 06:32:42] 2025-05-31 04:32:24,591 | INFO     | **************************************
[2025-05-31 06:32:42] 2025-05-31 04:32:24,591 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-31 06:32:42] 2025-05-31 04:32:24,591 | INFO     | **************************************
[2025-05-31 06:32:42] 2025-05-31 04:32:24,591 | INFO     | 
[2025-05-31 06:32:42] 2025-05-31 04:32:24,592 | INFO     | architecture information:
[2025-05-31 06:32:42] 2025-05-31 04:32:24,592 | INFO     | executing command: cat /etc/os-release
[2025-05-31 06:32:42] 2025-05-31 04:32:24,611 | INFO     | cat /etc/os-release:
[2025-05-31 06:32:42] NAME="CentOS Linux"
[2025-05-31 06:32:42] VERSION="7 (Core)"
[2025-05-31 06:32:42] ID="centos"
[2025-05-31 06:32:42] ID_LIKE="rhel fedora"
[2025-05-31 06:32:42] VERSION_ID="7"
[2025-05-31 06:32:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-31 06:32:42] ANSI_COLOR="0;31"
[2025-05-31 06:32:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-31 06:32:42] HOME_URL="https://www.centos.org/"
[2025-05-31 06:32:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-31 06:32:42] 
[2025-05-31 06:32:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-31 06:32:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-31 06:32:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-31 06:32:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-31 06:32:42] 
[2025-05-31 06:32:42] 2025-05-31 04:32:24,611 | INFO     | **************************************
[2025-05-31 06:32:42] 2025-05-31 04:32:25,114 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-05-31 06:32:42] 2025-05-31 04:32:25,136 | INFO     | sufficient remaining disk space (17647534080 B)
[2025-05-31 06:32:42] 2025-05-31 04:32:25,136 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-31 06:32:42] 2025-05-31 04:32:25,136 | INFO     | current server update state: UPDATING_FINAL
[2025-05-31 06:32:42] 2025-05-31 04:32:25,136 | INFO     | update_server=False
[2025-05-31 06:32:42] 2025-05-31 04:32:25,136 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-31 06:32:42] 2025-05-31 04:32:25,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-31 06:32:42] 2025-05-31 04:32:25,136 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-31 06:32:42] 2025-05-31 04:32:25,137 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-31 06:32:42] 2025-05-31 04:32:25,137 | INFO     | aborting loop
[2025-05-31 06:32:42] 2025-05-31 04:32:25,213 | INFO     | all data control threads have been joined
[2025-05-31 06:32:42] 2025-05-31 04:32:25,480 | INFO     | PID=3646880 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-31 06:32:42] 2025-05-31 04:32:25,480 | INFO     | found 0 job(s) in 20 queues
[2025-05-31 06:32:42] 2025-05-31 04:32:25,480 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-31 06:32:42] 2025-05-31 04:32:25,480 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-31 06:32:42] 2025-05-31 04:32:25,507 | INFO     | all payload control threads have been joined
[2025-05-31 06:32:42] 2025-05-31 04:32:26,141 | INFO     | [job] retrieve thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,142 | INFO     | [job] queue monitor thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,143 | INFO     | [job] job monitor thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,218 | INFO     | [data] control thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,248 | INFO     | [data] copytool_in thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,507 | INFO     | [payload] validate_post thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,510 | INFO     | [payload] control thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,526 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-31 06:32:42] 2025-05-31 04:32:26,620 | INFO     | [payload] failed_post thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,665 | INFO     | [job] create_data_payload thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,707 | INFO     | [job] validate thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,715 | INFO     | [payload] execute_payloads thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:26,796 | INFO     | all job control threads have been joined
[2025-05-31 06:32:42] 2025-05-31 04:32:27,123 | INFO     | [payload] validate_pre thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:27,143 | INFO     | [data] copytool_out thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:27,802 | INFO     | [job] control thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:30,531 | INFO     | [data] queue_monitor thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:35,243 | INFO     | job.realtimelogging is not enabled
[2025-05-31 06:32:42] 2025-05-31 04:32:36,248 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-31 06:32:42] 2025-05-31 04:32:37,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137207717717824)>', '<ExcThread(monitor, started 137206949734144)>']
[2025-05-31 06:32:42] 2025-05-31 04:32:37,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-31 06:32:42] 2025-05-31 04:32:37,540 | INFO     | [monitor] control thread has ended
[2025-05-31 06:32:42] 2025-05-31 04:32:42,460 | INFO     | all workflow threads have been joined
[2025-05-31 06:32:42] 2025-05-31 04:32:42,460 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-31 06:32:42] 2025-05-31 04:32:42,460 | INFO     | traces error code: 0
[2025-05-31 06:32:42] 2025-05-31 04:32:42,461 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-31 06:32:42] 2025-05-31 04:32:42,588 [wrapper] ==== pilot stdout END ====
[2025-05-31 06:32:42] 2025-05-31 04:32:42,594 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-31 06:32:42] 2025-05-31 04:32:42,599 [wrapper] pilotpid: 3646880
[2025-05-31 06:32:42] 2025-05-31 04:32:42,603 [wrapper] Pilot exit status: 0
[2025-05-31 06:32:42] 2025-05-31 04:32:42,617 [wrapper] pandaids: 6668229783
[2025-05-31 06:32:42] 2025-05-31 04:32:42,650 [wrapper] cleanup supervisor_pilot 3668386 3646881
[2025-05-31 06:32:42] 2025-05-31 04:32:42,653 [wrapper] Test setup, not cleaning
[2025-05-31 06:32:42] 2025-05-31 04:32:42,656 [wrapper] apfmon messages muted
[2025-05-31 06:32:42] 2025-05-31 04:32:42,659 [wrapper] ==== wrapper stdout END ====
[2025-05-31 06:32:42] 2025-05-31 04:32:42,664 [wrapper] ==== wrapper stderr END ====
[2025-05-31 06:32:42]  *** Error codes and diagnostics ***
[2025-05-31 06:32:42]     "exeErrorCode": 0,
[2025-05-31 06:32:42]     "exeErrorDiag": "",
[2025-05-31 06:32:42]     "pilotErrorCode": 0,
[2025-05-31 06:32:42]     "pilotErrorDiag": "",
[2025-05-31 06:32:42]  *** Listing of results directory ***
[2025-05-31 06:32:42] total 423408
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc    495897 May 28 09:05 pilot3.tar.gz
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc      5111 May 28 09:13 queuedata.json
[2025-05-31 06:32:42] -rwx------ 1 boinc boinc     37140 May 28 09:14 runpilot2-wrapper.sh
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc       100 May 31 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-31 06:32:42] -rwxr-xr-x 1 boinc boinc      7986 May 31 05:04 run_atlas
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc       105 May 31 05:04 job.xml
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc      9498 May 31 05:04 init_data.xml
[2025-05-31 06:32:42] -rw-r--r-- 2 boinc boinc 225660842 May 31 05:04 EVNT.44871834._003144.pool.root.1
[2025-05-31 06:32:42] -rw-r--r-- 2 boinc boinc     15093 May 31 05:04 start_atlas.sh
[2025-05-31 06:32:42] drwxrwx--x 2 boinc boinc      4096 May 31 05:04 shared
[2025-05-31 06:32:42] -rw-r--r-- 2 boinc boinc    508881 May 31 05:04 input.tar.gz
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc         0 May 31 05:04 boinc_lockfile
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc      2559 May 31 05:04 pandaJob.out
[2025-05-31 06:32:42] -rw------- 1 boinc boinc    987388 May 31 05:04 agis_schedconf.cvmfs.json
[2025-05-31 06:32:42] -rw------- 1 boinc boinc   1603667 May 31 05:04 agis_ddmendpoints.agis.ALL.json
[2025-05-31 06:32:42] drwx------ 4 boinc boinc      4096 May 31 05:04 pilot3
[2025-05-31 06:32:42] -rw------- 1 boinc boinc 202314948 May 31 06:31 HITS.44871837._080541.pool.root.1
[2025-05-31 06:32:42] -rw------- 1 boinc boinc        95 May 31 06:31 pilot_heartbeat.json
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc       529 May 31 06:32 boinc_task_state.xml
[2025-05-31 06:32:42] -rw------- 1 boinc boinc      1045 May 31 06:32 memory_monitor_summary.json
[2025-05-31 06:32:42] -rw------- 1 boinc boinc    372877 May 31 06:32 log.44871837._080541.job.log.tgz.1
[2025-05-31 06:32:42] -rw------- 1 boinc boinc      7696 May 31 06:32 heartbeat.json
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc      8192 May 31 06:32 boinc_mmap_file
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc        27 May 31 06:32 wrapper_checkpoint.txt
[2025-05-31 06:32:42] -rw------- 1 boinc boinc      4751 May 31 06:32 pilotlog.txt
[2025-05-31 06:32:42] -rw------- 1 boinc boinc    500035 May 31 06:32 log.44871837._080541.job.log.1
[2025-05-31 06:32:42] -rw------- 1 boinc boinc       357 May 31 06:32 output.list
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc       620 May 31 06:32 runtime_log
[2025-05-31 06:32:42] -rw------- 1 boinc boinc    890880 May 31 06:32 result.tar.gz
[2025-05-31 06:32:42] -rw------- 1 boinc boinc       643 May 31 06:32 uwkKDmjAQe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmN8SKDmU8IVQo.diag
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc      8686 May 31 06:32 runtime_log.err
[2025-05-31 06:32:42] -rw-r--r-- 1 boinc boinc     22004 May 31 06:32 stderr.txt
[2025-05-31 06:32:42] HITS file was successfully produced:
[2025-05-31 06:32:42] -rw------- 1 boinc boinc 202314948 May 31 06:31 shared/HITS.pool.root.1
[2025-05-31 06:32:42]  *** Contents of shared directory: ***
[2025-05-31 06:32:42] total 419344
[2025-05-31 06:32:42] -rw-r--r-- 2 boinc boinc 225660842 May 31 05:04 ATLAS.root_0
[2025-05-31 06:32:42] -rw-r--r-- 2 boinc boinc     15093 May 31 05:04 start_atlas.sh
[2025-05-31 06:32:42] -rw-r--r-- 2 boinc boinc    508881 May 31 05:04 input.tar.gz
[2025-05-31 06:32:42] -rw------- 1 boinc boinc 202314948 May 31 06:31 HITS.pool.root.1
[2025-05-31 06:32:42] -rw------- 1 boinc boinc    890880 May 31 06:32 result.tar.gz
06:32:44 (3643201): run_atlas exited; CPU time 53625.576934
06:32:44 (3643201): called boinc_finish(0)

</stderr_txt>
]]>

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