Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:08:05 (21111): wrapper (7.7.26015): starting
04:08:05 (21111): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 04:08:05] Arguments: --nthreads 8
[2025-05-29 04:08:05] Threads: 8
[2025-05-29 04:08:05] Checking for CVMFS
[2025-05-29 04:08:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 04:08:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 04:08:06] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 04:08:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 04:08:07] 2.11.2.0 25379 24060 100100 146538 0 210 18423236 25165824 4588 130560 0 13629790 99.867 13464545 2297 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 04:08:07] CVMFS is ok
[2025-05-29 04:08:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 04:08:07] Checking for apptainer binary...
[2025-05-29 04:08:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 04:08:07] Running /usr/bin/apptainer --version
[2025-05-29 04:08:07] apptainer version 1.3.2-1.el7
[2025-05-29 04:08:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 04:08:23] cg-vwn336.simple-grid.lan
[2025-05-29 04:08:23] apptainer works
[2025-05-29 04:08:23] Set ATHENA_PROC_NUMBER=8
[2025-05-29 04:08:23] Set ATHENA_CORE_NUMBER=8
[2025-05-29 04:08:23] Starting ATLAS job with PandaID=6668191070
[2025-05-29 04:08:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 09:45:44]  *** The last 200 lines of the pilot log: ***
[2025-05-29 09:45:44] 2025-05-29 07:34:22,925 | INFO     | extracted standard info from prmon json
[2025-05-29 09:45:44] 2025-05-29 07:34:22,925 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 09:45:44] 2025-05-29 07:34:22,925 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 09:45:44] 2025-05-29 07:34:22,926 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 09:45:44] 2025-05-29 07:34:22,926 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 09:45:44] 2025-05-29 07:34:22,932 | INFO     | fitting pss+swap vs Time
[2025-05-29 09:45:44] 2025-05-29 07:34:22,933 | INFO     | sum of square deviations: 9059954057.0
[2025-05-29 09:45:44] 2025-05-29 07:34:22,936 | INFO     | sum of deviations: 97728034181.00003
[2025-05-29 09:45:44] 2025-05-29 07:34:22,936 | INFO     | mean x: 1748494549.5
[2025-05-29 09:45:44] 2025-05-29 07:34:22,936 | INFO     | mean y: 2460273.3766233767
[2025-05-29 09:45:44] 2025-05-29 07:34:22,937 | INFO     | -- intersect: -18858224231.61857
[2025-05-29 09:45:44] 2025-05-29 07:34:22,937 | INFO     | intersect: -18858224231.61857
[2025-05-29 09:45:44] 2025-05-29 07:34:22,937 | INFO     | chi2: 6.902585151175751
[2025-05-29 09:45:44] 2025-05-29 07:34:22,938 | INFO     | sum of square deviations: 8625843592.0
[2025-05-29 09:45:44] 2025-05-29 07:34:22,941 | INFO     | sum of deviations: 116650018728.99998
[2025-05-29 09:45:44] 2025-05-29 07:34:22,941 | INFO     | mean x: 1748494397.0
[2025-05-29 09:45:44] 2025-05-29 07:34:22,941 | INFO     | mean y: 2466825.8745874586
[2025-05-29 09:45:44] 2025-05-29 07:34:22,941 | INFO     | -- intersect: -23642977469.772633
[2025-05-29 09:45:44] 2025-05-29 07:34:22,941 | INFO     | intersect: -23642977469.772633
[2025-05-29 09:45:44] 2025-05-29 07:34:22,942 | INFO     | chi2: 6.176306356535954
[2025-05-29 09:45:44] 2025-05-29 07:34:22,942 | INFO     | current chi2=6.176306356535954 (change=10.521837525120377 %)
[2025-05-29 09:45:44] 2025-05-29 07:34:22,942 | INFO     | right removable region: 302
[2025-05-29 09:45:44] 2025-05-29 07:34:22,943 | INFO     | sum of square deviations: 8625843592.0
[2025-05-29 09:45:44] 2025-05-29 07:34:22,953 | INFO     | sum of deviations: -9124083967.000004
[2025-05-29 09:45:44] 2025-05-29 07:34:22,953 | INFO     | mean x: 1748494702.0
[2025-05-29 09:45:44] 2025-05-29 07:34:22,953 | INFO     | mean y: 2497782.336633663
[2025-05-29 09:45:44] 2025-05-29 07:34:22,953 | INFO     | -- intersect: 1851987899.6509066
[2025-05-29 09:45:44] 2025-05-29 07:34:22,954 | INFO     | intersect: 1851987899.6509066
[2025-05-29 09:45:44] 2025-05-29 07:34:22,954 | INFO     | chi2: 2.220710855816412
[2025-05-29 09:45:44] 2025-05-29 07:34:22,954 | INFO     | current chi2=2.220710855816412 (change=67.82783830724425 %)
[2025-05-29 09:45:44] 2025-05-29 07:34:22,955 | INFO     | sum of square deviations: 8205826414.5
[2025-05-29 09:45:44] 2025-05-29 07:34:22,958 | INFO     | sum of deviations: -58830129655.000015
[2025-05-29 09:45:44] 2025-05-29 07:34:22,958 | INFO     | mean x: 1748494854.5
[2025-05-29 09:45:44] 2025-05-29 07:34:22,958 | INFO     | mean y: 2515736.154362416
[2025-05-29 09:45:44] 2025-05-29 07:34:22,958 | INFO     | -- intersect: 12538020851.10178
[2025-05-29 09:45:44] 2025-05-29 07:34:22,958 | INFO     | intersect: 12538020851.10178
[2025-05-29 09:45:44] 2025-05-29 07:34:22,959 | INFO     | chi2: 0.940337858113974
[2025-05-29 09:45:44] 2025-05-29 07:34:22,959 | INFO     | current chi2=0.940337858113974 (change=57.65599759864853 %)
[2025-05-29 09:45:44] 2025-05-29 07:34:22,959 | INFO     | sum of square deviations: 7799669962.0
[2025-05-29 09:45:44] 2025-05-29 07:34:22,962 | INFO     | sum of deviations: -65431481212.99999
[2025-05-29 09:45:44] 2025-05-29 07:34:22,962 | INFO     | mean x: 1748495007.0
[2025-05-29 09:45:44] 2025-05-29 07:34:22,962 | INFO     | mean y: 2518202.0648464165
[2025-05-29 09:45:44] 2025-05-29 07:34:22,962 | INFO     | -- intersect: 14670654002.545374
[2025-05-29 09:45:44] 2025-05-29 07:34:22,963 | INFO     | intersect: 14670654002.545374
[2025-05-29 09:45:44] 2025-05-29 07:34:22,963 | INFO     | chi2: 0.9001913774484033
[2025-05-29 09:45:44] 2025-05-29 07:34:22,963 | INFO     | current chi2=0.9001913774484033 (change=4.269367687279132 %)
[2025-05-29 09:45:44] 2025-05-29 07:34:22,963 | INFO     | left removable region: 30
[2025-05-29 09:45:44] 2025-05-29 07:34:22,964 | INFO     | sum of square deviations: 6239923508.0
[2025-05-29 09:45:44] 2025-05-29 07:34:22,966 | INFO     | sum of deviations: -28817523071.0
[2025-05-29 09:45:44] 2025-05-29 07:34:22,967 | INFO     | mean x: 1748495281.5
[2025-05-29 09:45:44] 2025-05-29 07:34:22,967 | INFO     | mean y: 2519451.279411765
[2025-05-29 09:45:44] 2025-05-29 07:34:22,967 | INFO     | -- intersect: 8077506756.74253
[2025-05-29 09:45:44] 2025-05-29 07:34:22,967 | INFO     | intersect: 8077506756.74253
[2025-05-29 09:45:44] 2025-05-29 07:34:22,967 | INFO     | chi2: 0.09730882362955999
[2025-05-29 09:45:44] 2025-05-29 07:34:22,967 | INFO     | -- intersect: 8077506756.74253
[2025-05-29 09:45:44] 2025-05-29 07:34:22,968 | INFO     | current memory leak: -4.62 B/s (using 272 data points, chi2=0.10)
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | ..............................
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | . Timing measurements:
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | . get job = 0 s
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | . initial setup = 4 s
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | . payload setup = 158 s
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | . stage-in = 0 s
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | . payload execution = 18922 s
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | . stage-out = 4 s
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | . log creation = 1 s
[2025-05-29 09:45:44] 2025-05-29 07:34:22,969 | INFO     | ..............................
[2025-05-29 09:45:44] 2025-05-29 07:34:23,105 | INFO     | 
[2025-05-29 09:45:44] 2025-05-29 07:34:23,105 | INFO     | job summary report
[2025-05-29 09:45:44] 2025-05-29 07:34:23,105 | INFO     | --------------------------------------------------
[2025-05-29 09:45:44] 2025-05-29 07:34:23,105 | INFO     | PanDA job id: 6668191070
[2025-05-29 09:45:44] 2025-05-29 07:34:23,105 | INFO     | task id: 44871837
[2025-05-29 09:45:44] 2025-05-29 07:34:23,105 | INFO     | errors: (none)
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | pilot state: finished 
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | transexitcode: 0
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | exeerrorcode: 0
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | exeerrordiag: 
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | exitcode: 0
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | exitmsg: OK
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | cpuconsumptiontime: 69086 s
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | nevents: 400
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | neventsw: 0
[2025-05-29 09:45:44] 2025-05-29 07:34:23,106 | INFO     | pid: 4461
[2025-05-29 09:45:44] 2025-05-29 07:34:23,107 | INFO     | pgrp: 4461
[2025-05-29 09:45:44] 2025-05-29 07:34:23,107 | INFO     | corecount: 8
[2025-05-29 09:45:44] 2025-05-29 07:34:23,107 | INFO     | event service: False
[2025-05-29 09:45:44] 2025-05-29 07:34:23,107 | INFO     | sizes: {0: 2405063, 1: 2405262, 2: 2405262, 12: 2405290, 23: 2405318, 34: 2405346, 45: 2405502, 55: 2405530, 66: 2405558, 77: 2405586, 87: 2405642, 89: 2406156, 98
[2025-05-29 09:45:44] 2025-05-29 07:34:23,107 | INFO     | --------------------------------------------------
[2025-05-29 09:45:44] 2025-05-29 07:34:23,107 | INFO     | 
[2025-05-29 09:45:44] 2025-05-29 07:34:23,107 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-05-29 09:45:44] 2025-05-29 07:34:23,515 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,516 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,516 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,516 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,516 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,516 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,516 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,517 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 09:45:44] 2025-05-29 07:34:23,518 | INFO     | job 6668191070 has completed (purged errors)
[2025-05-29 09:45:44] 2025-05-29 07:34:23,518 | INFO     | overall cleanup function is called
[2025-05-29 09:45:44] 2025-05-29 07:34:24,528 | INFO     | --- collectZombieJob: --- 10, [4461]
[2025-05-29 09:45:44] 2025-05-29 07:34:24,528 | INFO     | zombie collector waiting for pid 4461
[2025-05-29 09:45:44] 2025-05-29 07:34:24,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 09:45:44] 2025-05-29 07:34:24,528 | INFO     | collected zombie processes
[2025-05-29 09:45:44] 2025-05-29 07:34:24,528 | INFO     | will attempt to kill all subprocesses of pid=4461
[2025-05-29 09:45:44] 2025-05-29 07:34:24,642 | INFO     | process IDs to be killed: [4461] (in reverse order)
[2025-05-29 09:45:44] 2025-05-29 07:34:25,123 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 09:45:44] 2025-05-29 07:34:25,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 09:45:44] 2025-05-29 07:34:25,127 | INFO     | did not find any defunct processes belonging to 4461
[2025-05-29 09:45:44] 2025-05-29 07:34:25,130 | INFO     | did not find any defunct processes belonging to 4461
[2025-05-29 09:45:44] 2025-05-29 07:34:25,130 | INFO     | ready for new job
[2025-05-29 09:45:44] 2025-05-29 07:34:25,131 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 09:45:44] 2025-05-29 07:34:25,133 | INFO     | **************************************
[2025-05-29 09:45:44] 2025-05-29 07:34:25,133 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 09:45:44] 2025-05-29 07:34:25,133 | INFO     | **************************************
[2025-05-29 09:45:44] 2025-05-29 07:34:25,133 | INFO     | 
[2025-05-29 09:45:44] 2025-05-29 07:34:25,134 | INFO     | pilot is running in a VM
[2025-05-29 09:45:44] 2025-05-29 07:34:25,134 | INFO     | architecture information:
[2025-05-29 09:45:44] 2025-05-29 07:34:25,144 | INFO     | executing command: cat /etc/os-release
[2025-05-29 09:45:44] 2025-05-29 07:34:25,301 | INFO     | cat /etc/os-release:
[2025-05-29 09:45:44] NAME="CentOS Linux"
[2025-05-29 09:45:44] VERSION="7 (Core)"
[2025-05-29 09:45:44] ID="centos"
[2025-05-29 09:45:44] ID_LIKE="rhel fedora"
[2025-05-29 09:45:44] VERSION_ID="7"
[2025-05-29 09:45:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 09:45:44] ANSI_COLOR="0;31"
[2025-05-29 09:45:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 09:45:44] HOME_URL="https://www.centos.org/"
[2025-05-29 09:45:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 09:45:44] 
[2025-05-29 09:45:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 09:45:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 09:45:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 09:45:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 09:45:44] 
[2025-05-29 09:45:44] 2025-05-29 07:34:25,302 | INFO     | **************************************
[2025-05-29 09:45:44] 2025-05-29 07:34:25,806 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-05-29 09:45:44] 2025-05-29 07:34:26,089 | INFO     | sufficient remaining disk space (496531144704 B)
[2025-05-29 09:45:44] 2025-05-29 07:34:26,089 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 09:45:44] 2025-05-29 07:34:26,089 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 09:45:44] 2025-05-29 07:34:26,089 | INFO     | update_server=False
[2025-05-29 09:45:44] 2025-05-29 07:34:26,089 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 09:45:44] 2025-05-29 07:34:26,091 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 09:45:44] 2025-05-29 07:34:26,097 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-29 09:45:44] 2025-05-29 07:34:26,097 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 09:45:44] 2025-05-29 07:34:26,097 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 09:45:44] 2025-05-29 07:34:26,098 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 09:45:44] 2025-05-29 07:34:26,303 | INFO     | all payload control threads have been joined
[2025-05-29 09:45:44] 2025-05-29 07:34:26,705 | INFO     | all job control threads have been joined
[2025-05-29 09:45:44] 2025-05-29 07:34:26,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 09:45:44] 2025-05-29 07:34:26,846 | INFO     | aborting loop
[2025-05-29 09:45:44] 2025-05-29 07:34:26,858 | INFO     | all data control threads have been joined
[2025-05-29 09:45:44] 2025-05-29 07:34:27,096 | INFO     | [job] retrieve thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:27,130 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:27,308 | INFO     | [payload] control thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:27,325 | INFO     | [payload] failed_post thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:27,420 | INFO     | [job] validate thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:27,559 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 09:45:44] 2025-05-29 07:34:27,710 | INFO     | [job] control thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:27,852 | INFO     | [job] job monitor thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:27,864 | INFO     | [data] control thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:27,870 | INFO     | [data] copytool_in thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:28,060 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:28,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 09:45:44] 2025-05-29 07:34:28,227 | INFO     | [payload] validate_post thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:28,264 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:28,267 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:29,126 | INFO     | [job] queue monitor thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:29,566 | INFO     | [data] copytool_out thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:30,100 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 09:45:44] 2025-05-29 07:34:31,372 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140633482618688)>', '<ExcThread(monitor, started 140633024997120)>']
[2025-05-29 09:45:44] 2025-05-29 07:34:32,133 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 09:45:44] 2025-05-29 07:34:32,133 | INFO     | [monitor] control thread has ended
[2025-05-29 09:45:44] 2025-05-29 07:34:36,398 | INFO     | all workflow threads have been joined
[2025-05-29 09:45:44] 2025-05-29 07:34:36,398 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 09:45:44] 2025-05-29 07:34:36,398 | INFO     | traces error code: 0
[2025-05-29 09:45:44] 2025-05-29 07:34:36,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 09:45:44] 2025-05-29 07:34:36,742 [wrapper] ==== pilot stdout END ====
[2025-05-29 09:45:44] 2025-05-29 07:34:36,788 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 09:45:44] 2025-05-29 07:34:36,905 [wrapper] pilotpid: 30215
[2025-05-29 09:45:44] 2025-05-29 07:34:37,002 [wrapper] Pilot exit status: 0
[2025-05-29 09:45:44] 2025-05-29 07:34:37,465 [wrapper] pandaids: 6668191070
[2025-05-29 09:45:44] 2025-05-29 07:34:38,250 [wrapper] cleanup supervisor_pilot 29453 30216
[2025-05-29 09:45:44] 2025-05-29 07:34:38,254 [wrapper] Test setup, not cleaning
[2025-05-29 09:45:44] 2025-05-29 07:34:38,257 [wrapper] apfmon messages muted
[2025-05-29 09:45:44] 2025-05-29 07:34:38,260 [wrapper] ==== wrapper stdout END ====
[2025-05-29 09:45:44] 2025-05-29 07:34:38,265 [wrapper] ==== wrapper stderr END ====
[2025-05-29 09:45:44]  *** Error codes and diagnostics ***
[2025-05-29 09:45:44]     "exeErrorCode": 0,
[2025-05-29 09:45:44]     "exeErrorDiag": "",
[2025-05-29 09:45:44]     "pilotErrorCode": 0,
[2025-05-29 09:45:44]     "pilotErrorDiag": "",
[2025-05-29 09:45:44]  *** Listing of results directory ***
[2025-05-29 09:45:44] total 422832
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc    495897 May 28 07:33 pilot3.tar.gz
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc      5111 May 28 07:56 queuedata.json
[2025-05-29 09:45:44] -rwx------. 1 boinc boinc     37140 May 28 07:58 runpilot2-wrapper.sh
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc       100 May 29 04:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 09:45:44] -rwxr-xr-x. 1 boinc boinc      7986 May 29 04:08 run_atlas
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc       105 May 29 04:08 job.xml
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc      6371 May 29 04:08 init_data.xml
[2025-05-29 09:45:44] -rw-r--r--. 2 boinc boinc 224499713 May 29 04:08 EVNT.44871834._003109.pool.root.1
[2025-05-29 09:45:44] -rw-r--r--. 2 boinc boinc     15093 May 29 04:08 start_atlas.sh
[2025-05-29 09:45:44] drwxrwx--x. 2 boinc boinc        68 May 29 04:08 shared
[2025-05-29 09:45:44] -rw-r--r--. 2 boinc boinc    508883 May 29 04:08 input.tar.gz
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc         0 May 29 04:08 boinc_lockfile
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc      2559 May 29 04:08 pandaJob.out
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc    993415 May 29 04:11 agis_schedconf.cvmfs.json
[2025-05-29 09:45:44] drwx------. 4 boinc boinc      4096 May 29 04:11 pilot3
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc 200506033 May 29 09:31 HITS.44871837._079632.pool.root.1
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc       531 May 29 09:31 boinc_task_state.xml
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc      1019 May 29 09:32 memory_monitor_summary.json
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc   1603667 May 29 09:32 agis_ddmendpoints.agis.ALL.json
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc    435093 May 29 09:32 log.44871837._079632.job.log.tgz.1
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc        95 May 29 09:34 pilot_heartbeat.json
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc      7690 May 29 09:34 heartbeat.json
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc      4539 May 29 09:34 pilotlog.txt
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc   1638717 May 29 09:34 log.44871837._079632.job.log.1
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc       357 May 29 09:34 output.list
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc       620 May 29 09:34 runtime_log
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc   2088960 May 29 09:34 result.tar.gz
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc      8659 May 29 09:34 runtime_log.err
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc       657 May 29 09:34 detMDm9yOe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmP0SKDmlXZsSo.diag
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc      8192 May 29 09:45 boinc_mmap_file
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc        28 May 29 09:45 wrapper_checkpoint.txt
[2025-05-29 09:45:44] -rw-r--r--. 1 boinc boinc     20504 May 29 09:45 stderr.txt
[2025-05-29 09:45:44] HITS file was successfully produced:
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc 200506033 May 29 09:31 shared/HITS.pool.root.1
[2025-05-29 09:45:44]  *** Contents of shared directory: ***
[2025-05-29 09:45:44] total 417604
[2025-05-29 09:45:44] -rw-r--r--. 2 boinc boinc 224499713 May 29 04:08 ATLAS.root_0
[2025-05-29 09:45:44] -rw-r--r--. 2 boinc boinc     15093 May 29 04:08 start_atlas.sh
[2025-05-29 09:45:44] -rw-r--r--. 2 boinc boinc    508883 May 29 04:08 input.tar.gz
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc 200506033 May 29 09:31 HITS.pool.root.1
[2025-05-29 09:45:44] -rw-------. 1 boinc boinc   2088960 May 29 09:34 result.tar.gz
09:45:46 (21111): run_atlas exited; CPU time 69353.229836
09:45:46 (21111): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN