Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:56:40 (215937): wrapper (7.7.26015): starting
06:56:40 (215937): wrapper: running run_atlas (--nthreads 12)
[2025-05-28 06:56:40] Arguments: --nthreads 12
[2025-05-28 06:56:40] Threads: 12
[2025-05-28 06:56:40] Checking for CVMFS
[2025-05-28 06:56:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 06:56:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 06:56:40] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 06:56:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 06:56:40] 2.11.5.0 2647 40902 222460 146520 1 242 24168744 45568001 14790 130560 0 397977880 99.780 266344970 26247 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-05-28 06:56:40] CVMFS is ok
[2025-05-28 06:56:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-28 06:56:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-28 06:56:40] Further information can be found at the LHC@home message board.
[2025-05-28 06:56:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 06:56:40] Checking for apptainer binary...
[2025-05-28 06:56:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 06:56:40] Running /usr/bin/apptainer --version
[2025-05-28 06:56:40] apptainer version 1.4.0-1.el9
[2025-05-28 06:56:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 06:56:40] wns0031.triumf.lcg
[2025-05-28 06:56:40] apptainer works
[2025-05-28 06:56:40] Set ATHENA_PROC_NUMBER=12
[2025-05-28 06:56:40] Set ATHENA_CORE_NUMBER=12
[2025-05-28 06:56:40] Starting ATLAS job with PandaID=6668327138
[2025-05-28 06:56:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 06:59:49]  *** The last 200 lines of the pilot log: ***
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 06:59:49] 2025-05-28 13:59:36,676 | WARNING  | found no stored workdir sizes
[2025-05-28 06:59:49] 2025-05-28 13:59:36,676 | INFO     | will not add max space = 0 B to job metrics
[2025-05-28 06:59:49] 2025-05-28 13:59:36,676 | WARNING  | wrong length of table data, x=[1748440638.0], y=[2008.0] (must be same and length>=4)
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | ..............................
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . Timing measurements:
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . get job = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . initial setup = 2 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . payload setup = 5 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . stage-in = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . payload execution = 19 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . stage-out = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . log creation = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | ..............................
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6668327138/pilotlog.txt
[2025-05-28 06:59:49] 2025-05-28 13:59:36,689 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-05-28 06:59:49] - Log from pilotlog.txt -
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | INFO     | extracted standard info from prmon json
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 06:59:49] 2025-05-28 13:59:36,676 | WARNING  | found no stored workdir sizes
[2025-05-28 06:59:49] 2025-05-28 13:59:36,676 | INFO     | will not add max space = 0 B to job metrics
[2025-05-28 06:59:49] 2025-05-28 13:59:36,676 | WARNING  | wrong length of table data, x=[1748440638.0], y=[2008.0] (must be same and length>=4)
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | ..............................
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . Timing measurements:
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . get job = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . initial setup = 2 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . payload setup = 5 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . stage-in = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . payload execution = 19 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . stage-out = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . log creation = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | ..............................
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6668327138/pilotlog.txt
[2025-05-28 06:59:49] 2025-05-28 13:59:36,689 | WARNING  | 
[2025-05-28 06:59:49] [begin log extracts]
[2025-05-28 06:59:49] - Log from pilotlog.txt -
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | INFO     | extracted standard info from prmon json
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 06:59:49] 2025-05-28 13:59:36,675 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 06:59:49] 2025-05-28 13:59:36,676 | WARNING  | found no stored workdir sizes
[2025-05-28 06:59:49] 2025-05-28 13:59:36,676 | INFO     | will not add max space = 0 B to job metrics
[2025-05-28 06:59:49] 2025-05-28 13:59:36,676 | WARNING  | wrong length of table data, x=[1748440638.0], y=[2008.0] (must be same and length>=4)
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | ..............................
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . Timing measurements:
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . get job = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . initial setup = 2 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . payload setup = 5 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . stage-in = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . payload execution = 19 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . stage-out = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | . log creation = 0 s
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | ..............................
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-28 06:59:49] 2025-05-28 13:59:36,677 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6668327138/pilotlog.txt
[2025-05-28 06:59:49] [end log extracts]
[2025-05-28 06:59:49] 2025-05-28 13:59:36,689 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-05-28 06:59:49] 2025-05-28 13:59:36,690 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | 
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | job summary report
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | --------------------------------------------------
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | PanDA job id: 6668327138
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | task id: 44871837
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-05-28 06:57:26,471 CRITICAL Transform executor raised TransformValidationExceptio
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | pilot state: failed 
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | transexitcode: 65
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | exeerrorcode: 65
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | exitcode: 65
[2025-05-28 06:59:49] 2025-05-28 13:59:37,246 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | cpuconsumptiontime: 15 s
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | nevents: 0
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | neventsw: 0
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | pid: 225802
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | pgrp: 225802
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | corecount: 12
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | event service: False
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | sizes: {0: 2405225, 1: 2405225, 4: 2405459, 11: 2405487, 28: 2428756, 29: 2432991, 31: 2433147, 151: 2433289}
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | --------------------------------------------------
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | 
[2025-05-28 06:59:49] 2025-05-28 13:59:37,247 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,261 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,262 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,262 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,262 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,262 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,262 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 06:59:49] 2025-05-28 13:59:37,262 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,262 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 06:59:49] 2025-05-28 13:59:37,262 | INFO     | job 6668327138 has completed (purged errors)
[2025-05-28 06:59:49] 2025-05-28 13:59:37,262 | INFO     | overall cleanup function is called
[2025-05-28 06:59:49] 2025-05-28 13:59:38,268 | INFO     | --- collectZombieJob: --- 10, [225802]
[2025-05-28 06:59:49] 2025-05-28 13:59:38,268 | INFO     | zombie collector waiting for pid 225802
[2025-05-28 06:59:49] 2025-05-28 13:59:38,268 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 06:59:49] 2025-05-28 13:59:38,269 | INFO     | collected zombie processes
[2025-05-28 06:59:49] 2025-05-28 13:59:38,269 | INFO     | will attempt to kill all subprocesses of pid=225802
[2025-05-28 06:59:49] 2025-05-28 13:59:38,420 | INFO     | process IDs to be killed: [225802] (in reverse order)
[2025-05-28 06:59:49] 2025-05-28 13:59:38,478 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 06:59:49] 2025-05-28 13:59:38,479 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 06:59:49] 2025-05-28 13:59:38,485 | INFO     | did not find any defunct processes belonging to 225802
[2025-05-28 06:59:49] 2025-05-28 13:59:38,491 | INFO     | did not find any defunct processes belonging to 225802
[2025-05-28 06:59:49] 2025-05-28 13:59:38,491 | INFO     | ready for new job
[2025-05-28 06:59:49] 2025-05-28 13:59:38,491 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 06:59:49] 2025-05-28 13:59:38,492 | INFO     | **************************************
[2025-05-28 06:59:49] 2025-05-28 13:59:38,493 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 06:59:49] 2025-05-28 13:59:38,493 | INFO     | **************************************
[2025-05-28 06:59:49] 2025-05-28 13:59:38,493 | INFO     | 
[2025-05-28 06:59:49] 2025-05-28 13:59:38,495 | INFO     | architecture information:
[2025-05-28 06:59:49] 2025-05-28 13:59:38,495 | INFO     | executing command: cat /etc/os-release
[2025-05-28 06:59:49] 2025-05-28 13:59:38,504 | INFO     | cat /etc/os-release:
[2025-05-28 06:59:49] NAME="CentOS Linux"
[2025-05-28 06:59:49] VERSION="7 (Core)"
[2025-05-28 06:59:49] ID="centos"
[2025-05-28 06:59:49] ID_LIKE="rhel fedora"
[2025-05-28 06:59:49] VERSION_ID="7"
[2025-05-28 06:59:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 06:59:49] ANSI_COLOR="0;31"
[2025-05-28 06:59:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 06:59:49] HOME_URL="https://www.centos.org/"
[2025-05-28 06:59:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 06:59:49] 
[2025-05-28 06:59:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 06:59:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 06:59:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 06:59:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 06:59:49] 
[2025-05-28 06:59:49] 2025-05-28 13:59:38,504 | INFO     | **************************************
[2025-05-28 06:59:49] 2025-05-28 13:59:39,008 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-05-28 06:59:49] 2025-05-28 13:59:39,019 | INFO     | sufficient remaining disk space (1809696423936 B)
[2025-05-28 06:59:49] 2025-05-28 13:59:39,019 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 06:59:49] 2025-05-28 13:59:39,020 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 06:59:49] 2025-05-28 13:59:39,020 | INFO     | update_server=False
[2025-05-28 06:59:49] 2025-05-28 13:59:39,020 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 06:59:49] 2025-05-28 13:59:39,020 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 06:59:49] 2025-05-28 13:59:39,020 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 06:59:49] 2025-05-28 13:59:39,020 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 06:59:49] 2025-05-28 13:59:39,020 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 06:59:49] 2025-05-28 13:59:39,277 | INFO     | all payload control threads have been joined
[2025-05-28 06:59:49] 2025-05-28 13:59:39,288 | INFO     | all data control threads have been joined
[2025-05-28 06:59:49] 2025-05-28 13:59:39,649 | INFO     | all job control threads have been joined
[2025-05-28 06:59:49] 2025-05-28 13:59:39,763 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 06:59:49] 2025-05-28 13:59:39,763 | INFO     | aborting loop
[2025-05-28 06:59:49] 2025-05-28 13:59:40,025 | INFO     | [job] retrieve thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,059 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,117 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,283 | INFO     | [payload] control thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,294 | INFO     | [data] control thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,341 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 06:59:49] 2025-05-28 13:59:40,392 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 06:59:49] 2025-05-28 13:59:40,534 | INFO     | [payload] failed_post thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,562 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,655 | INFO     | [job] control thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,722 | INFO     | [data] copytool_in thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,768 | INFO     | [job] job monitor thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:40,922 | INFO     | [payload] validate_post thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:41,234 | INFO     | [job] validate thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:41,389 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:41,769 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 06:59:49] 2025-05-28 13:59:42,349 | INFO     | [data] copytool_out thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:42,775 | INFO     | [job] queue monitor thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:44,399 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 06:59:49] 2025-05-28 13:59:44,422 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591386531648)>', '<ExcThread(monitor, started 140590712874752)>']
[2025-05-28 06:59:49] 2025-05-28 13:59:45,051 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 06:59:49] 2025-05-28 13:59:45,051 | INFO     | [monitor] control thread has ended
[2025-05-28 06:59:49] 2025-05-28 13:59:49,448 | INFO     | all workflow threads have been joined
[2025-05-28 06:59:49] 2025-05-28 13:59:49,448 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 06:59:49] 2025-05-28 13:59:49,448 | INFO     | traces error code: 0
[2025-05-28 06:59:49] 2025-05-28 13:59:49,448 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 06:59:49] 2025-05-28 13:59:49,562 [wrapper] ==== pilot stdout END ====
[2025-05-28 06:59:49] 2025-05-28 13:59:49,564 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 06:59:49] 2025-05-28 13:59:49,566 [wrapper] pilotpid: 219496
[2025-05-28 06:59:49] 2025-05-28 13:59:49,567 [wrapper] Pilot exit status: 0
[2025-05-28 06:59:49] 2025-05-28 13:59:49,574 [wrapper] pandaids: 6668327138
[2025-05-28 06:59:49] 2025-05-28 13:59:49,610 [wrapper] cleanup supervisor_pilot  219502 219497
[2025-05-28 06:59:49] 2025-05-28 13:59:49,613 [wrapper] Test setup, not cleaning
[2025-05-28 06:59:49] 2025-05-28 13:59:49,614 [wrapper] apfmon messages muted
[2025-05-28 06:59:49] 2025-05-28 13:59:49,616 [wrapper] ==== wrapper stdout END ====
[2025-05-28 06:59:49] 2025-05-28 13:59:49,619 [wrapper] ==== wrapper stderr END ====
[2025-05-28 06:59:49]  *** Error codes and diagnostics ***
[2025-05-28 06:59:49]     "exeErrorCode": 65,
[2025-05-28 06:59:49]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-05-28 06:59:49]     "pilotErrorCode": 1305,
[2025-05-28 06:59:49]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-05-28 06:59:49]  *** Listing of results directory ***
[2025-05-28 06:59:49] total 221388
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc      5111 May 28 03:53 queuedata.json
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc    495897 May 28 03:54 pilot3.tar.gz
[2025-05-28 06:59:49] -rwx------. 1 boinc boinc     37140 May 28 03:54 runpilot2-wrapper.sh
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc       100 May 28 06:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 06:59:49] -rwxr-xr-x. 1 boinc boinc      7986 May 28 06:56 run_atlas
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc       105 May 28 06:56 job.xml
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc      6601 May 28 06:56 init_data.xml
[2025-05-28 06:59:49] -rw-r--r--. 2 boinc boinc 222666443 May 28 06:56 EVNT.44871834._003249.pool.root.1
[2025-05-28 06:59:49] -rw-r--r--. 2 boinc boinc     15093 May 28 06:56 start_atlas.sh
[2025-05-28 06:59:49] drwxrwx--x. 2 boinc boinc      4096 May 28 06:56 shared
[2025-05-28 06:59:49] -rw-r--r--. 2 boinc boinc    508875 May 28 06:56 input.tar.gz
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc         0 May 28 06:56 boinc_lockfile
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc      2556 May 28 06:56 pandaJob.out
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc    991925 May 28 06:56 agis_schedconf.cvmfs.json
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc   1603667 May 28 06:56 agis_ddmendpoints.agis.ALL.json
[2025-05-28 06:59:49] drwx------. 4 boinc boinc      4096 May 28 06:56 pilot3
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc       522 May 28 06:57 boinc_task_state.xml
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc       955 May 28 06:57 memory_monitor_summary.json
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc     20587 May 28 06:57 log.44871837._083226.job.log.tgz.1
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc        95 May 28 06:58 pilot_heartbeat.json
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc      8315 May 28 06:59 heartbeat.json
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc        22 May 28 06:59 wrapper_checkpoint.txt
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc      8192 May 28 06:59 boinc_mmap_file
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc      4475 May 28 06:59 pilotlog.txt
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc     73908 May 28 06:59 log.44871837._083226.job.log.1
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc       188 May 28 06:59 output.list
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc       620 May 28 06:59 runtime_log
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc    112640 May 28 06:59 result.tar.gz
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc       645 May 28 06:59 y1GMDm5bTe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnybKDmn3lvym.diag
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc      8484 May 28 06:59 runtime_log.err
[2025-05-28 06:59:49] -rw-r--r--. 1 boinc boinc     21482 May 28 06:59 stderr.txt
[2025-05-28 06:59:49] No HITS result produced
[2025-05-28 06:59:49]  *** Contents of shared directory: ***
[2025-05-28 06:59:49] total 218080
[2025-05-28 06:59:49] -rw-r--r--. 2 boinc boinc 222666443 May 28 06:56 ATLAS.root_0
[2025-05-28 06:59:49] -rw-r--r--. 2 boinc boinc     15093 May 28 06:56 start_atlas.sh
[2025-05-28 06:59:49] -rw-r--r--. 2 boinc boinc    508875 May 28 06:56 input.tar.gz
[2025-05-28 06:59:49] -rw-------. 1 boinc boinc    112640 May 28 06:59 result.tar.gz
06:59:50 (215937): run_atlas exited; CPU time 19.819373
06:59:50 (215937): called boinc_finish(0)

</stderr_txt>
]]>

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