Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:23:11 (3889): wrapper (7.7.26015): starting
01:23:11 (3889): wrapper: running run_atlas (--nthreads 8)
[2025-05-29 01:23:11] Arguments: --nthreads 8
[2025-05-29 01:23:11] Threads: 8
[2025-05-29 01:23:11] Checking for CVMFS
[2025-05-29 01:23:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-29 01:23:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-29 01:23:12] Running cvmfs_config stat atlas.cern.ch
[2025-05-29 01:23:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-29 01:23:14] 2.11.2.0 18345 23878 96260 146536 0 59 18647504 25165824 4633 130560 0 13161280 99.833 14546400 1705 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-29 01:23:14] CVMFS is ok
[2025-05-29 01:23:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 01:23:14] Checking for apptainer binary...
[2025-05-29 01:23:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-29 01:23:14] Running /usr/bin/apptainer --version
[2025-05-29 01:23:14] apptainer version 1.3.2-1.el7
[2025-05-29 01:23:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 01:23:25] cg-vwn239.simple-grid.lan
[2025-05-29 01:23:25] apptainer works
[2025-05-29 01:23:25] Set ATHENA_PROC_NUMBER=8
[2025-05-29 01:23:25] Set ATHENA_CORE_NUMBER=8
[2025-05-29 01:23:25] Starting ATLAS job with PandaID=6668210796
[2025-05-29 01:23:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 07:00:58]  *** The last 200 lines of the pilot log: ***
[2025-05-29 07:00:58] 2025-05-29 04:44:06,575 | INFO     | extracted standard info from prmon json
[2025-05-29 07:00:58] 2025-05-29 04:44:06,575 | INFO     | extracted standard memory fields from prmon json
[2025-05-29 07:00:58] 2025-05-29 04:44:06,576 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-29 07:00:58] 2025-05-29 04:44:06,576 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-29 07:00:58] 2025-05-29 04:44:06,576 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-29 07:00:58] 2025-05-29 04:44:06,582 | INFO     | fitting pss+swap vs Time
[2025-05-29 07:00:58] 2025-05-29 04:44:06,583 | INFO     | sum of square deviations: 8625843592.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,586 | INFO     | sum of deviations: 93075319632.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,586 | INFO     | mean x: 1748484475.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,586 | INFO     | mean y: 2473060.468646865
[2025-05-29 07:00:58] 2025-05-29 04:44:06,586 | INFO     | -- intersect: -18864174548.716835
[2025-05-29 07:00:58] 2025-05-29 04:44:06,586 | INFO     | intersect: -18864174548.716835
[2025-05-29 07:00:58] 2025-05-29 04:44:06,587 | INFO     | chi2: 7.427696214235713
[2025-05-29 07:00:58] 2025-05-29 04:44:06,588 | INFO     | sum of square deviations: 8205826414.5
[2025-05-29 07:00:58] 2025-05-29 04:44:06,590 | INFO     | sum of deviations: 111653486494.50002
[2025-05-29 07:00:58] 2025-05-29 04:44:06,591 | INFO     | mean x: 1748484322.5
[2025-05-29 07:00:58] 2025-05-29 04:44:06,591 | INFO     | mean y: 2479707.2718120804
[2025-05-29 07:00:58] 2025-05-29 04:44:06,591 | INFO     | -- intersect: -23788465997.2498
[2025-05-29 07:00:58] 2025-05-29 04:44:06,591 | INFO     | intersect: -23788465997.2498
[2025-05-29 07:00:58] 2025-05-29 04:44:06,592 | INFO     | chi2: 6.705602732472939
[2025-05-29 07:00:58] 2025-05-29 04:44:06,592 | INFO     | current chi2=6.705602732472939 (change=9.72163455445081 %)
[2025-05-29 07:00:58] 2025-05-29 04:44:06,592 | INFO     | right removable region: 297
[2025-05-29 07:00:58] 2025-05-29 04:44:06,592 | INFO     | sum of square deviations: 8205826414.5
[2025-05-29 07:00:58] 2025-05-29 04:44:06,595 | INFO     | sum of deviations: -13789646610.5
[2025-05-29 07:00:58] 2025-05-29 04:44:06,595 | INFO     | mean x: 1748484627.5
[2025-05-29 07:00:58] 2025-05-29 04:44:06,596 | INFO     | mean y: 2511836.83557047
[2025-05-29 07:00:58] 2025-05-29 04:44:06,596 | INFO     | -- intersect: 2940788117.5172725
[2025-05-29 07:00:58] 2025-05-29 04:44:06,596 | INFO     | intersect: 2940788117.5172725
[2025-05-29 07:00:58] 2025-05-29 04:44:06,596 | INFO     | chi2: 2.592881601020031
[2025-05-29 07:00:58] 2025-05-29 04:44:06,596 | INFO     | current chi2=2.592881601020031 (change=65.09171180088671 %)
[2025-05-29 07:00:58] 2025-05-29 04:44:06,597 | INFO     | sum of square deviations: 7799669962.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,600 | INFO     | sum of deviations: -69613499998.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,600 | INFO     | mean x: 1748484780.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,600 | INFO     | mean y: 2532709.0341296927
[2025-05-29 07:00:58] 2025-05-29 04:44:06,600 | INFO     | -- intersect: 15608083433.878124
[2025-05-29 07:00:58] 2025-05-29 04:44:06,600 | INFO     | intersect: 15608083433.878124
[2025-05-29 07:00:58] 2025-05-29 04:44:06,601 | INFO     | chi2: 1.0690669856528485
[2025-05-29 07:00:58] 2025-05-29 04:44:06,601 | INFO     | current chi2=1.0690669856528485 (change=58.769155320000685 %)
[2025-05-29 07:00:58] 2025-05-29 04:44:06,601 | INFO     | sum of square deviations: 7407141672.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,604 | INFO     | sum of deviations: -74031208600.5
[2025-05-29 07:00:58] 2025-05-29 04:44:06,604 | INFO     | mean x: 1748484932.5
[2025-05-29 07:00:58] 2025-05-29 04:44:06,604 | INFO     | mean y: 2534403.0520833335
[2025-05-29 07:00:58] 2025-05-29 04:44:06,604 | INFO     | -- intersect: 17477892443.259235
[2025-05-29 07:00:58] 2025-05-29 04:44:06,604 | INFO     | intersect: 17477892443.259235
[2025-05-29 07:00:58] 2025-05-29 04:44:06,605 | INFO     | chi2: 1.0307713521292332
[2025-05-29 07:00:58] 2025-05-29 04:44:06,605 | INFO     | current chi2=1.0307713521292332 (change=3.5821547234693876 %)
[2025-05-29 07:00:58] 2025-05-29 04:44:06,605 | INFO     | left removable region: 30
[2025-05-29 07:00:58] 2025-05-29 04:44:06,606 | INFO     | sum of square deviations: 5902093918.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,608 | INFO     | sum of deviations: -26847730042.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,608 | INFO     | mean x: 1748485207.0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,608 | INFO     | mean y: 2530912.4307116107
[2025-05-29 07:00:58] 2025-05-29 04:44:06,608 | INFO     | -- intersect: 7956124920.2796545
[2025-05-29 07:00:58] 2025-05-29 04:44:06,608 | INFO     | intersect: 7956124920.2796545
[2025-05-29 07:00:58] 2025-05-29 04:44:06,609 | INFO     | chi2: 0.1824793807639868
[2025-05-29 07:00:58] 2025-05-29 04:44:06,609 | INFO     | -- intersect: 7956124920.2796545
[2025-05-29 07:00:58] 2025-05-29 04:44:06,609 | INFO     | current memory leak: -4.55 B/s (using 267 data points, chi2=0.18)
[2025-05-29 07:00:58] 2025-05-29 04:44:06,610 | INFO     | ..............................
[2025-05-29 07:00:58] 2025-05-29 04:44:06,610 | INFO     | . Timing measurements:
[2025-05-29 07:00:58] 2025-05-29 04:44:06,610 | INFO     | . get job = 0 s
[2025-05-29 07:00:58] 2025-05-29 04:44:06,610 | INFO     | . initial setup = 10 s
[2025-05-29 07:00:58] 2025-05-29 04:44:06,610 | INFO     | . payload setup = 136 s
[2025-05-29 07:00:58] 2025-05-29 04:44:06,610 | INFO     | . stage-in = 0 s
[2025-05-29 07:00:58] 2025-05-29 04:44:06,610 | INFO     | . payload execution = 18624 s
[2025-05-29 07:00:58] 2025-05-29 04:44:06,611 | INFO     | . stage-out = 2 s
[2025-05-29 07:00:58] 2025-05-29 04:44:06,611 | INFO     | . log creation = 0 s
[2025-05-29 07:00:58] 2025-05-29 04:44:06,611 | INFO     | ..............................
[2025-05-29 07:00:58] 2025-05-29 04:44:06,729 | INFO     | 
[2025-05-29 07:00:58] 2025-05-29 04:44:06,729 | INFO     | job summary report
[2025-05-29 07:00:58] 2025-05-29 04:44:06,729 | INFO     | --------------------------------------------------
[2025-05-29 07:00:58] 2025-05-29 04:44:06,729 | INFO     | PanDA job id: 6668210796
[2025-05-29 07:00:58] 2025-05-29 04:44:06,729 | INFO     | task id: 44871837
[2025-05-29 07:00:58] 2025-05-29 04:44:06,729 | INFO     | errors: (none)
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | pilot state: finished 
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | transexitcode: 0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | exeerrorcode: 0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | exeerrordiag: 
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | exitcode: 0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | exitmsg: OK
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | cpuconsumptiontime: 68863 s
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | nevents: 400
[2025-05-29 07:00:58] 2025-05-29 04:44:06,730 | INFO     | neventsw: 0
[2025-05-29 07:00:58] 2025-05-29 04:44:06,731 | INFO     | pid: 20934
[2025-05-29 07:00:58] 2025-05-29 04:44:06,731 | INFO     | pgrp: 20934
[2025-05-29 07:00:58] 2025-05-29 04:44:06,731 | INFO     | corecount: 8
[2025-05-29 07:00:58] 2025-05-29 04:44:06,731 | INFO     | event service: False
[2025-05-29 07:00:58] 2025-05-29 04:44:06,731 | INFO     | sizes: {0: 2405061, 1: 2405260, 12: 2405260, 23: 2405288, 34: 2405316, 44: 2405344, 55: 2405500, 66: 2405528, 77: 2405556, 87: 2405612, 90: 2405846, 98: 2406154, 1
[2025-05-29 07:00:58] 2025-05-29 04:44:06,731 | INFO     | --------------------------------------------------
[2025-05-29 07:00:58] 2025-05-29 04:44:06,731 | INFO     | 
[2025-05-29 07:00:58] 2025-05-29 04:44:06,731 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-05-29 07:00:58] 2025-05-29 04:44:07,331 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,333 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,333 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,333 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,333 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-29 07:00:58] 2025-05-29 04:44:07,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-29 07:00:58] 2025-05-29 04:44:07,334 | INFO     | job 6668210796 has completed (purged errors)
[2025-05-29 07:00:58] 2025-05-29 04:44:07,334 | INFO     | overall cleanup function is called
[2025-05-29 07:00:58] 2025-05-29 04:44:08,345 | INFO     | --- collectZombieJob: --- 10, [20934]
[2025-05-29 07:00:58] 2025-05-29 04:44:08,345 | INFO     | zombie collector waiting for pid 20934
[2025-05-29 07:00:58] 2025-05-29 04:44:08,345 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-29 07:00:58] 2025-05-29 04:44:08,345 | INFO     | collected zombie processes
[2025-05-29 07:00:58] 2025-05-29 04:44:08,345 | INFO     | will attempt to kill all subprocesses of pid=20934
[2025-05-29 07:00:58] 2025-05-29 04:44:08,490 | INFO     | process IDs to be killed: [20934] (in reverse order)
[2025-05-29 07:00:58] 2025-05-29 04:44:09,351 | WARNING  | found no corresponding commands to process id(s)
[2025-05-29 07:00:58] 2025-05-29 04:44:09,352 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-29 07:00:58] 2025-05-29 04:44:09,355 | INFO     | did not find any defunct processes belonging to 20934
[2025-05-29 07:00:58] 2025-05-29 04:44:09,361 | INFO     | did not find any defunct processes belonging to 20934
[2025-05-29 07:00:58] 2025-05-29 04:44:09,361 | INFO     | ready for new job
[2025-05-29 07:00:58] 2025-05-29 04:44:09,362 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-29 07:00:58] 2025-05-29 04:44:09,364 | INFO     | **************************************
[2025-05-29 07:00:58] 2025-05-29 04:44:09,364 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-29 07:00:58] 2025-05-29 04:44:09,364 | INFO     | **************************************
[2025-05-29 07:00:58] 2025-05-29 04:44:09,364 | INFO     | 
[2025-05-29 07:00:58] 2025-05-29 04:44:09,365 | INFO     | pilot is running in a VM
[2025-05-29 07:00:58] 2025-05-29 04:44:09,365 | INFO     | architecture information:
[2025-05-29 07:00:58] 2025-05-29 04:44:09,381 | INFO     | executing command: cat /etc/os-release
[2025-05-29 07:00:58] 2025-05-29 04:44:09,581 | INFO     | cat /etc/os-release:
[2025-05-29 07:00:58] NAME="CentOS Linux"
[2025-05-29 07:00:58] VERSION="7 (Core)"
[2025-05-29 07:00:58] ID="centos"
[2025-05-29 07:00:58] ID_LIKE="rhel fedora"
[2025-05-29 07:00:58] VERSION_ID="7"
[2025-05-29 07:00:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-29 07:00:58] ANSI_COLOR="0;31"
[2025-05-29 07:00:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-29 07:00:58] HOME_URL="https://www.centos.org/"
[2025-05-29 07:00:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-29 07:00:58] 
[2025-05-29 07:00:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-29 07:00:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-29 07:00:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-29 07:00:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-29 07:00:58] 
[2025-05-29 07:00:58] 2025-05-29 04:44:09,581 | INFO     | **************************************
[2025-05-29 07:00:58] 2025-05-29 04:44:10,085 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-05-29 07:00:58] 2025-05-29 04:44:10,417 | INFO     | sufficient remaining disk space (496278437888 B)
[2025-05-29 07:00:58] 2025-05-29 04:44:10,418 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-29 07:00:58] 2025-05-29 04:44:10,418 | INFO     | current server update state: UPDATING_FINAL
[2025-05-29 07:00:58] 2025-05-29 04:44:10,418 | INFO     | update_server=False
[2025-05-29 07:00:58] 2025-05-29 04:44:10,418 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-29 07:00:58] 2025-05-29 04:44:10,418 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-29 07:00:58] 2025-05-29 04:44:10,419 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-29 07:00:58] 2025-05-29 04:44:10,430 | INFO     | found 0 job(s) in 20 queues
[2025-05-29 07:00:58] 2025-05-29 04:44:10,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-29 07:00:58] 2025-05-29 04:44:10,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-29 07:00:58] 2025-05-29 04:44:10,424 | INFO     | aborting loop
[2025-05-29 07:00:58] 2025-05-29 04:44:10,490 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-29 07:00:58] 2025-05-29 04:44:10,586 | INFO     | all payload control threads have been joined
[2025-05-29 07:00:58] 2025-05-29 04:44:10,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-29 07:00:58] 2025-05-29 04:44:11,002 | INFO     | all job control threads have been joined
[2025-05-29 07:00:58] 2025-05-29 04:44:11,425 | INFO     | [job] retrieve thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:11,443 | INFO     | [job] job monitor thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:11,478 | INFO     | all data control threads have been joined
[2025-05-29 07:00:58] 2025-05-29 04:44:11,516 | INFO     | [job] create_data_payload thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:11,562 | INFO     | [payload] validate_pre thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:11,592 | INFO     | [payload] control thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:11,593 | INFO     | [job] validate thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:11,673 | INFO     | [payload] failed_post thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:11,743 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-29 07:00:58] 2025-05-29 04:44:11,913 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:12,008 | INFO     | [job] control thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:12,483 | INFO     | [data] control thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:12,514 | INFO     | [data] copytool_in thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:12,601 | INFO     | [data] copytool_out thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:12,658 | INFO     | [payload] validate_post thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:12,665 | INFO     | [payload] execute_payloads thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:12,748 | INFO     | [job] queue monitor thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:14,498 | INFO     | [data] queue_monitor thread has finished
[2025-05-29 07:00:58] 2025-05-29 04:44:16,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140373117523776)>', '<ExcThread(monitor, started 140372533565184)>']
[2025-05-29 07:00:58] 2025-05-29 04:44:16,467 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-29 07:00:58] 2025-05-29 04:44:16,467 | INFO     | [monitor] control thread has ended
[2025-05-29 07:00:58] 2025-05-29 04:44:21,092 | INFO     | all workflow threads have been joined
[2025-05-29 07:00:58] 2025-05-29 04:44:21,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-29 07:00:58] 2025-05-29 04:44:21,092 | INFO     | traces error code: 0
[2025-05-29 07:00:58] 2025-05-29 04:44:21,093 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-29 07:00:58] 2025-05-29 04:44:21,425 [wrapper] ==== pilot stdout END ====
[2025-05-29 07:00:58] 2025-05-29 04:44:21,456 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-29 07:00:58] 2025-05-29 04:44:21,482 [wrapper] pilotpid: 11492
[2025-05-29 07:00:58] 2025-05-29 04:44:21,588 [wrapper] Pilot exit status: 0
[2025-05-29 07:00:58] 2025-05-29 04:44:21,994 [wrapper] pandaids: 6668210796
[2025-05-29 07:00:58] 2025-05-29 04:44:22,907 [wrapper] cleanup supervisor_pilot 23883 11493
[2025-05-29 07:00:58] 2025-05-29 04:44:23,009 [wrapper] Test setup, not cleaning
[2025-05-29 07:00:58] 2025-05-29 04:44:23,144 [wrapper] apfmon messages muted
[2025-05-29 07:00:58] 2025-05-29 04:44:23,186 [wrapper] ==== wrapper stdout END ====
[2025-05-29 07:00:58] 2025-05-29 04:44:23,231 [wrapper] ==== wrapper stderr END ====
[2025-05-29 07:00:58]  *** Error codes and diagnostics ***
[2025-05-29 07:00:58]     "exeErrorCode": 0,
[2025-05-29 07:00:58]     "exeErrorDiag": "",
[2025-05-29 07:00:58]     "pilotErrorCode": 0,
[2025-05-29 07:00:58]     "pilotErrorDiag": "",
[2025-05-29 07:00:58]  *** Listing of results directory ***
[2025-05-29 07:00:58] total 418420
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc    495897 May 28 09:03 pilot3.tar.gz
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc      5111 May 28 09:03 queuedata.json
[2025-05-29 07:00:58] -rwx------. 1 boinc boinc     37140 May 28 09:04 runpilot2-wrapper.sh
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc       100 May 29 01:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-29 07:00:58] -rwxr-xr-x. 1 boinc boinc      7986 May 29 01:23 run_atlas
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc       105 May 29 01:23 job.xml
[2025-05-29 07:00:58] -rw-r--r--. 2 boinc boinc 224487871 May 29 01:23 EVNT.44871834._003141.pool.root.1
[2025-05-29 07:00:58] drwxrwx--x. 2 boinc boinc        68 May 29 01:23 shared
[2025-05-29 07:00:58] -rw-r--r--. 2 boinc boinc    508879 May 29 01:23 input.tar.gz
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc      6372 May 29 01:23 init_data.xml
[2025-05-29 07:00:58] -rw-r--r--. 2 boinc boinc     15093 May 29 01:23 start_atlas.sh
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc         0 May 29 01:23 boinc_lockfile
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc      2558 May 29 01:23 pandaJob.out
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc    993733 May 29 01:26 agis_schedconf.cvmfs.json
[2025-05-29 07:00:58] drwx------. 4 boinc boinc      4096 May 29 01:26 pilot3
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc 196081287 May 29 06:41 HITS.44871837._080438.pool.root.1
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc       531 May 29 06:41 boinc_task_state.xml
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc      1018 May 29 06:42 memory_monitor_summary.json
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc   1603667 May 29 06:42 agis_ddmendpoints.agis.ALL.json
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc    413853 May 29 06:42 log.44871837._080438.job.log.tgz.1
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc        95 May 29 06:43 pilot_heartbeat.json
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc      7694 May 29 06:44 heartbeat.json
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc      4539 May 29 06:44 pilotlog.txt
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc   1617603 May 29 06:44 log.44871837._080438.job.log.1
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc       357 May 29 06:44 output.list
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc       620 May 29 06:44 runtime_log
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc   2048000 May 29 06:44 result.tar.gz
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc      8659 May 29 06:44 runtime_log.err
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc       657 May 29 06:44 1iANDmH1Pe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzVbKDmle41xn.diag
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc      8192 May 29 07:00 boinc_mmap_file
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc        28 May 29 07:00 wrapper_checkpoint.txt
[2025-05-29 07:00:58] -rw-r--r--. 1 boinc boinc     20499 May 29 07:00 stderr.txt
[2025-05-29 07:00:58] HITS file was successfully produced:
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc 196081287 May 29 06:41 shared/HITS.pool.root.1
[2025-05-29 07:00:58]  *** Contents of shared directory: ***
[2025-05-29 07:00:58] total 413232
[2025-05-29 07:00:58] -rw-r--r--. 2 boinc boinc 224487871 May 29 01:23 ATLAS.root_0
[2025-05-29 07:00:58] -rw-r--r--. 2 boinc boinc    508879 May 29 01:23 input.tar.gz
[2025-05-29 07:00:58] -rw-r--r--. 2 boinc boinc     15093 May 29 01:23 start_atlas.sh
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc 196081287 May 29 06:41 HITS.pool.root.1
[2025-05-29 07:00:58] -rw-------. 1 boinc boinc   2048000 May 29 06:44 result.tar.gz
07:01:00 (3889): run_atlas exited; CPU time 69127.508479
07:01:00 (3889): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN