Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
08:03:53 (1046878): wrapper (7.7.26015): starting
08:03:53 (1046878): wrapper: running run_atlas (--nthreads 8)
[2025-05-28 08:03:53] Arguments: --nthreads 8
[2025-05-28 08:03:53] Threads: 8
[2025-05-28 08:03:53] Checking for CVMFS
[2025-05-28 08:03:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 08:03:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 08:03:54] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 08:03:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 08:03:55] 2.12.6.0 8572 27205 276928 146517 2 494 32514009 32935936 33193 16776704 0 312919181 99.606 324002496 22801 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-05-28 08:03:55] CVMFS is ok
[2025-05-28 08:03:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-28 08:03:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-28 08:03:55] Further information can be found at the LHC@home message board.
[2025-05-28 08:03:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 08:03:55] Checking for apptainer binary...
[2025-05-28 08:03:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 08:03:55] Running /usr/bin/apptainer --version
[2025-05-28 08:03:55] apptainer version 1.4.1-1.el9
[2025-05-28 08:03:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 08:03:56] c7-2-38.aglt2.org
[2025-05-28 08:03:56] apptainer works
[2025-05-28 08:03:56] Set ATHENA_PROC_NUMBER=8
[2025-05-28 08:03:56] Set ATHENA_CORE_NUMBER=8
[2025-05-28 08:03:56] Starting ATLAS job with PandaID=6668191756
[2025-05-28 08:03:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 13:18:23]  *** The last 200 lines of the pilot log: ***
[2025-05-28 13:18:23] 2025-05-28 17:17:56,123 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 13:18:23] 2025-05-28 17:17:56,123 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 13:18:23] 2025-05-28 17:17:56,123 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 13:18:23] 2025-05-28 17:17:56,123 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 13:18:23] 2025-05-28 17:17:56,168 | INFO     | fitting pss+swap vs Time
[2025-05-28 13:18:23] 2025-05-28 17:17:56,169 | INFO     | sum of square deviations: 8884572459.663357
[2025-05-28 13:18:23] 2025-05-28 17:17:56,171 | INFO     | sum of deviations: 93325876518.91827
[2025-05-28 13:18:23] 2025-05-28 17:17:56,221 | INFO     | mean x: 1748443339.5522876
[2025-05-28 13:18:23] 2025-05-28 17:17:56,221 | INFO     | mean y: 2065506.473856209
[2025-05-28 13:18:23] 2025-05-28 17:17:56,221 | INFO     | -- intersect: -18364041354.403126
[2025-05-28 13:18:23] 2025-05-28 17:17:56,221 | INFO     | intersect: -18364041354.403126
[2025-05-28 13:18:23] 2025-05-28 17:17:56,221 | INFO     | chi2: 4.96211580104576
[2025-05-28 13:18:23] 2025-05-28 17:17:56,231 | INFO     | sum of square deviations: 8456132097.149518
[2025-05-28 13:18:23] 2025-05-28 17:17:56,233 | INFO     | sum of deviations: 139204854164.8439
[2025-05-28 13:18:23] 2025-05-28 17:17:56,233 | INFO     | mean x: 1748443187.0531561
[2025-05-28 13:18:23] 2025-05-28 17:17:56,233 | INFO     | mean y: 2081724.3222591362
[2025-05-28 13:18:23] 2025-05-28 17:17:56,233 | INFO     | -- intersect: -28780791588.559708
[2025-05-28 13:18:23] 2025-05-28 17:17:56,233 | INFO     | intersect: -28780791588.559708
[2025-05-28 13:18:23] 2025-05-28 17:17:56,233 | INFO     | chi2: 2.9386445095318336
[2025-05-28 13:18:23] 2025-05-28 17:17:56,233 | INFO     | current chi2=2.9386445095318336 (change=40.778397212888144 %)
[2025-05-28 13:18:23] 2025-05-28 17:17:56,234 | INFO     | sum of square deviations: 8041691997.135151
[2025-05-28 13:18:23] 2025-05-28 17:17:56,344 | INFO     | sum of deviations: 134444567415.97307
[2025-05-28 13:18:23] 2025-05-28 17:17:56,344 | INFO     | mean x: 1748443034.554054
[2025-05-28 13:18:23] 2025-05-28 17:17:56,344 | INFO     | mean y: 2079973.189189189
[2025-05-28 13:18:23] 2025-05-28 17:17:56,344 | INFO     | -- intersect: -29229164833.977528
[2025-05-28 13:18:23] 2025-05-28 17:17:56,344 | INFO     | intersect: -29229164833.977528
[2025-05-28 13:18:23] 2025-05-28 17:17:56,344 | INFO     | chi2: 2.9387879980932605
[2025-05-28 13:18:23] 2025-05-28 17:17:56,345 | INFO     | current chi2=2.9387879980932605 (change=-0.00488281454124351 %)
[2025-05-28 13:18:23] 2025-05-28 17:17:56,345 | INFO     | right removable region: 295
[2025-05-28 13:18:23] 2025-05-28 17:17:56,345 | INFO     | sum of square deviations: 8456122337.149516
[2025-05-28 13:18:23] 2025-05-28 17:17:56,347 | INFO     | sum of deviations: 30715695261.598
[2025-05-28 13:18:23] 2025-05-28 17:17:56,586 | INFO     | mean x: 1748443492.0531561
[2025-05-28 13:18:23] 2025-05-28 17:17:56,586 | INFO     | mean y: 2087720.2126245848
[2025-05-28 13:18:23] 2025-05-28 17:17:56,586 | INFO     | -- intersect: -6348891528.052646
[2025-05-28 13:18:23] 2025-05-28 17:17:56,586 | INFO     | intersect: -6348891528.052646
[2025-05-28 13:18:23] 2025-05-28 17:17:56,586 | INFO     | chi2: 2.6030250257588454
[2025-05-28 13:18:23] 2025-05-28 17:17:56,587 | INFO     | current chi2=2.6030250257588454 (change=47.54203387977643 %)
[2025-05-28 13:18:23] 2025-05-28 17:17:56,587 | INFO     | sum of square deviations: 8041672477.135151
[2025-05-28 13:18:23] 2025-05-28 17:17:56,589 | INFO     | sum of deviations: 13381596141.79733
[2025-05-28 13:18:23] 2025-05-28 17:17:56,589 | INFO     | mean x: 1748443644.554054
[2025-05-28 13:18:23] 2025-05-28 17:17:56,589 | INFO     | mean y: 2094090.2939189188
[2025-05-28 13:18:23] 2025-05-28 17:17:56,589 | INFO     | -- intersect: -2907371172.6397653
[2025-05-28 13:18:23] 2025-05-28 17:17:56,589 | INFO     | intersect: -2907371172.6397653
[2025-05-28 13:18:23] 2025-05-28 17:17:56,590 | INFO     | chi2: 2.46365068208248
[2025-05-28 13:18:23] 2025-05-28 17:17:56,710 | INFO     | current chi2=2.46365068208248 (change=5.3543220790101405 %)
[2025-05-28 13:18:23] 2025-05-28 17:17:56,710 | INFO     | left removable region: 20
[2025-05-28 13:18:23] 2025-05-28 17:17:56,710 | INFO     | sum of square deviations: 6448638933.0690975
[2025-05-28 13:18:23] 2025-05-28 17:17:56,712 | INFO     | sum of deviations: 23961350742.49818
[2025-05-28 13:18:23] 2025-05-28 17:17:56,712 | INFO     | mean x: 1748443614.0581818
[2025-05-28 13:18:23] 2025-05-28 17:17:56,712 | INFO     | mean y: 2122701.1563636363
[2025-05-28 13:18:23] 2025-05-28 17:17:56,712 | INFO     | -- intersect: -6494608023.692905
[2025-05-28 13:18:23] 2025-05-28 17:17:56,712 | INFO     | intersect: -6494608023.692905
[2025-05-28 13:18:23] 2025-05-28 17:17:56,712 | INFO     | chi2: 0.10894646516939266
[2025-05-28 13:18:23] 2025-05-28 17:17:56,712 | INFO     | -- intersect: -6494608023.692905
[2025-05-28 13:18:23] 2025-05-28 17:17:56,713 | INFO     | current memory leak: 3.72 B/s (using 275 data points, chi2=0.11)
[2025-05-28 13:18:23] 2025-05-28 17:17:56,713 | INFO     | ..............................
[2025-05-28 13:18:23] 2025-05-28 17:17:56,713 | INFO     | . Timing measurements:
[2025-05-28 13:18:23] 2025-05-28 17:17:56,713 | INFO     | . get job = 0 s
[2025-05-28 13:18:23] 2025-05-28 17:17:56,713 | INFO     | . initial setup = 11 s
[2025-05-28 13:18:23] 2025-05-28 17:17:56,713 | INFO     | . payload setup = 53 s
[2025-05-28 13:18:23] 2025-05-28 17:17:56,713 | INFO     | . stage-in = 0 s
[2025-05-28 13:18:23] 2025-05-28 17:17:56,713 | INFO     | . payload execution = 18640 s
[2025-05-28 13:18:23] 2025-05-28 17:17:56,714 | INFO     | . stage-out = 4 s
[2025-05-28 13:18:23] 2025-05-28 17:17:56,714 | INFO     | . log creation = 0 s
[2025-05-28 13:18:23] 2025-05-28 17:17:56,780 | INFO     | ..............................
[2025-05-28 13:18:23] 2025-05-28 17:17:57,932 | INFO     | 
[2025-05-28 13:18:23] 2025-05-28 17:17:57,932 | INFO     | job summary report
[2025-05-28 13:18:23] 2025-05-28 17:17:57,932 | INFO     | --------------------------------------------------
[2025-05-28 13:18:23] 2025-05-28 17:17:57,932 | INFO     | PanDA job id: 6668191756
[2025-05-28 13:18:23] 2025-05-28 17:17:57,932 | INFO     | task id: 44871837
[2025-05-28 13:18:23] 2025-05-28 17:17:57,932 | INFO     | errors: (none)
[2025-05-28 13:18:23] 2025-05-28 17:17:57,932 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 13:18:23] 2025-05-28 17:17:57,932 | INFO     | pilot state: finished 
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | transexitcode: 0
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | exeerrorcode: 0
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | exeerrordiag: 
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | exitcode: 0
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | exitmsg: OK
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | cpuconsumptiontime: 38120 s
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | nevents: 400
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | neventsw: 0
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | pid: 1114309
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | pgrp: 1114309
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | corecount: 8
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | event service: False
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | sizes: {0: 2405006, 1: 2405090, 2: 2405289, 13: 2405289, 24: 2405345, 31: 2405579, 35: 2405735, 18699: 2437638, 18700: 2437637, 18706: 2446634, 18707: 2446690, 187
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | --------------------------------------------------
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | 
[2025-05-28 13:18:23] 2025-05-28 17:17:57,933 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-05-28 13:18:23] 2025-05-28 17:17:58,079 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,079 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | job 6668191756 has completed (purged errors)
[2025-05-28 13:18:23] 2025-05-28 17:17:58,081 | INFO     | overall cleanup function is called
[2025-05-28 13:18:23] 2025-05-28 17:17:59,110 | INFO     | --- collectZombieJob: --- 10, [1114309]
[2025-05-28 13:18:23] 2025-05-28 17:17:59,110 | INFO     | zombie collector waiting for pid 1114309
[2025-05-28 13:18:23] 2025-05-28 17:17:59,110 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 13:18:23] 2025-05-28 17:17:59,111 | INFO     | collected zombie processes
[2025-05-28 13:18:23] 2025-05-28 17:17:59,111 | INFO     | will attempt to kill all subprocesses of pid=1114309
[2025-05-28 13:18:23] 2025-05-28 17:18:07,275 | INFO     | PID=1066464 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-28 13:18:23] 2025-05-28 17:18:07,276 | INFO     | .. there are 55 such processes running
[2025-05-28 13:18:23] 2025-05-28 17:18:08,354 | INFO     | process IDs to be killed: [1114309] (in reverse order)
[2025-05-28 13:18:23] 2025-05-28 17:18:08,641 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 13:18:23] 2025-05-28 17:18:08,641 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 13:18:23] 2025-05-28 17:18:08,744 | INFO     | did not find any defunct processes belonging to 1114309
[2025-05-28 13:18:23] 2025-05-28 17:18:08,901 | INFO     | did not find any defunct processes belonging to 1114309
[2025-05-28 13:18:23] 2025-05-28 17:18:08,902 | INFO     | ready for new job
[2025-05-28 13:18:23] 2025-05-28 17:18:08,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 13:18:23] 2025-05-28 17:18:08,903 | INFO     | **************************************
[2025-05-28 13:18:23] 2025-05-28 17:18:08,903 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 13:18:23] 2025-05-28 17:18:08,903 | INFO     | **************************************
[2025-05-28 13:18:23] 2025-05-28 17:18:08,903 | INFO     | 
[2025-05-28 13:18:23] 2025-05-28 17:18:08,924 | INFO     | architecture information:
[2025-05-28 13:18:23] 2025-05-28 17:18:08,948 | INFO     | executing command: cat /etc/os-release
[2025-05-28 13:18:23] 2025-05-28 17:18:09,107 | INFO     | cat /etc/os-release:
[2025-05-28 13:18:23] NAME="CentOS Linux"
[2025-05-28 13:18:23] VERSION="7 (Core)"
[2025-05-28 13:18:23] ID="centos"
[2025-05-28 13:18:23] ID_LIKE="rhel fedora"
[2025-05-28 13:18:23] VERSION_ID="7"
[2025-05-28 13:18:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 13:18:23] ANSI_COLOR="0;31"
[2025-05-28 13:18:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 13:18:23] HOME_URL="https://www.centos.org/"
[2025-05-28 13:18:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 13:18:23] 
[2025-05-28 13:18:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 13:18:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 13:18:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 13:18:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 13:18:23] 
[2025-05-28 13:18:23] 2025-05-28 17:18:09,107 | INFO     | **************************************
[2025-05-28 13:18:23] 2025-05-28 17:18:09,617 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-05-28 13:18:23] 2025-05-28 17:18:09,662 | INFO     | sufficient remaining disk space (73668755456 B)
[2025-05-28 13:18:23] 2025-05-28 17:18:09,663 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 13:18:23] 2025-05-28 17:18:09,663 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 13:18:23] 2025-05-28 17:18:09,663 | INFO     | update_server=False
[2025-05-28 13:18:23] 2025-05-28 17:18:09,663 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 13:18:23] 2025-05-28 17:18:09,664 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 13:18:23] 2025-05-28 17:18:09,687 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 13:18:23] 2025-05-28 17:18:09,687 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 13:18:23] 2025-05-28 17:18:09,687 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 13:18:23] 2025-05-28 17:18:09,687 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 13:18:23] 2025-05-28 17:18:09,688 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 13:18:23] 2025-05-28 17:18:09,689 | INFO     | aborting loop
[2025-05-28 13:18:23] 2025-05-28 17:18:09,849 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 13:18:23] 2025-05-28 17:18:10,056 | INFO     | all payload control threads have been joined
[2025-05-28 13:18:23] 2025-05-28 17:18:10,501 | INFO     | all data control threads have been joined
[2025-05-28 13:18:23] 2025-05-28 17:18:10,669 | INFO     | [job] retrieve thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:10,696 | INFO     | [job] job monitor thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:10,854 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:10,874 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:10,971 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:11,062 | INFO     | [payload] control thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:11,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 13:18:23] 2025-05-28 17:18:11,417 | INFO     | [payload] validate_post thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:11,422 | INFO     | all job control threads have been joined
[2025-05-28 13:18:23] 2025-05-28 17:18:11,507 | INFO     | [data] control thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:11,533 | INFO     | [payload] failed_post thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:11,671 | INFO     | [data] copytool_out thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:11,856 | INFO     | [data] copytool_in thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:11,856 | INFO     | [job] validate thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:11,856 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:12,131 | INFO     | [job] queue monitor thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:12,428 | INFO     | [job] control thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:13,858 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 13:18:23] 2025-05-28 17:18:14,288 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140195374606144)>', '<ExcThread(monitor, started 140194510534400)>']
[2025-05-28 13:18:23] 2025-05-28 17:18:14,718 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 13:18:23] 2025-05-28 17:18:14,718 | INFO     | [monitor] control thread has ended
[2025-05-28 13:18:23] 2025-05-28 17:18:19,334 | INFO     | all workflow threads have been joined
[2025-05-28 13:18:23] 2025-05-28 17:18:19,334 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 13:18:23] 2025-05-28 17:18:19,334 | INFO     | traces error code: 0
[2025-05-28 13:18:23] 2025-05-28 17:18:19,334 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 13:18:23] 2025-05-28 17:18:22,888 [wrapper] ==== pilot stdout END ====
[2025-05-28 13:18:23] 2025-05-28 17:18:22,925 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 13:18:23] 2025-05-28 17:18:22,966 [wrapper] pilotpid: 1066464
[2025-05-28 13:18:23] 2025-05-28 17:18:22,973 [wrapper] Pilot exit status: 0
[2025-05-28 13:18:23] 2025-05-28 17:18:23,016 [wrapper] pandaids: 6668191756
[2025-05-28 13:18:23] 2025-05-28 17:18:23,342 [wrapper] cleanup supervisor_pilot  323948 1066465
[2025-05-28 13:18:23] 2025-05-28 17:18:23,354 [wrapper] Test setup, not cleaning
[2025-05-28 13:18:23] 2025-05-28 17:18:23,362 [wrapper] apfmon messages muted
[2025-05-28 13:18:23] 2025-05-28 17:18:23,371 [wrapper] ==== wrapper stdout END ====
[2025-05-28 13:18:23] 2025-05-28 17:18:23,381 [wrapper] ==== wrapper stderr END ====
[2025-05-28 13:18:23]  *** Error codes and diagnostics ***
[2025-05-28 13:18:23]     "exeErrorCode": 0,
[2025-05-28 13:18:23]     "exeErrorDiag": "",
[2025-05-28 13:18:23]     "pilotErrorCode": 0,
[2025-05-28 13:18:23]     "pilotErrorDiag": "",
[2025-05-28 13:18:23]  *** Listing of results directory ***
[2025-05-28 13:18:23] total 410560
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas    495897 May 28 01:33 pilot3.tar.gz
[2025-05-28 13:18:23] -rwx------. 1 boincer umatlas     37140 May 28 02:22 runpilot2-wrapper.sh
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas      5111 May 28 02:22 queuedata.json
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas       100 May 28 08:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 13:18:23] -rwxr-xr-x. 1 boincer umatlas      7986 May 28 08:03 run_atlas
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas       105 May 28 08:03 job.xml
[2025-05-28 13:18:23] -rw-r--r--. 2 boincer umatlas 223999319 May 28 08:03 EVNT.44871834._003125.pool.root.1
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas      6925 May 28 08:03 init_data.xml
[2025-05-28 13:18:23] -rw-r--r--. 2 boincer umatlas     15093 May 28 08:03 start_atlas.sh
[2025-05-28 13:18:23] drwxrwx--x. 2 boincer umatlas      4096 May 28 08:03 shared
[2025-05-28 13:18:23] -rw-r--r--. 2 boincer umatlas    508875 May 28 08:03 input.tar.gz
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas         0 May 28 08:03 boinc_lockfile
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas      2558 May 28 08:03 pandaJob.out
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas    991545 May 28 08:04 agis_schedconf.cvmfs.json
[2025-05-28 13:18:23] drwx------. 4 boincer umatlas      4096 May 28 08:04 pilot3
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas 189060623 May 28 13:14 HITS.44871837._080022.pool.root.1
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas       531 May 28 13:14 boinc_task_state.xml
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas      1048 May 28 13:17 memory_monitor_summary.json
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas   1603667 May 28 13:17 agis_ddmendpoints.agis.ALL.json
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas    412174 May 28 13:17 log.44871837._080022.job.log.tgz.1
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas      7732 May 28 13:17 heartbeat.json
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas        95 May 28 13:18 pilot_heartbeat.json
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas      4476 May 28 13:18 pilotlog.txt
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas      8192 May 28 13:18 boinc_mmap_file
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas   1340518 May 28 13:18 log.44871837._080022.job.log.1
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas       357 May 28 13:18 output.list
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas       620 May 28 13:18 runtime_log
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas   1771520 May 28 13:18 result.tar.gz
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas      8655 May 28 13:18 runtime_log.err
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas       658 May 28 13:18 8I3LDmfMPe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmX3SKDmtuDjnm.diag
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas        28 May 28 13:18 wrapper_checkpoint.txt
[2025-05-28 13:18:23] -rw-r--r--. 1 boincer umatlas     21055 May 28 13:18 stderr.txt
[2025-05-28 13:18:23] HITS file was successfully produced:
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas 189060623 May 28 13:14 shared/HITS.pool.root.1
[2025-05-28 13:18:23]  *** Contents of shared directory: ***
[2025-05-28 13:18:23] total 405640
[2025-05-28 13:18:23] -rw-r--r--. 2 boincer umatlas 223999319 May 28 08:03 ATLAS.root_0
[2025-05-28 13:18:23] -rw-r--r--. 2 boincer umatlas     15093 May 28 08:03 start_atlas.sh
[2025-05-28 13:18:23] -rw-r--r--. 2 boincer umatlas    508875 May 28 08:03 input.tar.gz
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas 189060623 May 28 13:14 HITS.pool.root.1
[2025-05-28 13:18:23] -rw-------. 1 boincer umatlas   1771520 May 28 13:18 result.tar.gz
13:18:25 (1046878): run_atlas exited; CPU time 38927.178995
13:18:25 (1046878): called boinc_finish(0)

</stderr_txt>
]]>

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