Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:49:34 (46955): wrapper (7.7.26015): starting
07:49:34 (46955): wrapper: running run_atlas (--nthreads 8)
[2025-05-28 07:49:34] Arguments: --nthreads 8
[2025-05-28 07:49:34] Threads: 8
[2025-05-28 07:49:34] Checking for CVMFS
[2025-05-28 07:49:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 07:49:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 07:49:35] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 07:49:36] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/patatrack.cern.ch: Transport endpoint is not connected
[2025-05-28 07:49:36] 
[2025-05-28 07:49:36] CVMFS is ok
[2025-05-28 07:49:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-28 07:49:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-28 07:49:36] Further information can be found at the LHC@home message board.
[2025-05-28 07:49:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 07:49:36] Checking for apptainer binary...
[2025-05-28 07:49:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 07:49:36] Running /usr/bin/apptainer --version
[2025-05-28 07:49:40] apptainer version 1.3.2-1.el7
[2025-05-28 07:49:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 07:50:24] c-211-10.aglt2.org
[2025-05-28 07:50:24] apptainer works
[2025-05-28 07:50:25] Set ATHENA_PROC_NUMBER=8
[2025-05-28 07:50:25] Set ATHENA_CORE_NUMBER=8
[2025-05-28 07:50:25] Starting ATLAS job with PandaID=6668191641
[2025-05-28 07:50:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 21:56:17]  *** The last 200 lines of the pilot log: ***
[2025-05-28 21:56:17] 2025-05-29 01:55:55,238 | INFO     | -- intersect: -10874512213.590158
[2025-05-28 21:56:17] 2025-05-29 01:55:55,245 | INFO     | intersect: -10874512213.590158
[2025-05-28 21:56:17] 2025-05-29 01:55:55,252 | INFO     | chi2: 14.82496582086479
[2025-05-28 21:56:17] 2025-05-29 01:55:55,254 | INFO     | sum of square deviations: 167869030355.62436
[2025-05-28 21:56:17] 2025-05-29 01:55:55,294 | INFO     | sum of deviations: 1221180404221.7754
[2025-05-28 21:56:17] 2025-05-29 01:55:55,295 | INFO     | mean x: 1748458537.8539877
[2025-05-28 21:56:17] 2025-05-29 01:55:55,295 | INFO     | mean y: 2432546.4687116565
[2025-05-28 21:56:17] 2025-05-29 01:55:55,295 | INFO     | -- intersect: -12716907640.927616
[2025-05-28 21:56:17] 2025-05-29 01:55:55,295 | INFO     | intersect: -12716907640.927616
[2025-05-28 21:56:17] 2025-05-29 01:55:55,297 | INFO     | chi2: 12.534055950213322
[2025-05-28 21:56:17] 2025-05-29 01:55:55,297 | INFO     | current chi2=12.534055950213322 (change=15.453053304360548 %)
[2025-05-28 21:56:17] 2025-05-29 01:55:55,297 | INFO     | right removable region: 814
[2025-05-28 21:56:17] 2025-05-29 01:55:55,299 | INFO     | sum of square deviations: 167868605795.62442
[2025-05-28 21:56:17] 2025-05-29 01:55:55,360 | INFO     | PID=23392 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-28 21:56:17] 2025-05-29 01:55:55,360 | INFO     | .. there are 31 such processes running
[2025-05-28 21:56:17] 2025-05-29 01:55:55,381 | INFO     | sum of deviations: 765415845913.9575
[2025-05-28 21:56:17] 2025-05-29 01:55:55,381 | INFO     | mean x: 1748458842.8539877
[2025-05-28 21:56:17] 2025-05-29 01:55:55,381 | INFO     | mean y: 2439465.428220859
[2025-05-28 21:56:17] 2025-05-29 01:55:55,381 | INFO     | -- intersect: -7969855877.741346
[2025-05-28 21:56:17] 2025-05-29 01:55:55,381 | INFO     | intersect: -7969855877.741346
[2025-05-28 21:56:17] 2025-05-29 01:55:55,383 | INFO     | chi2: 9.647738905833998
[2025-05-28 21:56:17] 2025-05-29 01:55:55,383 | INFO     | current chi2=9.647738905833998 (change=34.922353127751 %)
[2025-05-28 21:56:17] 2025-05-29 01:55:55,384 | INFO     | sum of square deviations: 164797833614.45544
[2025-05-28 21:56:17] 2025-05-29 01:55:55,419 | INFO     | sum of deviations: 514958156300.1555
[2025-05-28 21:56:17] 2025-05-29 01:55:55,419 | INFO     | mean x: 1748458995.3592594
[2025-05-28 21:56:17] 2025-05-29 01:55:55,419 | INFO     | mean y: 2451901.9925925927
[2025-05-28 21:56:17] 2025-05-29 01:55:55,419 | INFO     | -- intersect: -5461110335.864691
[2025-05-28 21:56:17] 2025-05-29 01:55:55,419 | INFO     | intersect: -5461110335.864691
[2025-05-28 21:56:17] 2025-05-29 01:55:55,421 | INFO     | chi2: 6.135862692542391
[2025-05-28 21:56:17] 2025-05-29 01:55:55,421 | INFO     | current chi2=6.135862692542391 (change=36.40102875470616 %)
[2025-05-28 21:56:17] 2025-05-29 01:55:55,422 | INFO     | sum of square deviations: 161764736558.24106
[2025-05-28 21:56:17] 2025-05-29 01:55:55,450 | INFO     | sum of deviations: 314828011936.67883
[2025-05-28 21:56:17] 2025-05-29 01:55:55,451 | INFO     | mean x: 1748459147.8645964
[2025-05-28 21:56:17] 2025-05-29 01:55:55,451 | INFO     | mean y: 2461961.886956522
[2025-05-28 21:56:17] 2025-05-29 01:55:55,451 | INFO     | -- intersect: -3400405246.2979608
[2025-05-28 21:56:17] 2025-05-29 01:55:55,458 | INFO     | intersect: -3400405246.2979608
[2025-05-28 21:56:17] 2025-05-29 01:55:55,459 | INFO     | chi2: 3.953808196736997
[2025-05-28 21:56:17] 2025-05-29 01:55:55,459 | INFO     | current chi2=3.953808196736997 (change=35.56230973775688 %)
[2025-05-28 21:56:17] 2025-05-29 01:55:55,465 | INFO     | sum of square deviations: 158769180641.9549
[2025-05-28 21:56:17] 2025-05-29 01:55:55,512 | INFO     | sum of deviations: 189368701589.4179
[2025-05-28 21:56:17] 2025-05-29 01:55:55,513 | INFO     | mean x: 1748459300.3675
[2025-05-28 21:56:17] 2025-05-29 01:55:55,513 | INFO     | mean y: 2468344.42375
[2025-05-28 21:56:17] 2025-05-29 01:55:55,513 | INFO     | -- intersect: -2082970820.4933813
[2025-05-28 21:56:17] 2025-05-29 01:55:55,513 | INFO     | intersect: -2082970820.4933813
[2025-05-28 21:56:17] 2025-05-29 01:55:55,516 | INFO     | chi2: 3.0837656995547946
[2025-05-28 21:56:17] 2025-05-29 01:55:55,517 | INFO     | current chi2=3.0837656995547946 (change=22.00517713277624 %)
[2025-05-28 21:56:17] 2025-05-29 01:55:55,517 | INFO     | left removable region: 40
[2025-05-28 21:56:17] 2025-05-29 01:55:55,518 | INFO     | sum of square deviations: 143787252661.4957
[2025-05-28 21:56:17] 2025-05-29 01:55:55,552 | INFO     | sum of deviations: 137689084549.72748
[2025-05-28 21:56:17] 2025-05-29 01:55:55,552 | INFO     | mean x: 1748459727.3863049
[2025-05-28 21:56:17] 2025-05-29 01:55:55,552 | INFO     | mean y: 2487645.502583979
[2025-05-28 21:56:17] 2025-05-29 01:55:55,553 | INFO     | -- intersect: -1671818072.0052543
[2025-05-28 21:56:17] 2025-05-29 01:55:55,556 | INFO     | intersect: -1671818072.0052543
[2025-05-28 21:56:17] 2025-05-29 01:55:55,558 | INFO     | chi2: 0.06262433148233976
[2025-05-28 21:56:17] 2025-05-29 01:55:55,558 | INFO     | -- intersect: -1671818072.0052543
[2025-05-28 21:56:17] 2025-05-29 01:55:55,558 | INFO     | current memory leak: 0.96 B/s (using 774 data points, chi2=0.06)
[2025-05-28 21:56:17] 2025-05-29 01:55:55,559 | INFO     | ..............................
[2025-05-28 21:56:17] 2025-05-29 01:55:55,559 | INFO     | . Timing measurements:
[2025-05-28 21:56:17] 2025-05-29 01:55:55,559 | INFO     | . get job = 0 s
[2025-05-28 21:56:17] 2025-05-29 01:55:55,559 | INFO     | . initial setup = 15 s
[2025-05-28 21:56:17] 2025-05-29 01:55:55,560 | INFO     | . payload setup = 210 s
[2025-05-28 21:56:17] 2025-05-29 01:55:55,560 | INFO     | . stage-in = 1 s
[2025-05-28 21:56:17] 2025-05-29 01:55:55,560 | INFO     | . payload execution = 50089 s
[2025-05-28 21:56:17] 2025-05-29 01:55:55,560 | INFO     | . stage-out = 8 s
[2025-05-28 21:56:17] 2025-05-29 01:55:55,560 | INFO     | . log creation = 3 s
[2025-05-28 21:56:17] 2025-05-29 01:55:55,560 | INFO     | ..............................
[2025-05-28 21:56:17] 2025-05-29 01:55:56,347 | INFO     | 
[2025-05-28 21:56:17] 2025-05-29 01:55:56,348 | INFO     | job summary report
[2025-05-28 21:56:17] 2025-05-29 01:55:56,348 | INFO     | --------------------------------------------------
[2025-05-28 21:56:17] 2025-05-29 01:55:56,348 | INFO     | PanDA job id: 6668191641
[2025-05-28 21:56:17] 2025-05-29 01:55:56,348 | INFO     | task id: 44871837
[2025-05-28 21:56:17] 2025-05-29 01:55:56,348 | INFO     | errors: (none)
[2025-05-28 21:56:17] 2025-05-29 01:55:56,348 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 21:56:17] 2025-05-29 01:55:56,348 | INFO     | pilot state: finished 
[2025-05-28 21:56:17] 2025-05-29 01:55:56,349 | INFO     | transexitcode: 0
[2025-05-28 21:56:17] 2025-05-29 01:55:56,349 | INFO     | exeerrorcode: 0
[2025-05-28 21:56:17] 2025-05-29 01:55:56,358 | INFO     | exeerrordiag: 
[2025-05-28 21:56:17] 2025-05-29 01:55:56,358 | INFO     | exitcode: 0
[2025-05-28 21:56:17] 2025-05-29 01:55:56,359 | INFO     | exitmsg: OK
[2025-05-28 21:56:17] 2025-05-29 01:55:56,359 | INFO     | cpuconsumptiontime: 77094 s
[2025-05-28 21:56:17] 2025-05-29 01:55:56,360 | INFO     | nevents: 400
[2025-05-28 21:56:17] 2025-05-29 01:55:56,360 | INFO     | neventsw: 0
[2025-05-28 21:56:17] 2025-05-29 01:55:56,360 | INFO     | pid: 1262
[2025-05-28 21:56:17] 2025-05-29 01:55:56,360 | INFO     | pgrp: 1262
[2025-05-28 21:56:17] 2025-05-29 01:55:56,360 | INFO     | corecount: 8
[2025-05-28 21:56:17] 2025-05-29 01:55:56,360 | INFO     | event service: False
[2025-05-28 21:56:17] 2025-05-29 01:55:56,360 | INFO     | sizes: {0: 2405007, 1: 2405063, 2: 2405091, 3: 2405318, 14: 2405318, 26: 2405346, 37: 2405502, 48: 2405530, 59: 2405558, 71: 2405586, 76: 2405820, 83: 2406156, 503
[2025-05-28 21:56:17] 2025-05-29 01:55:56,360 | INFO     | --------------------------------------------------
[2025-05-28 21:56:17] 2025-05-29 01:55:56,361 | INFO     | 
[2025-05-28 21:56:17] 2025-05-29 01:55:56,361 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-05-28 21:56:17] 2025-05-29 01:55:56,520 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,521 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,521 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,521 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,521 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,522 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,522 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,522 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,522 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,522 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,522 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,522 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,523 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,523 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,523 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,523 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,523 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,523 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 21:56:17] 2025-05-29 01:55:56,524 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,524 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 21:56:17] 2025-05-29 01:55:56,524 | INFO     | job 6668191641 has completed (purged errors)
[2025-05-28 21:56:17] 2025-05-29 01:55:56,525 | INFO     | overall cleanup function is called
[2025-05-28 21:56:17] 2025-05-29 01:55:57,758 | INFO     | --- collectZombieJob: --- 10, [1262]
[2025-05-28 21:56:17] 2025-05-29 01:55:58,378 | INFO     | zombie collector waiting for pid 1262
[2025-05-28 21:56:17] 2025-05-29 01:55:58,378 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 21:56:17] 2025-05-29 01:55:58,378 | INFO     | collected zombie processes
[2025-05-28 21:56:17] 2025-05-29 01:55:58,396 | INFO     | will attempt to kill all subprocesses of pid=1262
[2025-05-28 21:56:17] 2025-05-29 01:56:00,197 | INFO     | process IDs to be killed: [1262] (in reverse order)
[2025-05-28 21:56:17] 2025-05-29 01:56:01,003 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 21:56:17] 2025-05-29 01:56:01,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 21:56:17] 2025-05-29 01:56:01,014 | INFO     | did not find any defunct processes belonging to 1262
[2025-05-28 21:56:17] 2025-05-29 01:56:01,024 | INFO     | did not find any defunct processes belonging to 1262
[2025-05-28 21:56:17] 2025-05-29 01:56:01,025 | INFO     | ready for new job
[2025-05-28 21:56:17] 2025-05-29 01:56:01,025 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 21:56:17] 2025-05-29 01:56:01,027 | INFO     | **************************************
[2025-05-28 21:56:17] 2025-05-29 01:56:01,027 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 21:56:17] 2025-05-29 01:56:01,028 | INFO     | **************************************
[2025-05-28 21:56:17] 2025-05-29 01:56:01,028 | INFO     | 
[2025-05-28 21:56:17] 2025-05-29 01:56:01,030 | INFO     | architecture information:
[2025-05-28 21:56:17] 2025-05-29 01:56:01,039 | INFO     | executing command: cat /etc/os-release
[2025-05-28 21:56:17] 2025-05-29 01:56:01,142 | INFO     | cat /etc/os-release:
[2025-05-28 21:56:17] NAME="CentOS Linux"
[2025-05-28 21:56:17] VERSION="7 (Core)"
[2025-05-28 21:56:17] ID="centos"
[2025-05-28 21:56:17] ID_LIKE="rhel fedora"
[2025-05-28 21:56:17] VERSION_ID="7"
[2025-05-28 21:56:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 21:56:17] ANSI_COLOR="0;31"
[2025-05-28 21:56:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 21:56:17] HOME_URL="https://www.centos.org/"
[2025-05-28 21:56:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 21:56:17] 
[2025-05-28 21:56:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 21:56:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 21:56:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 21:56:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 21:56:17] 
[2025-05-28 21:56:17] 2025-05-29 01:56:01,142 | INFO     | **************************************
[2025-05-28 21:56:17] 2025-05-29 01:56:01,646 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-05-28 21:56:17] 2025-05-29 01:56:02,484 | INFO     | sufficient remaining disk space (55977181184 B)
[2025-05-28 21:56:17] 2025-05-29 01:56:02,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 21:56:17] 2025-05-29 01:56:02,484 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 21:56:17] 2025-05-29 01:56:02,485 | INFO     | update_server=False
[2025-05-28 21:56:17] 2025-05-29 01:56:02,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 21:56:17] 2025-05-29 01:56:02,492 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 21:56:17] 2025-05-29 01:56:02,537 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-28 21:56:17] 2025-05-29 01:56:02,538 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-28 21:56:17] 2025-05-29 01:56:02,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 21:56:17] 2025-05-29 01:56:02,538 | INFO     | will abort loop
[2025-05-28 21:56:17] 2025-05-29 01:56:02,562 | INFO     | all payload control threads have been joined
[2025-05-28 21:56:17] 2025-05-29 01:56:03,324 | INFO     | all data control threads have been joined
[2025-05-28 21:56:17] 2025-05-29 01:56:03,404 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 21:56:17] 2025-05-29 01:56:03,405 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 21:56:17] 2025-05-29 01:56:03,405 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 21:56:17] 2025-05-29 01:56:03,490 | INFO     | [job] retrieve thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:03,543 | INFO     | [job] job monitor thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:03,581 | INFO     | [payload] control thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:03,756 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:03,763 | INFO     | all job control threads have been joined
[2025-05-28 21:56:17] 2025-05-29 01:56:04,044 | INFO     | [payload] failed_post thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,330 | INFO     | [data] control thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,394 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,425 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,426 | INFO     | [data] copytool_in thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,492 | INFO     | [job] validate thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,529 | INFO     | [data] copytool_out thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,552 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 21:56:17] 2025-05-29 01:56:04,769 | INFO     | [job] control thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,905 | INFO     | [payload] validate_post thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,913 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:04,989 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 21:56:17] 2025-05-29 01:56:06,007 | INFO     | [job] queue monitor thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:08,564 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 21:56:17] 2025-05-29 01:56:10,166 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140518829864768)>', '<ExcThread(monitor, started 140518310803200)>']
[2025-05-28 21:56:17] 2025-05-29 01:56:10,445 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 21:56:17] 2025-05-29 01:56:10,446 | INFO     | [monitor] control thread has ended
[2025-05-28 21:56:17] 2025-05-29 01:56:15,193 | INFO     | all workflow threads have been joined
[2025-05-28 21:56:17] 2025-05-29 01:56:15,193 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 21:56:17] 2025-05-29 01:56:15,194 | INFO     | traces error code: 0
[2025-05-28 21:56:17] 2025-05-29 01:56:15,194 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 21:56:17] 2025-05-29 01:56:15,392 [wrapper] ==== pilot stdout END ====
[2025-05-28 21:56:17] 2025-05-29 01:56:15,396 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 21:56:17] 2025-05-29 01:56:15,402 [wrapper] pilotpid: 23392
[2025-05-28 21:56:17] 2025-05-29 01:56:15,413 [wrapper] Pilot exit status: 0
[2025-05-28 21:56:17] 2025-05-29 01:56:15,553 [wrapper] pandaids: 6668191641
[2025-05-28 21:56:17] 2025-05-29 01:56:15,896 [wrapper] cleanup supervisor_pilot 13583 23393
[2025-05-28 21:56:17] 2025-05-29 01:56:15,906 [wrapper] Test setup, not cleaning
[2025-05-28 21:56:17] 2025-05-29 01:56:15,937 [wrapper] apfmon messages muted
[2025-05-28 21:56:17] 2025-05-29 01:56:15,956 [wrapper] ==== wrapper stdout END ====
[2025-05-28 21:56:17] 2025-05-29 01:56:15,970 [wrapper] ==== wrapper stderr END ====
[2025-05-28 21:56:17]  *** Error codes and diagnostics ***
[2025-05-28 21:56:17]     "exeErrorCode": 0,
[2025-05-28 21:56:17]     "exeErrorDiag": "",
[2025-05-28 21:56:17]     "pilotErrorCode": 0,
[2025-05-28 21:56:17]     "pilotErrorDiag": "",
[2025-05-28 21:56:17]  *** Listing of results directory ***
[2025-05-28 21:56:17] total 428188
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas    495897 May 28 01:33 pilot3.tar.gz
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas      5111 May 28 02:05 queuedata.json
[2025-05-28 21:56:17] -rwx------ 1 boincer umatlas     37140 May 28 02:06 runpilot2-wrapper.sh
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas       100 May 28 07:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 21:56:17] -rwxr-xr-x 1 boincer umatlas      7986 May 28 07:49 run_atlas
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas       105 May 28 07:49 job.xml
[2025-05-28 21:56:17] -rw-r--r-- 2 boincer umatlas 221535095 May 28 07:49 EVNT.44871834._003120.pool.root.1
[2025-05-28 21:56:17] -rw-r--r-- 2 boincer umatlas     15093 May 28 07:49 start_atlas.sh
[2025-05-28 21:56:17] drwxrwx--x 2 boincer umatlas      4096 May 28 07:49 shared
[2025-05-28 21:56:17] -rw-r--r-- 2 boincer umatlas    508878 May 28 07:49 input.tar.gz
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas         0 May 28 07:49 boinc_lockfile
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas      2559 May 28 07:50 pandaJob.out
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas    991545 May 28 07:53 agis_schedconf.cvmfs.json
[2025-05-28 21:56:17] drwx------ 4 boincer umatlas      4096 May 28 07:53 pilot3
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas      6048 May 28 21:46 init_data.xml
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas 204136186 May 28 21:51 HITS.44871837._079907.pool.root.1
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas       531 May 28 21:52 boinc_task_state.xml
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas      1081 May 28 21:54 memory_monitor_summary.json
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas   1603667 May 28 21:54 agis_ddmendpoints.agis.ALL.json
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas    699601 May 28 21:54 log.44871837._079907.job.log.tgz.1
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas        95 May 28 21:55 pilot_heartbeat.json
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas      7768 May 28 21:55 heartbeat.json
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas      8192 May 28 21:56 boinc_mmap_file
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas        28 May 28 21:56 wrapper_checkpoint.txt
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas      4539 May 28 21:56 pilotlog.txt
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas   3777511 May 28 21:56 log.44871837._079907.job.log.1
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas       357 May 28 21:56 output.list
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas       620 May 28 21:56 runtime_log
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas   4495360 May 28 21:56 result.tar.gz
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas      8660 May 28 21:56 runtime_log.err
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas       665 May 28 21:56 jjkMDm86Oe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmw1SKDmS0gsun.diag
[2025-05-28 21:56:17] -rw-r--r-- 1 boincer umatlas     20733 May 28 21:56 stderr.txt
[2025-05-28 21:56:17] HITS file was successfully produced:
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas 204136186 May 28 21:51 shared/HITS.pool.root.1
[2025-05-28 21:56:17]  *** Contents of shared directory: ***
[2025-05-28 21:56:17] total 420608
[2025-05-28 21:56:17] -rw-r--r-- 2 boincer umatlas 221535095 May 28 07:49 ATLAS.root_0
[2025-05-28 21:56:17] -rw-r--r-- 2 boincer umatlas     15093 May 28 07:49 start_atlas.sh
[2025-05-28 21:56:17] -rw-r--r-- 2 boincer umatlas    508878 May 28 07:49 input.tar.gz
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas 204136186 May 28 21:51 HITS.pool.root.1
[2025-05-28 21:56:17] -rw------- 1 boincer umatlas   4495360 May 28 21:56 result.tar.gz
21:56:19 (46955): run_atlas exited; CPU time 79011.647569
21:56:19 (46955): called boinc_finish(0)

</stderr_txt>
]]>

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