Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:22:06 (4745): wrapper (7.7.26015): starting
07:22:06 (4745): wrapper: running run_atlas (--nthreads 8)
[2025-05-28 07:22:06] Arguments: --nthreads 8
[2025-05-28 07:22:06] Threads: 8
[2025-05-28 07:22:06] Checking for CVMFS
[2025-05-28 07:22:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 07:22:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 07:22:07] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 07:22:07] /usr/bin/cvmfs_config: line 944: cd: /cvmfs/patatrack.cern.ch: Transport endpoint is not connected
[2025-05-28 07:22:07] 
[2025-05-28 07:22:07] CVMFS is ok
[2025-05-28 07:22:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-28 07:22:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-28 07:22:07] Further information can be found at the LHC@home message board.
[2025-05-28 07:22:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 07:22:07] Checking for apptainer binary...
[2025-05-28 07:22:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 07:22:07] Running /usr/bin/apptainer --version
[2025-05-28 07:22:07] apptainer version 1.3.2-1.el7
[2025-05-28 07:22:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 07:22:14] c-211-10.aglt2.org
[2025-05-28 07:22:14] apptainer works
[2025-05-28 07:22:14] Set ATHENA_PROC_NUMBER=8
[2025-05-28 07:22:14] Set ATHENA_CORE_NUMBER=8
[2025-05-28 07:22:14] Starting ATLAS job with PandaID=6668046619
[2025-05-28 07:22:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 20:56:04]  *** The last 200 lines of the pilot log: ***
[2025-05-28 20:56:04] 2025-05-28 23:37:39,442 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 20:56:04] 2025-05-28 23:37:39,443 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 20:56:04] 2025-05-28 23:37:39,443 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 20:56:04] 2025-05-28 23:37:39,466 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 20:56:04] 2025-05-28 23:37:39,496 | INFO     | fitting pss+swap vs Time
[2025-05-28 20:56:04] 2025-05-28 23:37:39,506 | INFO     | sum of square deviations: 114301394993.1325
[2025-05-28 20:56:04] 2025-05-28 23:37:39,617 | INFO     | sum of deviations: 140663061288.4969
[2025-05-28 20:56:04] 2025-05-28 23:37:39,617 | INFO     | mean x: 1748453479.6499302
[2025-05-28 20:56:04] 2025-05-28 23:37:39,617 | INFO     | mean y: 2440489.930264993
[2025-05-28 20:56:04] 2025-05-28 23:37:39,618 | INFO     | -- intersect: -2149263948.8726087
[2025-05-28 20:56:04] 2025-05-28 23:37:39,618 | INFO     | intersect: -2149263948.8726087
[2025-05-28 20:56:04] 2025-05-28 23:37:39,619 | INFO     | chi2: 10.822756409854206
[2025-05-28 20:56:04] 2025-05-28 23:37:39,620 | INFO     | sum of square deviations: 111927018181.00505
[2025-05-28 20:56:04] 2025-05-28 23:37:39,693 | INFO     | sum of deviations: 376519096838.8261
[2025-05-28 20:56:04] 2025-05-28 23:37:39,694 | INFO     | mean x: 1748453327.1544943
[2025-05-28 20:56:04] 2025-05-28 23:37:39,694 | INFO     | mean y: 2455638.2106741574
[2025-05-28 20:56:04] 2025-05-28 23:37:39,694 | INFO     | -- intersect: -5879288361.619871
[2025-05-28 20:56:04] 2025-05-28 23:37:39,694 | INFO     | intersect: -5879288361.619871
[2025-05-28 20:56:04] 2025-05-28 23:37:39,698 | INFO     | chi2: 6.826068066465256
[2025-05-28 20:56:04] 2025-05-28 23:37:39,699 | INFO     | current chi2=6.826068066465256 (change=36.92856229998795 %)
[2025-05-28 20:56:04] 2025-05-28 23:37:39,700 | INFO     | sum of square deviations: 109585758268.8486
[2025-05-28 20:56:04] 2025-05-28 23:37:39,730 | INFO     | sum of deviations: 471829826219.8879
[2025-05-28 20:56:04] 2025-05-28 23:37:39,731 | INFO     | mean x: 1748453174.659123
[2025-05-28 20:56:04] 2025-05-28 23:37:39,731 | INFO     | mean y: 2461818.916548798
[2025-05-28 20:56:04] 2025-05-28 23:37:39,731 | INFO     | -- intersect: -7525636453.936631
[2025-05-28 20:56:04] 2025-05-28 23:37:39,731 | INFO     | intersect: -7525636453.936631
[2025-05-28 20:56:04] 2025-05-28 23:37:39,736 | INFO     | chi2: 5.154908519780769
[2025-05-28 20:56:04] 2025-05-28 23:37:39,737 | INFO     | current chi2=5.154908519780769 (change=24.482022892424265 %)
[2025-05-28 20:56:04] 2025-05-28 23:37:39,737 | INFO     | right removable region: 706
[2025-05-28 20:56:04] 2025-05-28 23:37:39,738 | INFO     | sum of square deviations: 111926733921.005
[2025-05-28 20:56:04] 2025-05-28 23:37:39,770 | INFO     | sum of deviations: -95286214420.08975
[2025-05-28 20:56:04] 2025-05-28 23:37:39,770 | INFO     | mean x: 1748453632.1544943
[2025-05-28 20:56:04] 2025-05-28 23:37:39,770 | INFO     | mean y: 2455636.0280898875
[2025-05-28 20:56:04] 2025-05-28 23:37:39,770 | INFO     | -- intersect: 1490960856.011033
[2025-05-28 20:56:04] 2025-05-28 23:37:39,770 | INFO     | intersect: 1490960856.011033
[2025-05-28 20:56:04] 2025-05-28 23:37:39,772 | INFO     | chi2: 6.844604678807681
[2025-05-28 20:56:04] 2025-05-28 23:37:39,772 | INFO     | current chi2=6.844604678807681 (change=36.75728788854923 %)
[2025-05-28 20:56:04] 2025-05-28 23:37:39,773 | INFO     | sum of square deviations: 109585189748.84865
[2025-05-28 20:56:04] 2025-05-28 23:37:39,788 | INFO     | sum of deviations: -194494655309.68753
[2025-05-28 20:56:04] 2025-05-28 23:37:39,788 | INFO     | mean x: 1748453784.659123
[2025-05-28 20:56:04] 2025-05-28 23:37:39,789 | INFO     | mean y: 2462086.246110325
[2025-05-28 20:56:04] 2025-05-28 23:37:39,789 | INFO     | -- intersect: 3105663503.805983
[2025-05-28 20:56:04] 2025-05-28 23:37:39,789 | INFO     | intersect: 3105663503.805983
[2025-05-28 20:56:04] 2025-05-28 23:37:39,790 | INFO     | chi2: 6.02003768604724
[2025-05-28 20:56:04] 2025-05-28 23:37:39,790 | INFO     | current chi2=6.02003768604724 (change=12.04696299427594 %)
[2025-05-28 20:56:04] 2025-05-28 23:37:39,790 | INFO     | left removable region: 20
[2025-05-28 20:56:04] 2025-05-28 23:37:39,791 | INFO     | sum of square deviations: 100107759581.00865
[2025-05-28 20:56:04] 2025-05-28 23:37:39,807 | INFO     | sum of deviations: 62676415974.72019
[2025-05-28 20:56:04] 2025-05-28 23:37:39,807 | INFO     | mean x: 1748453754.174927
[2025-05-28 20:56:04] 2025-05-28 23:37:39,807 | INFO     | mean y: 2489054.9023323613
[2025-05-28 20:56:04] 2025-05-28 23:37:39,808 | INFO     | -- intersect: -1092199461.4314055
[2025-05-28 20:56:04] 2025-05-28 23:37:39,808 | INFO     | intersect: -1092199461.4314055
[2025-05-28 20:56:04] 2025-05-28 23:37:39,809 | INFO     | chi2: 0.003428563918888032
[2025-05-28 20:56:04] 2025-05-28 23:37:39,809 | INFO     | -- intersect: -1092199461.4314055
[2025-05-28 20:56:04] 2025-05-28 23:37:39,809 | INFO     | current memory leak: 0.63 B/s (using 686 data points, chi2=0.00)
[2025-05-28 20:56:04] 2025-05-28 23:37:39,810 | INFO     | ..............................
[2025-05-28 20:56:04] 2025-05-28 23:37:39,810 | INFO     | . Timing measurements:
[2025-05-28 20:56:04] 2025-05-28 23:37:39,810 | INFO     | . get job = 0 s
[2025-05-28 20:56:04] 2025-05-28 23:37:39,811 | INFO     | . initial setup = 6 s
[2025-05-28 20:56:04] 2025-05-28 23:37:39,811 | INFO     | . payload setup = 84 s
[2025-05-28 20:56:04] 2025-05-28 23:37:39,811 | INFO     | . stage-in = 0 s
[2025-05-28 20:56:04] 2025-05-28 23:37:39,811 | INFO     | . payload execution = 43772 s
[2025-05-28 20:56:04] 2025-05-28 23:37:39,811 | INFO     | . stage-out = 19 s
[2025-05-28 20:56:04] 2025-05-28 23:37:39,815 | INFO     | . log creation = 2 s
[2025-05-28 20:56:04] 2025-05-28 23:37:39,816 | INFO     | ..............................
[2025-05-28 20:56:04] 2025-05-28 23:37:41,378 | INFO     | 
[2025-05-28 20:56:04] 2025-05-28 23:37:41,379 | INFO     | job summary report
[2025-05-28 20:56:04] 2025-05-28 23:37:41,379 | INFO     | --------------------------------------------------
[2025-05-28 20:56:04] 2025-05-28 23:37:41,379 | INFO     | PanDA job id: 6668046619
[2025-05-28 20:56:04] 2025-05-28 23:37:41,379 | INFO     | task id: 44871837
[2025-05-28 20:56:04] 2025-05-28 23:37:41,379 | INFO     | errors: (none)
[2025-05-28 20:56:04] 2025-05-28 23:37:41,379 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 20:56:04] 2025-05-28 23:37:41,379 | INFO     | pilot state: finished 
[2025-05-28 20:56:04] 2025-05-28 23:37:41,379 | INFO     | transexitcode: 0
[2025-05-28 20:56:04] 2025-05-28 23:37:41,380 | INFO     | exeerrorcode: 0
[2025-05-28 20:56:04] 2025-05-28 23:37:41,380 | INFO     | exeerrordiag: 
[2025-05-28 20:56:04] 2025-05-28 23:37:41,380 | INFO     | exitcode: 0
[2025-05-28 20:56:04] 2025-05-28 23:37:41,380 | INFO     | exitmsg: OK
[2025-05-28 20:56:04] 2025-05-28 23:37:41,380 | INFO     | cpuconsumptiontime: 76167 s
[2025-05-28 20:56:04] 2025-05-28 23:37:41,406 | INFO     | nevents: 400
[2025-05-28 20:56:04] 2025-05-28 23:37:41,407 | INFO     | neventsw: 0
[2025-05-28 20:56:04] 2025-05-28 23:37:41,407 | INFO     | pid: 1419
[2025-05-28 20:56:04] 2025-05-28 23:37:41,407 | INFO     | pgrp: 1419
[2025-05-28 20:56:04] 2025-05-28 23:37:41,407 | INFO     | corecount: 8
[2025-05-28 20:56:04] 2025-05-28 23:37:41,407 | INFO     | event service: False
[2025-05-28 20:56:04] 2025-05-28 23:37:41,407 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405262, 23: 2405290, 34: 2405318, 40: 2405552, 45: 2405708, 43861: 2448241, 43862: 2448240, 43884: 2457237, 43887: 2457293, 43
[2025-05-28 20:56:04] 2025-05-28 23:37:41,407 | INFO     | --------------------------------------------------
[2025-05-28 20:56:04] 2025-05-28 23:37:41,407 | INFO     | 
[2025-05-28 20:56:04] 2025-05-28 23:37:41,408 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-05-28 20:56:04] 2025-05-28 23:37:41,584 | INFO     | PID=11580 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-05-28 20:56:04] 2025-05-28 23:37:41,585 | INFO     | .. there are 30 such processes running
[2025-05-28 20:56:04] 2025-05-28 23:37:41,630 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,631 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,631 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,631 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,631 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,633 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,634 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,634 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,634 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,634 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,634 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,636 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,636 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,637 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,637 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,637 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,637 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 20:56:04] 2025-05-28 23:37:41,637 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,637 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 20:56:04] 2025-05-28 23:37:41,638 | INFO     | job 6668046619 has completed (purged errors)
[2025-05-28 20:56:04] 2025-05-28 23:37:41,638 | INFO     | overall cleanup function is called
[2025-05-28 20:56:04] 2025-05-28 23:37:42,657 | INFO     | --- collectZombieJob: --- 10, [1419]
[2025-05-28 20:56:04] 2025-05-28 23:37:42,658 | INFO     | zombie collector waiting for pid 1419
[2025-05-28 20:56:04] 2025-05-28 23:37:42,658 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 20:56:04] 2025-05-28 23:37:42,658 | INFO     | collected zombie processes
[2025-05-28 20:56:04] 2025-05-28 23:37:42,658 | INFO     | will attempt to kill all subprocesses of pid=1419
[2025-05-28 20:56:04] 2025-05-28 23:37:45,070 | INFO     | process IDs to be killed: [1419] (in reverse order)
[2025-05-28 20:56:04] 2025-05-28 23:37:47,369 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 20:56:04] 2025-05-28 23:37:47,370 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 20:56:04] 2025-05-28 23:37:47,380 | INFO     | did not find any defunct processes belonging to 1419
[2025-05-28 20:56:04] 2025-05-28 23:37:47,390 | INFO     | did not find any defunct processes belonging to 1419
[2025-05-28 20:56:04] 2025-05-28 23:37:47,390 | INFO     | ready for new job
[2025-05-28 20:56:04] 2025-05-28 23:37:47,390 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 20:56:04] 2025-05-28 23:37:47,416 | INFO     | **************************************
[2025-05-28 20:56:04] 2025-05-28 23:37:47,416 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 20:56:04] 2025-05-28 23:37:47,417 | INFO     | **************************************
[2025-05-28 20:56:04] 2025-05-28 23:37:47,417 | INFO     | 
[2025-05-28 20:56:04] 2025-05-28 23:37:47,419 | INFO     | architecture information:
[2025-05-28 20:56:04] 2025-05-28 23:37:47,448 | INFO     | executing command: cat /etc/os-release
[2025-05-28 20:56:04] 2025-05-28 23:37:47,742 | INFO     | cat /etc/os-release:
[2025-05-28 20:56:04] NAME="CentOS Linux"
[2025-05-28 20:56:04] VERSION="7 (Core)"
[2025-05-28 20:56:04] ID="centos"
[2025-05-28 20:56:04] ID_LIKE="rhel fedora"
[2025-05-28 20:56:04] VERSION_ID="7"
[2025-05-28 20:56:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 20:56:04] ANSI_COLOR="0;31"
[2025-05-28 20:56:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 20:56:04] HOME_URL="https://www.centos.org/"
[2025-05-28 20:56:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 20:56:04] 
[2025-05-28 20:56:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 20:56:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 20:56:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 20:56:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 20:56:04] 
[2025-05-28 20:56:04] 2025-05-28 23:37:47,742 | INFO     | **************************************
[2025-05-28 20:56:04] 2025-05-28 23:37:48,246 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-05-28 20:56:04] 2025-05-28 23:37:48,504 | INFO     | sufficient remaining disk space (54760833024 B)
[2025-05-28 20:56:04] 2025-05-28 23:37:48,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 20:56:04] 2025-05-28 23:37:48,537 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 20:56:04] 2025-05-28 23:37:48,537 | INFO     | update_server=False
[2025-05-28 20:56:04] 2025-05-28 23:37:48,537 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 20:56:04] 2025-05-28 23:37:48,537 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 20:56:04] 2025-05-28 23:37:48,538 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 20:56:04] 2025-05-28 23:37:48,538 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 20:56:04] 2025-05-28 23:37:48,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 20:56:04] 2025-05-28 23:37:48,538 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 20:56:04] 2025-05-28 23:37:48,632 | INFO     | all data control threads have been joined
[2025-05-28 20:56:04] 2025-05-28 23:37:48,689 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 20:56:04] 2025-05-28 23:37:48,690 | INFO     | aborting loop
[2025-05-28 20:56:04] 2025-05-28 23:37:49,256 | INFO     | all payload control threads have been joined
[2025-05-28 20:56:04] 2025-05-28 23:37:49,458 | INFO     | all job control threads have been joined
[2025-05-28 20:56:04] 2025-05-28 23:37:49,555 | INFO     | [job] retrieve thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:49,638 | INFO     | [data] control thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:49,691 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:49,699 | INFO     | [job] job monitor thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:49,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 20:56:04] 2025-05-28 23:37:49,816 | INFO     | [payload] failed_post thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:50,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:50,262 | INFO     | [payload] control thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:50,282 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 20:56:04] 2025-05-28 23:37:50,455 | INFO     | [data] copytool_in thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:50,456 | INFO     | [job] validate thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:50,464 | INFO     | [job] control thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:50,478 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:50,487 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:51,149 | INFO     | [payload] validate_post thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:51,287 | INFO     | [job] queue monitor thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:51,826 | INFO     | [data] copytool_out thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:52,549 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 20:56:04] 2025-05-28 23:37:52,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140136157288256)>', '<ExcThread(monitor, started 140135580559104)>']
[2025-05-28 20:56:04] 2025-05-28 23:37:52,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 20:56:04] 2025-05-28 23:37:52,592 | INFO     | [monitor] control thread has ended
[2025-05-28 20:56:04] 2025-05-28 23:37:57,617 | INFO     | all workflow threads have been joined
[2025-05-28 20:56:04] 2025-05-28 23:37:57,618 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 20:56:04] 2025-05-28 23:37:57,618 | INFO     | traces error code: 0
[2025-05-28 20:56:04] 2025-05-28 23:37:57,618 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 20:56:04] 2025-05-28 23:37:59,844 [wrapper] ==== pilot stdout END ====
[2025-05-28 20:56:04] 2025-05-28 23:37:59,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 20:56:04] 2025-05-28 23:37:59,911 [wrapper] pilotpid: 11580
[2025-05-28 20:56:04] 2025-05-28 23:37:59,952 [wrapper] Pilot exit status: 0
[2025-05-28 20:56:04] 2025-05-28 23:38:00,147 [wrapper] pandaids: 6668046619
[2025-05-28 20:56:04] 2025-05-28 23:38:01,111 [wrapper] cleanup supervisor_pilot 43852 11581
[2025-05-28 20:56:04] 2025-05-28 23:38:01,255 [wrapper] Test setup, not cleaning
[2025-05-28 20:56:04] 2025-05-28 23:38:01,293 [wrapper] apfmon messages muted
[2025-05-28 20:56:04] 2025-05-28 23:38:01,332 [wrapper] ==== wrapper stdout END ====
[2025-05-28 20:56:04] 2025-05-28 23:38:01,368 [wrapper] ==== wrapper stderr END ====
[2025-05-28 20:56:04]  *** Error codes and diagnostics ***
[2025-05-28 20:56:04]     "exeErrorCode": 0,
[2025-05-28 20:56:04]     "exeErrorDiag": "",
[2025-05-28 20:56:04]     "pilotErrorCode": 0,
[2025-05-28 20:56:04]     "pilotErrorDiag": "",
[2025-05-28 20:56:04]  *** Listing of results directory ***
[2025-05-28 20:56:04] total 423608
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas    495897 May 28 00:31 pilot3.tar.gz
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas      5111 May 28 01:20 queuedata.json
[2025-05-28 20:56:04] -rwx------ 1 boincer umatlas     37140 May 28 01:23 runpilot2-wrapper.sh
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas       100 May 28 07:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 20:56:04] -rwxr-xr-x 1 boincer umatlas      7986 May 28 07:22 run_atlas
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas       105 May 28 07:22 job.xml
[2025-05-28 20:56:04] -rw-r--r-- 2 boincer umatlas 224339420 May 28 07:22 EVNT.44871834._003093.pool.root.1
[2025-05-28 20:56:04] -rw-r--r-- 2 boincer umatlas     15093 May 28 07:22 start_atlas.sh
[2025-05-28 20:56:04] drwxrwx--x 2 boincer umatlas      4096 May 28 07:22 shared
[2025-05-28 20:56:04] -rw-r--r-- 2 boincer umatlas    508885 May 28 07:22 input.tar.gz
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas         0 May 28 07:22 boinc_lockfile
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas      2559 May 28 07:22 pandaJob.out
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas    990995 May 28 07:23 agis_schedconf.cvmfs.json
[2025-05-28 20:56:04] drwx------ 4 boincer umatlas      4096 May 28 07:23 pilot3
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas 197790511 May 28 19:27 HITS.44871837._079145.pool.root.1
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas       531 May 28 19:29 boinc_task_state.xml
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas      1068 May 28 19:35 memory_monitor_summary.json
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas   1603667 May 28 19:35 agis_ddmendpoints.agis.ALL.json
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas    642494 May 28 19:36 log.44871837._079145.job.log.tgz.1
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas        95 May 28 19:37 pilot_heartbeat.json
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas      7771 May 28 19:37 heartbeat.json
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas      4476 May 28 19:37 pilotlog.txt
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas   3262421 May 28 19:38 log.44871837._079145.job.log.1
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas       357 May 28 19:38 output.list
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas       620 May 28 19:38 runtime_log
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas   3921920 May 28 19:38 result.tar.gz
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas       664 May 28 19:38 t4qMDm7QOe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGKbKDmle69Wo.diag
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas      8660 May 28 19:38 runtime_log.err
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas      6049 May 28 20:55 init_data.xml
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas        28 May 28 20:55 wrapper_checkpoint.txt
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas      8192 May 28 20:56 boinc_mmap_file
[2025-05-28 20:56:04] -rw-r--r-- 1 boincer umatlas     20746 May 28 20:56 stderr.txt
[2025-05-28 20:56:04] HITS file was successfully produced:
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas 197790511 May 28 19:27 shared/HITS.pool.root.1
[2025-05-28 20:56:04]  *** Contents of shared directory: ***
[2025-05-28 20:56:04] total 416592
[2025-05-28 20:56:04] -rw-r--r-- 2 boincer umatlas 224339420 May 28 07:22 ATLAS.root_0
[2025-05-28 20:56:04] -rw-r--r-- 2 boincer umatlas     15093 May 28 07:22 start_atlas.sh
[2025-05-28 20:56:04] -rw-r--r-- 2 boincer umatlas    508885 May 28 07:22 input.tar.gz
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas 197790511 May 28 19:27 HITS.pool.root.1
[2025-05-28 20:56:04] -rw------- 1 boincer umatlas   3921920 May 28 19:38 result.tar.gz
20:56:06 (4745): run_atlas exited; CPU time 77804.745807
20:56:06 (4745): called boinc_finish(0)

</stderr_txt>
]]>

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