Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-29 13:03:21 (15680): Detected: vboxwrapper 26206
2025-05-29 13:03:21 (15680): Detected: BOINC client v8.0.2
2025-05-29 13:03:22 (15680): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-05-29 13:03:22 (15680): Successfully copied 'init_data.xml' to the shared directory.
2025-05-29 13:03:23 (15680): Create VM. (boinc_06935bfd92bde6f6, slot#1)
2025-05-29 13:03:23 (15680): Setting Memory Size for VM. (4400MB)
2025-05-29 13:03:24 (15680): Setting CPU Count for VM. (4)
2025-05-29 13:03:24 (15680): Setting Chipset Options for VM.
2025-05-29 13:03:24 (15680): Setting Graphics Controller Options for VM.
2025-05-29 13:03:24 (15680): Setting Boot Options for VM.
2025-05-29 13:03:25 (15680): Setting Network Configuration for NAT.
2025-05-29 13:03:25 (15680): Enabling VM Network Access.
2025-05-29 13:03:25 (15680): Disabling USB Support for VM.
2025-05-29 13:03:25 (15680): Disabling COM Port Support for VM.
2025-05-29 13:03:26 (15680): Disabling LPT Port Support for VM.
2025-05-29 13:03:26 (15680): Disabling Audio Support for VM.
2025-05-29 13:03:26 (15680): Disabling Clipboard Support for VM.
2025-05-29 13:03:26 (15680): Disabling Drag and Drop Support for VM.
2025-05-29 13:03:27 (15680): Adding storage controller(s) to VM.
2025-05-29 13:03:27 (15680): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-29 13:03:27 (15680): Adding VirtualBox Guest Additions to VM.
2025-05-29 13:03:28 (15680): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-29 13:03:28 (15680): forwarding host port 61422 to guest port 80
2025-05-29 13:03:28 (15680): Enabling remote desktop for VM.
2025-05-29 13:03:28 (15680): Required extension pack not installed, remote desktop not enabled.
2025-05-29 13:03:28 (15680): Enabling shared directory for VM.
2025-05-29 13:03:29 (15680): Starting VM using VBoxManage interface. (boinc_06935bfd92bde6f6, slot#1)
2025-05-29 13:03:35 (15680): Successfully started VM. (PID = '16992')
2025-05-29 13:03:35 (15680): Reporting VM Process ID to BOINC.
2025-05-29 13:03:35 (15680): Guest Log: BIOS: VirtualBox 7.0.6
2025-05-29 13:03:35 (15680): Guest Log: CPUID EDX: 0x178bfbff
2025-05-29 13:03:35 (15680): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-29 13:03:35 (15680): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-29 13:03:35 (15680): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-29 13:03:35 (15680): Detected: Web Application Enabled (http://localhost:61422)
2025-05-29 13:03:35 (15680): Preference change detected
2025-05-29 13:03:35 (15680): Setting CPU throttle for VM. (100%)
2025-05-29 13:03:35 (15680): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-29 13:03:37 (15680): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-29 13:03:37 (15680): Guest Log: BIOS: Booting from Hard Disk...
2025-05-29 13:03:39 (15680): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-29 13:03:39 (15680): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-29 13:03:39 (15680): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-29 13:03:44 (15680): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-29 13:03:44 (15680): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-29 13:03:48 (15680): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-29 13:03:48 (15680): Guest Log: 00:00:00.000106 main     Log opened 2025-05-29T13:03:46.045953000Z
2025-05-29 13:03:48 (15680): Guest Log: 00:00:00.000171 main     OS Product: Linux
2025-05-29 13:03:48 (15680): Guest Log: 00:00:00.000195 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-29 13:03:48 (15680): Guest Log: 00:00:00.000214 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-29 13:03:48 (15680): Guest Log: 00:00:00.000231 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-29 13:03:48 (15680): Guest Log: 00:00:00.000232 main     Process ID: 1303
2025-05-29 13:03:48 (15680): Guest Log: 00:00:00.000232 main     Package type: LINUX_64BITS_GENERIC
2025-05-29 13:03:48 (15680): Guest Log: 00:00:00.000793 main     5.2.32 r132073 started. Verbose level = 0
2025-05-29 13:03:48 (15680): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-29 13:03:48 (15680): Guest Log: [INFO] Mounting shared directory
2025-05-29 13:03:48 (15680): Guest Log: [INFO] Checking for init_data.xml
2025-05-29 13:03:51 (15680): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-29 13:03:51 (15680): Guest Log: [INFO] Detected branch: prod
2025-05-29 13:03:51 (15680): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-29 13:03:51 (15680): Guest Log: Copying input files
2025-05-29 13:03:52 (15680): Guest Log: Copied input files into RunAtlas.
2025-05-29 13:03:52 (15680): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-29 13:03:52 (15680): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-29 13:03:52 (15680): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-29 13:03:52 (15680): Guest Log: Further information can be found at the LHC@home message board.
2025-05-29 13:03:58 (15680): Guest Log: 00:00:10.004499 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 488 388 000ns (GuestNow=1 748 516 637 559 942 000 ns GuestLast=1 748 523 826 048 330 000 ns fSetTimeLastLoop=true )
2025-05-29 13:04:00 (15680): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-29 13:04:00 (15680): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-29 13:04:00 (15680): Guest Log: 2.6.3.0 1579 0 30124 146558 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-29 13:04:00 (15680): Guest Log: copied the webapp to /var/www
2025-05-29 13:04:00 (15680): Guest Log: ATHENA_PROC_NUMBER=4
2025-05-29 13:04:00 (15680): Guest Log: ATHENA_CORE_NUMBER=4
2025-05-29 13:04:00 (15680): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-29 13:04:00 (15680): Guest Log:  *** Starting ATLAS job. (PandaID=6667729935 taskID=44871837) ***
2025-05-29 14:43:40 (15680): Status Report: Elapsed Time: '6000.000000'
2025-05-29 14:43:40 (15680): Status Report: CPU Time: '22849.609375'
2025-05-29 15:17:56 (15680): Guest Log:  *** Job finished ***
2025-05-29 15:17:56 (15680): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:46,895 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:47,899 | INFO     | [job] queue monitor thread has finished
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:49,361 | INFO     | [data] queue_monitor thread has finished
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:50,041 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399000323904)>', '<ExcThread(monitor, started 140398538233600)>']
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:50,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:50,918 | INFO     | [monitor] control thread has ended
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,052 | INFO     | all workflow threads have been joined
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,053 | INFO     | end of generic workflow (traces error code: 0)
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,053 | INFO     | traces error code: 0
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,101 [wrapper] ==== pilot stdout END ====
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,104 [wrapper] ==== wrapper stdout RESUME ====
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,107 [wrapper] pilotpid: 5892
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,110 [wrapper] Pilot exit status: 0
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,174 [wrapper] pandaids: 6667729935
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,192 [wrapper] cleanup supervisor_pilot  3558 5893
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,195 [wrapper] Test setup, not cleaning
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,199 [wrapper] apfmon messages muted
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,201 [wrapper] ==== wrapper stdout END ====
2025-05-29 15:17:56 (15680): Guest Log: 2025-05-29 13:17:55,204 [wrapper] ==== wrapper stderr END ====
2025-05-29 15:17:56 (15680): Guest Log:  *** Error codes and diagnostics ***
2025-05-29 15:17:56 (15680): Guest Log:     "exeErrorCode": 0,
2025-05-29 15:17:56 (15680): Guest Log:     "exeErrorDiag": "",
2025-05-29 15:17:56 (15680): Guest Log:     "pilotErrorCode": 0,
2025-05-29 15:17:56 (15680): Guest Log:     "pilotErrorDiag": "",
2025-05-29 15:17:56 (15680): Guest Log:  *** Listing of results directory ***
2025-05-29 15:17:56 (15680): Guest Log: total 197444
2025-05-29 15:17:56 (15680): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 22:42 pilot3.tar.gz
2025-05-29 15:17:56 (15680): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 23:01 queuedata.json
2025-05-29 15:17:56 (15680): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 23:04 runpilot2-wrapper.sh
2025-05-29 15:17:56 (15680): Guest Log: -rwxr-xr-x. 1 atlas atlas      8965 May 29 11:03 init_data.xml
2025-05-29 15:17:56 (15680): Guest Log: -rwxr-xr-x. 1 atlas atlas    508885 May 29 11:03 input.tar.gz
2025-05-29 15:17:56 (15680): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 29 11:03 start_atlas.sh
2025-05-29 15:17:56 (15680): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 29 11:03 EVNT.44871834._002928.pool.root.1 -> /data/./ATLAS.root_0
2025-05-29 15:17:56 (15680): Guest Log: -rw-r--r--. 1 atlas atlas      2559 May 29 11:04 pandaJob.out
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas    993012 May 29 11:04 agis_schedconf.cvmfs.json
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas   1603667 May 29 11:04 agis_ddmendpoints.agis.ALL.json
2025-05-29 15:17:56 (15680): Guest Log: drwx------. 4 atlas atlas      4096 May 29 11:04 pilot3
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas 196483481 May 29 13:17 HITS.44871837._074747.pool.root.1
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas        95 May 29 13:17 pilot_heartbeat.json
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas      1030 May 29 13:17 memory_monitor_summary.json
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas    265877 May 29 13:17 log.44871837._074747.job.log.tgz.1
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas      7715 May 29 13:17 heartbeat.json
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas      4536 May 29 13:17 pilotlog.txt
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas    697951 May 29 13:17 log.44871837._074747.job.log.1
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas       357 May 29 13:17 output.list
2025-05-29 15:17:56 (15680): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 29 13:17 runtime_log
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas    983040 May 29 13:17 result.tar.gz
2025-05-29 15:17:56 (15680): Guest Log: -rw-r--r--. 1 atlas atlas      8598 May 29 13:17 runtime_log.err
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas       655 May 29 13:17 IwPODmiWIe7n9Rq4apOajLDm4fhM0noT9bVof3QYDm7XSKDmuExKgn.diag
2025-05-29 15:17:56 (15680): Guest Log: Looking for outputfile HITS.44871837._074747.pool.root.1
2025-05-29 15:17:56 (15680): Guest Log: HITS file was successfully produced
2025-05-29 15:17:56 (15680): Guest Log: -rw-------. 1 atlas atlas 196483481 May 29 13:17 /home/atlas/RunAtlas/HITS.44871837._074747.pool.root.1
2025-05-29 15:17:57 (15680): Guest Log: Successfully finished the ATLAS job!
2025-05-29 15:17:57 (15680): Guest Log: Copying the results back to the shared directory!
2025-05-29 15:17:57 (15680): Guest Log:  *** Contents of shared directory: ***
2025-05-29 15:17:57 (15680): Guest Log: total 409852
2025-05-29 15:17:57 (15680): Guest Log: -rwxrwxrwx. 1 root root 221676121 May 29 11:03 ATLAS.root_0
2025-05-29 15:17:57 (15680): Guest Log: -rwxrwxrwx. 1 root root 196483481 May 29 13:17 HITS.pool.root.1
2025-05-29 15:17:57 (15680): Guest Log: -rwxrwxrwx. 1 root root      8965 May 29 11:03 init_data.xml
2025-05-29 15:17:57 (15680): Guest Log: -rwxrwxrwx. 1 root root    508885 May 28 09:28 input.tar.gz
2025-05-29 15:17:57 (15680): Guest Log: -rwxrwxrwx. 1 root root    983040 May 29 13:17 result.tar.gz
2025-05-29 15:17:57 (15680): Guest Log: -rwxrwxrwx. 1 root root     15093 May 28 09:28 start_atlas.sh
2025-05-29 15:17:57 (15680): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-29 15:17:57 (15680): VM Completion File Detected.
2025-05-29 15:17:57 (15680): Powering off VM.
2025-05-29 15:17:58 (15680): Successfully stopped VM.
2025-05-29 15:17:58 (15680): Deregistering VM. (boinc_06935bfd92bde6f6, slot#1)
2025-05-29 15:17:58 (15680): Removing network bandwidth throttle group from VM.
2025-05-29 15:17:58 (15680): Removing VM from VirtualBox.
15:18:03 (15680): called boinc_finish(0)

</stderr_txt>
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