Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-30 21:33:50 (8560): Detected: vboxwrapper 26206
2025-05-30 21:33:50 (8560): Detected: BOINC client v7.16.20
2025-05-30 21:33:51 (8560): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-05-30 21:33:51 (8560): Successfully copied 'init_data.xml' to the shared directory.
2025-05-30 21:33:52 (8560): Create VM. (boinc_1bd4888b731d008f, slot#2)
2025-05-30 21:33:52 (8560): Setting Memory Size for VM. (4800MB)
2025-05-30 21:33:52 (8560): Setting CPU Count for VM. (8)
2025-05-30 21:33:53 (8560): Setting Chipset Options for VM.
2025-05-30 21:33:53 (8560): Setting Graphics Controller Options for VM.
2025-05-30 21:33:53 (8560): Setting Boot Options for VM.
2025-05-30 21:33:53 (8560): Setting Network Configuration for NAT.
2025-05-30 21:33:54 (8560): Enabling VM Network Access.
2025-05-30 21:33:54 (8560): Disabling USB Support for VM.
2025-05-30 21:33:54 (8560): Disabling COM Port Support for VM.
2025-05-30 21:33:55 (8560): Disabling LPT Port Support for VM.
2025-05-30 21:33:55 (8560): Disabling Audio Support for VM.
2025-05-30 21:33:55 (8560): Disabling Clipboard Support for VM.
2025-05-30 21:33:55 (8560): Disabling Drag and Drop Support for VM.
2025-05-30 21:33:56 (8560): Adding storage controller(s) to VM.
2025-05-30 21:33:56 (8560): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-30 21:33:56 (8560): Adding VirtualBox Guest Additions to VM.
2025-05-30 21:33:57 (8560): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-30 21:33:57 (8560): forwarding host port 53002 to guest port 80
2025-05-30 21:33:57 (8560): Enabling remote desktop for VM.
2025-05-30 21:33:57 (8560): Required extension pack not installed, remote desktop not enabled.
2025-05-30 21:33:57 (8560): Enabling shared directory for VM.
2025-05-30 21:33:58 (8560): Starting VM using VBoxManage interface. (boinc_1bd4888b731d008f, slot#2)
2025-05-30 21:34:02 (8560): Successfully started VM. (PID = '6120')
2025-05-30 21:34:02 (8560): Reporting VM Process ID to BOINC.
2025-05-30 21:34:02 (8560): Guest Log: BIOS: VirtualBox 6.0.14
2025-05-30 21:34:02 (8560): Guest Log: CPUID EDX: 0x178bfbff
2025-05-30 21:34:02 (8560): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-30 21:34:02 (8560): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-30 21:34:02 (8560): Detected: Web Application Enabled (http://localhost:53002)
2025-05-30 21:34:02 (8560): Preference change detected
2025-05-30 21:34:02 (8560): Setting CPU throttle for VM. (80%)
2025-05-30 21:34:03 (8560): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-30 21:34:04 (8560): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-30 21:34:04 (8560): Guest Log: BIOS: Booting from Hard Disk...
2025-05-30 21:34:07 (8560): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-30 21:34:07 (8560): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-30 21:34:07 (8560): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-30 21:34:11 (8560): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-30 21:34:11 (8560): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-30 21:34:17 (8560): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-30 21:34:17 (8560): Guest Log: 00:00:00.000099 main     Log opened 2025-05-30T21:34:15.541556000Z
2025-05-30 21:34:17 (8560): Guest Log: 00:00:00.000186 main     OS Product: Linux
2025-05-30 21:34:17 (8560): Guest Log: 00:00:00.000215 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-30 21:34:17 (8560): Guest Log: 00:00:00.000238 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-30 21:34:17 (8560): Guest Log: 00:00:00.000259 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-30 21:34:17 (8560): Guest Log: 00:00:00.000259 main     Process ID: 1369
2025-05-30 21:34:17 (8560): Guest Log: 00:00:00.000260 main     Package type: LINUX_64BITS_GENERIC
2025-05-30 21:34:17 (8560): Guest Log: 00:00:00.000885 main     5.2.32 r132073 started. Verbose level = 0
2025-05-30 21:34:17 (8560): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-30 21:34:17 (8560): Guest Log: [INFO] Mounting shared directory
2025-05-30 21:34:17 (8560): Guest Log: [INFO] Checking for init_data.xml
2025-05-30 21:34:20 (8560): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-30 21:34:20 (8560): Guest Log: [INFO] Detected branch: prod
2025-05-30 21:34:20 (8560): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-30 21:34:20 (8560): Guest Log: Copying input files
2025-05-30 21:34:21 (8560): Guest Log: Copied input files into RunAtlas.
2025-05-30 21:34:21 (8560): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-30 21:34:21 (8560): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-30 21:34:21 (8560): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-30 21:34:21 (8560): Guest Log: Further information can be found at the LHC@home message board.
2025-05-30 21:34:27 (8560): Guest Log: 00:00:10.003291 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 614 881 000ns (GuestNow=1 748 633 666 928 914 000 ns GuestLast=1 748 640 855 543 795 000 ns fSetTimeLastLoop=true )
2025-05-30 21:34:29 (8560): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-30 21:34:29 (8560): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-30 21:34:29 (8560): Guest Log: 2.6.3.0 1647 0 32192 146610 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-30 21:34:29 (8560): Guest Log: copied the webapp to /var/www
2025-05-30 21:34:29 (8560): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-30 21:34:29 (8560): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-30 21:34:29 (8560): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-30 21:34:29 (8560): Guest Log:  *** Starting ATLAS job. (PandaID=6667883796 taskID=44871837) ***
2025-05-30 23:14:07 (8560): Status Report: Elapsed Time: '6000.000000'
2025-05-30 23:14:07 (8560): Status Report: CPU Time: '40438.968750'
2025-05-31 00:02:34 (8560): Guest Log:  *** Job finished ***
2025-05-31 00:02:34 (8560): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:21,689 | INFO     | [data] queue_monitor thread has finished
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:25,528 | INFO     | job.realtimelogging is not enabled
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:26,531 | INFO     | [payload] run_realtimelog thread has finished
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:27,957 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140064334628672)>', '<ExcThread(monitor, started 140063212025600)>']
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:28,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:28,004 | INFO     | [monitor] control thread has ended
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:32,964 | INFO     | all workflow threads have been joined
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:32,965 | INFO     | end of generic workflow (traces error code: 0)
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:32,965 | INFO     | traces error code: 0
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:32,965 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,054 [wrapper] ==== pilot stdout END ====
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,058 [wrapper] ==== wrapper stdout RESUME ====
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,062 [wrapper] pilotpid: 5976
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,066 [wrapper] Pilot exit status: 0
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,128 [wrapper] pandaids: 6667883796
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,157 [wrapper] cleanup supervisor_pilot  5936 5977
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,161 [wrapper] Test setup, not cleaning
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,164 [wrapper] apfmon messages muted
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,168 [wrapper] ==== wrapper stdout END ====
2025-05-31 00:02:34 (8560): Guest Log: 2025-05-30 22:02:33,172 [wrapper] ==== wrapper stderr END ====
2025-05-31 00:02:34 (8560): Guest Log:  *** Error codes and diagnostics ***
2025-05-31 00:02:34 (8560): Guest Log:     "exeErrorCode": 0,
2025-05-31 00:02:34 (8560): Guest Log:     "exeErrorDiag": "",
2025-05-31 00:02:34 (8560): Guest Log:     "pilotErrorCode": 0,
2025-05-31 00:02:34 (8560): Guest Log:     "pilotErrorDiag": "",
2025-05-31 00:02:34 (8560): Guest Log:  *** Listing of results directory ***
2025-05-31 00:02:34 (8560): Guest Log: total 196780
2025-05-31 00:02:34 (8560): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 28 01:31 pilot3.tar.gz
2025-05-31 00:02:34 (8560): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 28 01:36 queuedata.json
2025-05-31 00:02:34 (8560): Guest Log: -rwx------. 1 atlas atlas     37140 May 28 01:37 runpilot2-wrapper.sh
2025-05-31 00:02:34 (8560): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 30 19:34 start_atlas.sh
2025-05-31 00:02:34 (8560): Guest Log: -rwxr-xr-x. 1 atlas atlas    508878 May 30 19:34 input.tar.gz
2025-05-31 00:02:34 (8560): Guest Log: -rwxr-xr-x. 1 atlas atlas      9079 May 30 19:34 init_data.xml
2025-05-31 00:02:34 (8560): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 30 19:34 EVNT.44871834._003002.pool.root.1 -> /data/./ATLAS.root_0
2025-05-31 00:02:34 (8560): Guest Log: -rw-r--r--. 1 atlas atlas      2559 May 30 19:34 pandaJob.out
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas    987388 May 30 19:34 agis_schedconf.cvmfs.json
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas   1603667 May 30 19:34 agis_ddmendpoints.agis.ALL.json
2025-05-31 00:02:34 (8560): Guest Log: drwx------. 4 atlas atlas      4096 May 30 19:34 pilot3
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas 195531547 May 30 22:01 HITS.44871837._076757.pool.root.1
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas        95 May 30 22:01 pilot_heartbeat.json
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas      1028 May 30 22:01 memory_monitor_summary.json
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas    352361 May 30 22:02 log.44871837._076757.job.log.tgz.1
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas      7713 May 30 22:02 heartbeat.json
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas      4794 May 30 22:02 pilotlog.txt
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas    748342 May 30 22:02 log.44871837._076757.job.log.1
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas       357 May 30 22:02 output.list
2025-05-31 00:02:34 (8560): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 30 22:02 runtime_log
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas   1116160 May 30 22:02 result.tar.gz
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas       666 May 30 22:02 v4vLDmRuKe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcvaKDmu4S8Sn.diag
2025-05-31 00:02:34 (8560): Guest Log: -rw-r--r--. 1 atlas atlas      8631 May 30 22:02 runtime_log.err
2025-05-31 00:02:34 (8560): Guest Log: Looking for outputfile HITS.44871837._076757.pool.root.1
2025-05-31 00:02:34 (8560): Guest Log: HITS file was successfully produced
2025-05-31 00:02:34 (8560): Guest Log: -rw-------. 1 atlas atlas 195531547 May 30 22:01 /home/atlas/RunAtlas/HITS.44871837._076757.pool.root.1
2025-05-31 00:02:35 (8560): Guest Log: Successfully finished the ATLAS job!
2025-05-31 00:02:35 (8560): Guest Log: Copying the results back to the shared directory!
2025-05-31 00:02:35 (8560): Guest Log:  *** Contents of shared directory: ***
2025-05-31 00:02:35 (8560): Guest Log: total 411492
2025-05-31 00:02:35 (8560): Guest Log: -rwxrwxrwx. 1 root root 224172642 May 30 19:33 ATLAS.root_0
2025-05-31 00:02:35 (8560): Guest Log: -rwxrwxrwx. 1 root root 195531547 May 30 22:02 HITS.pool.root.1
2025-05-31 00:02:35 (8560): Guest Log: -rwxrwxrwx. 1 root root      9079 May 30 19:33 init_data.xml
2025-05-31 00:02:35 (8560): Guest Log: -rwxrwxrwx. 1 root root    508878 May 28 07:51 input.tar.gz
2025-05-31 00:02:35 (8560): Guest Log: -rwxrwxrwx. 1 root root   1116160 May 30 22:02 result.tar.gz
2025-05-31 00:02:35 (8560): Guest Log: -rwxrwxrwx. 1 root root     15093 May 28 07:51 start_atlas.sh
2025-05-31 00:02:35 (8560): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-31 00:02:35 (8560): VM Completion File Detected.
2025-05-31 00:02:35 (8560): Powering off VM.
2025-05-31 00:02:35 (8560): Successfully stopped VM.
2025-05-31 00:02:35 (8560): Deregistering VM. (boinc_1bd4888b731d008f, slot#2)
2025-05-31 00:02:35 (8560): Removing network bandwidth throttle group from VM.
2025-05-31 00:02:36 (8560): Removing VM from VirtualBox.
00:02:41 (8560): called boinc_finish(0)

</stderr_txt>
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