Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-28 11:48:51 (39897): Detected: vboxwrapper 26206
2025-05-28 11:48:51 (39897): Detected: BOINC client v8.2.1
2025-05-28 11:48:52 (39897): Detected: VirtualBox VboxManage Interface (Version: 6.1.44)
2025-05-28 11:48:52 (39897): Detected: Sandbox Configuration Enabled
2025-05-28 11:48:52 (39897): Successfully copied 'init_data.xml' to the shared directory.
2025-05-28 11:48:52 (39897): Create VM. (boinc_089f07cb5b88fb06, slot#3)
2025-05-28 11:48:52 (39897): Setting Memory Size for VM. (4200MB)
2025-05-28 11:48:52 (39897): Setting CPU Count for VM. (2)
2025-05-28 11:48:52 (39897): Setting Chipset Options for VM.
2025-05-28 11:48:52 (39897): Setting Graphics Controller Options for VM.
2025-05-28 11:48:52 (39897): Setting Boot Options for VM.
2025-05-28 11:48:52 (39897): Setting Network Configuration for NAT.
2025-05-28 11:48:52 (39897): Enabling VM Network Access.
2025-05-28 11:48:52 (39897): Disabling USB Support for VM.
2025-05-28 11:48:52 (39897): Disabling COM Port Support for VM.
2025-05-28 11:48:53 (39897): Disabling Audio Support for VM.
2025-05-28 11:48:53 (39897): Disabling Clipboard Support for VM.
2025-05-28 11:48:53 (39897): Disabling Drag and Drop Support for VM.
2025-05-28 11:48:53 (39897): Adding storage controller(s) to VM.
2025-05-28 11:48:53 (39897): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-28 11:48:53 (39897): Adding VirtualBox Guest Additions to VM.
2025-05-28 11:48:53 (39897): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-28 11:48:53 (39897): forwarding host port 62981 to guest port 80
2025-05-28 11:48:53 (39897): Enabling remote desktop for VM.
2025-05-28 11:48:53 (39897): Required extension pack not installed, remote desktop not enabled.
2025-05-28 11:48:53 (39897): Enabling shared directory for VM.
2025-05-28 11:48:53 (39897): Starting VM using VBoxManage interface. (boinc_089f07cb5b88fb06, slot#3)
2025-05-28 11:48:55 (39897): Successfully started VM. (PID = '39962')
2025-05-28 11:48:55 (39897): Reporting VM Process ID to BOINC.
2025-05-28 11:48:55 (39897): Guest Log: BIOS: VirtualBox 6.1.44
2025-05-28 11:48:55 (39897): Guest Log: CPUID EDX: 0x178bfbff
2025-05-28 11:48:55 (39897): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-28 11:48:55 (39897): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-28 11:48:55 (39897): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-28 11:48:55 (39897): Detected: Web Application Enabled (http://localhost:62981)
2025-05-28 11:48:55 (39897): Preference change detected
2025-05-28 11:48:55 (39897): Setting CPU throttle for VM. (100%)
2025-05-28 11:48:55 (39897): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-28 11:48:57 (39897): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-28 11:48:57 (39897): Guest Log: BIOS: Booting from Hard Disk...
2025-05-28 11:49:19 (39897): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-28 11:49:19 (39897): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-28 11:49:19 (39897): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-28 11:49:28 (39897): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-28 11:49:28 (39897): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-28 11:49:43 (39897): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-28 11:49:43 (39897): Guest Log: 00:00:00.000235 main     Log opened 2025-05-28T09:49:41.825690000Z
2025-05-28 11:49:43 (39897): Guest Log: 00:00:00.000385 main     OS Product: Linux
2025-05-28 11:49:43 (39897): Guest Log: 00:00:00.000452 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-28 11:49:43 (39897): Guest Log: 00:00:00.000513 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-28 11:49:43 (39897): Guest Log: 00:00:00.000576 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-28 11:49:43 (39897): Guest Log: 00:00:00.000577 main     Process ID: 1229
2025-05-28 11:49:43 (39897): Guest Log: 00:00:00.000578 main     Package type: LINUX_64BITS_GENERIC
2025-05-28 11:49:43 (39897): Guest Log: 00:00:00.002072 main     5.2.32 r132073 started. Verbose level = 0
2025-05-28 11:49:43 (39897): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-28 11:49:43 (39897): Guest Log: [INFO] Mounting shared directory
2025-05-28 11:49:43 (39897): Guest Log: [INFO] Checking for init_data.xml
2025-05-28 11:49:47 (39897): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-28 11:49:47 (39897): Guest Log: [INFO] Detected branch: prod
2025-05-28 11:49:47 (39897): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-28 11:49:47 (39897): Guest Log: Copying input files
2025-05-28 11:49:49 (39897): Guest Log: Copied input files into RunAtlas.
2025-05-28 11:49:49 (39897): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-28 11:49:49 (39897): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-28 11:49:49 (39897): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-28 11:49:49 (39897): Guest Log: Further information can be found at the LHC@home message board.
2025-05-28 11:49:58 (39897): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-28 11:49:58 (39897): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-28 11:49:58 (39897): Guest Log: 2.6.3.0 1504 0 30080 146513 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-28 11:50:01 (39897): Guest Log: copied the webapp to /var/www
2025-05-28 11:50:01 (39897): Guest Log: ATHENA_PROC_NUMBER=2
2025-05-28 11:50:01 (39897): Guest Log: ATHENA_CORE_NUMBER=2
2025-05-28 11:50:02 (39897): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-28 11:50:02 (39897): Guest Log:  *** Starting ATLAS job. (PandaID=6667883370 taskID=44871837) ***
2025-05-28 11:54:53 (39897): Guest Log:  *** Job finished ***
2025-05-28 11:54:53 (39897): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:40,437 | INFO     | [data] copytool_out thread has finished
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:40,822 | INFO     | [payload] failed_post thread has finished
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:43,247 | INFO     | [data] queue_monitor thread has finished
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:44,557 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140415838709568)>', '<ExcThread(monitor, started 140415399343872)>']
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:45,251 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:45,252 | INFO     | [monitor] control thread has ended
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,564 | INFO     | all workflow threads have been joined
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,564 | INFO     | end of generic workflow (traces error code: 0)
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,564 | INFO     | traces error code: 0
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,564 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,660 [wrapper] ==== pilot stdout END ====
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,667 [wrapper] ==== wrapper stdout RESUME ====
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,674 [wrapper] pilotpid: 5796
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,681 [wrapper] Pilot exit status: 0
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,769 [wrapper] pandaids: 6667883370
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,812 [wrapper] cleanup supervisor_pilot  5802 5797
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,818 [wrapper] Test setup, not cleaning
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,829 [wrapper] apfmon messages muted
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,836 [wrapper] ==== wrapper stdout END ====
2025-05-28 11:54:53 (39897): Guest Log: 2025-05-28 09:54:49,844 [wrapper] ==== wrapper stderr END ====
2025-05-28 11:54:53 (39897): Guest Log:  *** Error codes and diagnostics ***
2025-05-28 11:54:53 (39897): Guest Log:     "exeErrorCode": 65,
2025-05-28 11:54:53 (39897): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-05-28 11:54:53 (39897): Guest Log:     "pilotErrorCode": 1305,
2025-05-28 11:54:53 (39897): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-05-28 11:54:53 (39897): Guest Log:  *** Listing of results directory ***
2025-05-28 11:54:53 (39897): Guest Log: total 3884
2025-05-28 11:54:53 (39897): Guest Log: -rw-r--r--. 1 atlas atlas    5111 May 28 01:30 queuedata.json
2025-05-28 11:54:53 (39897): Guest Log: -rwx------. 1 atlas atlas   37140 May 28 01:31 runpilot2-wrapper.sh
2025-05-28 11:54:53 (39897): Guest Log: -rw-r--r--. 1 atlas atlas  495897 May 28 01:31 pilot3.tar.gz
2025-05-28 11:54:53 (39897): Guest Log: -rw-r--r--. 1 atlas atlas    7830 May 28 09:49 init_data.xml
2025-05-28 11:54:53 (39897): Guest Log: -rw-r-----. 1 atlas atlas  508876 May 28 09:49 input.tar.gz
2025-05-28 11:54:53 (39897): Guest Log: -rw-r-----. 1 atlas atlas   15093 May 28 09:49 start_atlas.sh
2025-05-28 11:54:53 (39897): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 May 28 09:49 EVNT.44871834._002999.pool.root.1 -> /data/./ATLAS.root_0
2025-05-28 11:54:53 (39897): Guest Log: -rw-r--r--. 1 atlas atlas    2558 May 28 09:50 pandaJob.out
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas  991351 May 28 09:50 agis_schedconf.cvmfs.json
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas 1603667 May 28 09:50 agis_ddmendpoints.agis.ALL.json
2025-05-28 11:54:53 (39897): Guest Log: drwx------. 4 atlas atlas    4096 May 28 09:50 pilot3
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas     961 May 28 09:52 memory_monitor_summary.json
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas   20537 May 28 09:52 log.44871837._076675.job.log.tgz.1
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas      95 May 28 09:53 pilot_heartbeat.json
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas    8378 May 28 09:54 heartbeat.json
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas    4722 May 28 09:54 pilotlog.txt
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas   78198 May 28 09:54 log.44871837._076675.job.log.1
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas     188 May 28 09:54 output.list
2025-05-28 11:54:53 (39897): Guest Log: -rw-r--r--. 1 atlas atlas     620 May 28 09:54 runtime_log
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas  122880 May 28 09:54 result.tar.gz
2025-05-28 11:54:53 (39897): Guest Log: -rw-r--r--. 1 atlas atlas    8469 May 28 09:54 runtime_log.err
2025-05-28 11:54:53 (39897): Guest Log: -rw-------. 1 atlas atlas     651 May 28 09:54 JozKDmaoKe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmIjSKDm6bymym.diag
2025-05-28 11:54:53 (39897): Guest Log: Looking for outputfile HITS.44871837._076675.pool.root.1
2025-05-28 11:54:53 (39897): Guest Log: No HITS file was produced
2025-05-28 11:54:53 (39897): Guest Log: Successfully finished the ATLAS job!
2025-05-28 11:54:53 (39897): Guest Log: Copying the results back to the shared directory!
2025-05-28 11:54:53 (39897): Guest Log:  *** Contents of shared directory: ***
2025-05-28 11:54:53 (39897): Guest Log: total 219352
2025-05-28 11:54:53 (39897): Guest Log: -rw-rw----. 1 root root 223956462 May 28 09:48 ATLAS.root_0
2025-05-28 11:54:53 (39897): Guest Log: -rw-rw-r--. 1 root root      7830 May 28 09:48 init_data.xml
2025-05-28 11:54:53 (39897): Guest Log: -rw-rw----. 1 root root    508876 May 28 09:48 input.tar.gz
2025-05-28 11:54:53 (39897): Guest Log: -rw-r--r--. 1 root root    122880 May 28  2025 result.tar.gz
2025-05-28 11:54:53 (39897): Guest Log: -rw-rw----. 1 root root     15093 May 28 09:48 start_atlas.sh
2025-05-28 11:54:53 (39897): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-28 11:54:54 (39897): VM Completion File Detected.
2025-05-28 11:54:54 (39897): Powering off VM.
2025-05-28 11:54:55 (39897): Successfully stopped VM.
2025-05-28 11:54:55 (39897): Deregistering VM. (boinc_089f07cb5b88fb06, slot#3)
2025-05-28 11:54:55 (39897): Removing network bandwidth throttle group from VM.
2025-05-28 11:54:55 (39897): Removing VM from VirtualBox.
11:55:00 (39897): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN