Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:40:44 (1976986): wrapper (7.7.26015): starting
13:40:44 (1976986): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 13:40:44] Arguments: --nthreads 4
[2025-06-03 13:40:44] Threads: 4
[2025-06-03 13:40:44] Checking for CVMFS
[2025-06-03 13:40:44] No cvmfs_config command found, will try listing directly
[2025-06-03 13:40:44] CVMFS is ok
[2025-06-03 13:40:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 13:40:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 13:40:44] Further information can be found at the LHC@home message board.
[2025-06-03 13:40:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 13:40:44] Checking for apptainer binary...
[2025-06-03 13:40:44] which: no apptainer in ((null))
[2025-06-03 13:40:44] apptainer is not installed, using version from CVMFS
[2025-06-03 13:40:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 13:40:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut31.grid.cesnet.cz
[2025-06-03 13:40:44] apptainer works
[2025-06-03 13:40:44] Set ATHENA_PROC_NUMBER=4
[2025-06-03 13:40:44] Set ATHENA_CORE_NUMBER=4
[2025-06-03 13:40:44] Starting ATLAS job with PandaID=6667820883
[2025-06-03 13:40:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 17:51:07]  *** The last 200 lines of the pilot log: ***
[2025-06-03 17:51:07] 2025-06-03 15:45:01,801 | INFO     | executing command: lscpu
[2025-06-03 17:51:07] 2025-06-03 15:45:01,847 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 17:51:07] 2025-06-03 15:45:03,147 | WARNING  | process 1989556 can no longer be monitored (due to stat problems) - aborting
[2025-06-03 17:51:07] 2025-06-03 15:45:03,148 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6667820883/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:51:07] 2025-06-03 15:45:03,435 | INFO     | number of running child processes to parent process 1989556: 1
[2025-06-03 17:51:07] 2025-06-03 15:45:03,435 | INFO     | maximum number of monitored processes: 6
[2025-06-03 17:51:07] 2025-06-03 15:45:05,332 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 17:51:07] 2025-06-03 15:45:05,332 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6667820883/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 17:51:07] 2025-06-03 15:45:05,333 | INFO     | extracted standard info from prmon json
[2025-06-03 17:51:07] 2025-06-03 15:45:05,333 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 17:51:07] 2025-06-03 15:45:05,333 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 17:51:07] 2025-06-03 15:45:05,333 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 17:51:07] 2025-06-03 15:45:05,334 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 17:51:07] 2025-06-03 15:45:05,339 | INFO     | fitting pss+swap vs Time
[2025-06-03 17:51:07] 2025-06-03 15:45:05,339 | INFO     | sum of square deviations: 4286517580.0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,341 | INFO     | sum of deviations: -107318077749.99994
[2025-06-03 17:51:07] 2025-06-03 15:45:05,341 | INFO     | mean x: 1748958168.5
[2025-06-03 17:51:07] 2025-06-03 15:45:05,342 | INFO     | mean y: 2464493.7
[2025-06-03 17:51:07] 2025-06-03 15:45:05,342 | INFO     | -- intersect: 43789717247.386475
[2025-06-03 17:51:07] 2025-06-03 15:45:05,342 | INFO     | intersect: 43789717247.386475
[2025-06-03 17:51:07] 2025-06-03 15:45:05,342 | INFO     | chi2: 1.897393100541323
[2025-06-03 17:51:07] 2025-06-03 15:45:05,343 | INFO     | sum of square deviations: 4024149870.0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,345 | INFO     | sum of deviations: -103061655374.00002
[2025-06-03 17:51:07] 2025-06-03 15:45:05,345 | INFO     | mean x: 1748958016.0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,345 | INFO     | mean y: 2466968.2723404258
[2025-06-03 17:51:07] 2025-06-03 15:45:05,345 | INFO     | -- intersect: 44794662619.91859
[2025-06-03 17:51:07] 2025-06-03 15:45:05,346 | INFO     | intersect: 44794662619.91859
[2025-06-03 17:51:07] 2025-06-03 15:45:05,346 | INFO     | chi2: 1.8899347137050702
[2025-06-03 17:51:07] 2025-06-03 15:45:05,346 | INFO     | current chi2=1.8899347137050702 (change=0.3930860101749557 %)
[2025-06-03 17:51:07] 2025-06-03 15:45:05,346 | INFO     | right removable region: 234
[2025-06-03 17:51:07] 2025-06-03 15:45:05,347 | INFO     | sum of square deviations: 4024149870.0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,349 | INFO     | sum of deviations: -145024320985.0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,349 | INFO     | mean x: 1748958321.0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,349 | INFO     | mean y: 2486214.655319149
[2025-06-03 17:51:07] 2025-06-03 15:45:05,349 | INFO     | -- intersect: 63032318881.918945
[2025-06-03 17:51:07] 2025-06-03 15:45:05,349 | INFO     | intersect: 63032318881.918945
[2025-06-03 17:51:07] 2025-06-03 15:45:05,350 | INFO     | chi2: 0.2877641893942392
[2025-06-03 17:51:07] 2025-06-03 15:45:05,350 | INFO     | current chi2=0.2877641893942392 (change=84.83370740031992 %)
[2025-06-03 17:51:07] 2025-06-03 15:45:05,350 | INFO     | sum of square deviations: 3772712597.5
[2025-06-03 17:51:07] 2025-06-03 15:45:05,352 | INFO     | sum of deviations: -139651025666.5
[2025-06-03 17:51:07] 2025-06-03 15:45:05,352 | INFO     | mean x: 1748958473.5
[2025-06-03 17:51:07] 2025-06-03 15:45:05,352 | INFO     | mean y: 2482939.5434782607
[2025-06-03 17:51:07] 2025-06-03 15:45:05,353 | INFO     | -- intersect: 64742067087.628365
[2025-06-03 17:51:07] 2025-06-03 15:45:05,353 | INFO     | intersect: 64742067087.628365
[2025-06-03 17:51:07] 2025-06-03 15:45:05,353 | INFO     | chi2: 0.27829430538988237
[2025-06-03 17:51:07] 2025-06-03 15:45:05,353 | INFO     | current chi2=0.27829430538988237 (change=3.290848671716763 %)
[2025-06-03 17:51:07] 2025-06-03 15:45:05,353 | INFO     | left removable region: 20
[2025-06-03 17:51:07] 2025-06-03 15:45:05,354 | INFO     | sum of square deviations: 3038856977.5
[2025-06-03 17:51:07] 2025-06-03 15:45:05,355 | INFO     | sum of deviations: -118394685188.49997
[2025-06-03 17:51:07] 2025-06-03 15:45:05,356 | INFO     | mean x: 1748958595.5
[2025-06-03 17:51:07] 2025-06-03 15:45:05,356 | INFO     | mean y: 2475886.73364486
[2025-06-03 17:51:07] 2025-06-03 15:45:05,356 | INFO     | -- intersect: 68142373175.448204
[2025-06-03 17:51:07] 2025-06-03 15:45:05,356 | INFO     | intersect: 68142373175.448204
[2025-06-03 17:51:07] 2025-06-03 15:45:05,356 | INFO     | chi2: 0.2626776505003341
[2025-06-03 17:51:07] 2025-06-03 15:45:05,357 | INFO     | -- intersect: 68142373175.448204
[2025-06-03 17:51:07] 2025-06-03 15:45:05,357 | INFO     | current memory leak: -38.96 B/s (using 214 data points, chi2=0.26)
[2025-06-03 17:51:07] 2025-06-03 15:45:05,357 | INFO     | ..............................
[2025-06-03 17:51:07] 2025-06-03 15:45:05,358 | INFO     | . Timing measurements:
[2025-06-03 17:51:07] 2025-06-03 15:45:05,358 | INFO     | . get job = 0 s
[2025-06-03 17:51:07] 2025-06-03 15:45:05,358 | INFO     | . initial setup = 1 s
[2025-06-03 17:51:07] 2025-06-03 15:45:05,358 | INFO     | . payload setup = 6 s
[2025-06-03 17:51:07] 2025-06-03 15:45:05,358 | INFO     | . stage-in = 0 s
[2025-06-03 17:51:07] 2025-06-03 15:45:05,358 | INFO     | . payload execution = 14620 s
[2025-06-03 17:51:07] 2025-06-03 15:45:05,358 | INFO     | . stage-out = 1 s
[2025-06-03 17:51:07] 2025-06-03 15:45:05,359 | INFO     | . log creation = 0 s
[2025-06-03 17:51:07] 2025-06-03 15:45:05,359 | INFO     | ..............................
[2025-06-03 17:51:07] 2025-06-03 15:45:05,473 | INFO     | 
[2025-06-03 17:51:07] 2025-06-03 15:45:05,474 | INFO     | job summary report
[2025-06-03 17:51:07] 2025-06-03 15:45:05,474 | INFO     | --------------------------------------------------
[2025-06-03 17:51:07] 2025-06-03 15:45:05,474 | INFO     | PanDA job id: 6667820883
[2025-06-03 17:51:07] 2025-06-03 15:45:05,474 | INFO     | task id: 44871837
[2025-06-03 17:51:07] 2025-06-03 15:45:05,474 | INFO     | errors: (none)
[2025-06-03 17:51:07] 2025-06-03 15:45:05,475 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 17:51:07] 2025-06-03 15:45:05,475 | INFO     | pilot state: finished 
[2025-06-03 17:51:07] 2025-06-03 15:45:05,475 | INFO     | transexitcode: 0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,475 | INFO     | exeerrorcode: 0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,475 | INFO     | exeerrordiag: 
[2025-06-03 17:51:07] 2025-06-03 15:45:05,475 | INFO     | exitcode: 0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,475 | INFO     | exitmsg: OK
[2025-06-03 17:51:07] 2025-06-03 15:45:05,475 | INFO     | cpuconsumptiontime: 56326 s
[2025-06-03 17:51:07] 2025-06-03 15:45:05,476 | INFO     | nevents: 400
[2025-06-03 17:51:07] 2025-06-03 15:45:05,476 | INFO     | neventsw: 0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,476 | INFO     | pid: 1989556
[2025-06-03 17:51:07] 2025-06-03 15:45:05,476 | INFO     | pgrp: 1989556
[2025-06-03 17:51:07] 2025-06-03 15:45:05,476 | INFO     | corecount: 4
[2025-06-03 17:51:07] 2025-06-03 15:45:05,476 | INFO     | event service: False
[2025-06-03 17:51:07] 2025-06-03 15:45:05,476 | INFO     | sizes: {0: 2405245, 4: 2405451, 11: 2405479, 14630: 2436094, 14632: 2445057, 14633: 2445113, 14636: 2445411}
[2025-06-03 17:51:07] 2025-06-03 15:45:05,476 | INFO     | --------------------------------------------------
[2025-06-03 17:51:07] 2025-06-03 15:45:05,477 | INFO     | 
[2025-06-03 17:51:07] 2025-06-03 15:45:05,477 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-06-03 17:51:07] 2025-06-03 15:45:05,496 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,496 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,496 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,497 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,497 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,497 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,497 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,497 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,497 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,497 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,498 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,498 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,498 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,498 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,498 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,498 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,498 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,499 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 17:51:07] 2025-06-03 15:45:05,499 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,499 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 17:51:07] 2025-06-03 15:45:05,499 | INFO     | job 6667820883 has completed (purged errors)
[2025-06-03 17:51:07] 2025-06-03 15:45:05,499 | INFO     | overall cleanup function is called
[2025-06-03 17:51:07] 2025-06-03 15:45:06,507 | INFO     | --- collectZombieJob: --- 10, [1989556]
[2025-06-03 17:51:07] 2025-06-03 15:45:06,508 | INFO     | zombie collector waiting for pid 1989556
[2025-06-03 17:51:07] 2025-06-03 15:45:06,508 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 17:51:07] 2025-06-03 15:45:06,508 | INFO     | collected zombie processes
[2025-06-03 17:51:07] 2025-06-03 15:45:06,508 | INFO     | will attempt to kill all subprocesses of pid=1989556
[2025-06-03 17:51:07] 2025-06-03 15:45:06,820 | INFO     | process IDs to be killed: [1989556] (in reverse order)
[2025-06-03 17:51:07] 2025-06-03 15:45:06,898 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 17:51:07] 2025-06-03 15:45:06,898 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 17:51:07] 2025-06-03 15:45:06,906 | INFO     | did not find any defunct processes belonging to 1989556
[2025-06-03 17:51:07] 2025-06-03 15:45:06,915 | INFO     | did not find any defunct processes belonging to 1989556
[2025-06-03 17:51:07] 2025-06-03 15:45:06,915 | INFO     | ready for new job
[2025-06-03 17:51:07] 2025-06-03 15:45:06,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 17:51:07] 2025-06-03 15:45:06,917 | INFO     | **************************************
[2025-06-03 17:51:07] 2025-06-03 15:45:06,917 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 17:51:07] 2025-06-03 15:45:06,918 | INFO     | **************************************
[2025-06-03 17:51:07] 2025-06-03 15:45:06,918 | INFO     | 
[2025-06-03 17:51:07] 2025-06-03 15:45:06,920 | INFO     | architecture information:
[2025-06-03 17:51:07] 2025-06-03 15:45:06,921 | INFO     | executing command: cat /etc/os-release
[2025-06-03 17:51:07] 2025-06-03 15:45:06,934 | INFO     | cat /etc/os-release:
[2025-06-03 17:51:07] NAME="CentOS Linux"
[2025-06-03 17:51:07] VERSION="7 (Core)"
[2025-06-03 17:51:07] ID="centos"
[2025-06-03 17:51:07] ID_LIKE="rhel fedora"
[2025-06-03 17:51:07] VERSION_ID="7"
[2025-06-03 17:51:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 17:51:07] ANSI_COLOR="0;31"
[2025-06-03 17:51:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 17:51:07] HOME_URL="https://www.centos.org/"
[2025-06-03 17:51:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 17:51:07] 
[2025-06-03 17:51:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 17:51:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 17:51:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 17:51:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 17:51:07] 
[2025-06-03 17:51:07] 2025-06-03 15:45:06,935 | INFO     | **************************************
[2025-06-03 17:51:07] 2025-06-03 15:45:07,438 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-06-03 17:51:07] 2025-06-03 15:45:07,452 | INFO     | sufficient remaining disk space (1650443943936 B)
[2025-06-03 17:51:07] 2025-06-03 15:45:07,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 17:51:07] 2025-06-03 15:45:07,453 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 17:51:07] 2025-06-03 15:45:07,453 | INFO     | update_server=False
[2025-06-03 17:51:07] 2025-06-03 15:45:07,453 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 17:51:07] 2025-06-03 15:45:07,453 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-03 17:51:07] 2025-06-03 15:45:07,454 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 17:51:07] 2025-06-03 15:45:07,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 17:51:07] 2025-06-03 15:45:07,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 17:51:07] 2025-06-03 15:45:07,454 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:51:07] 2025-06-03 15:45:07,454 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 17:51:07] 2025-06-03 15:45:07,455 | INFO     | aborting loop
[2025-06-03 17:51:07] 2025-06-03 15:45:07,802 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 17:51:07] 2025-06-03 15:45:08,075 | INFO     | all payload control threads have been joined
[2025-06-03 17:51:07] 2025-06-03 15:45:08,220 | INFO     | all data control threads have been joined
[2025-06-03 17:51:07] 2025-06-03 15:45:08,459 | INFO     | [job] retrieve thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:08,460 | INFO     | [job] job monitor thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:08,460 | INFO     | [job] queue monitor thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:08,472 | INFO     | [payload] validate_post thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:08,480 | INFO     | [data] copytool_in thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:08,551 | INFO     | [job] validate thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:08,614 | INFO     | [payload] failed_post thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:08,782 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 17:51:07] 2025-06-03 15:45:09,054 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:09,054 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:09,081 | INFO     | [payload] control thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:09,150 | INFO     | all job control threads have been joined
[2025-06-03 17:51:07] 2025-06-03 15:45:09,224 | INFO     | [data] control thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:09,370 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:10,155 | INFO     | [job] control thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:10,787 | INFO     | [data] copytool_out thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:11,808 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:18,507 | INFO     | job.realtimelogging is not enabled
[2025-06-03 17:51:07] 2025-06-03 15:45:19,512 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 17:51:07] 2025-06-03 15:45:20,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22732784666432)>', '<ExcThread(monitor, started 22732532029184)>']
[2025-06-03 17:51:07] 2025-06-03 15:45:20,519 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 17:51:07] 2025-06-03 15:45:20,519 | INFO     | [monitor] control thread has ended
[2025-06-03 17:51:07] 2025-06-03 15:45:25,027 | INFO     | all workflow threads have been joined
[2025-06-03 17:51:07] 2025-06-03 15:45:25,028 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 17:51:07] 2025-06-03 15:45:25,028 | INFO     | traces error code: 0
[2025-06-03 17:51:07] 2025-06-03 15:45:25,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 17:51:07] 2025-06-03 15:45:25,168 [wrapper] ==== pilot stdout END ====
[2025-06-03 17:51:07] 2025-06-03 15:45:25,171 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 17:51:07] 2025-06-03 15:45:25,173 [wrapper] pilotpid: 1980655
[2025-06-03 17:51:07] 2025-06-03 15:45:25,175 [wrapper] Pilot exit status: 0
[2025-06-03 17:51:07] 2025-06-03 15:45:25,185 [wrapper] pandaids: 6667820883
[2025-06-03 17:51:07] 2025-06-03 15:45:25,233 [wrapper] cleanup supervisor_pilot 2218955 1980656
[2025-06-03 17:51:07] 2025-06-03 15:45:25,236 [wrapper] Test setup, not cleaning
[2025-06-03 17:51:07] 2025-06-03 15:45:25,239 [wrapper] apfmon messages muted
[2025-06-03 17:51:07] 2025-06-03 15:45:25,241 [wrapper] ==== wrapper stdout END ====
[2025-06-03 17:51:07] 2025-06-03 15:45:25,244 [wrapper] ==== wrapper stderr END ====
[2025-06-03 17:51:07]  *** Error codes and diagnostics ***
[2025-06-03 17:51:07]     "exeErrorCode": 0,
[2025-06-03 17:51:07]     "exeErrorDiag": "",
[2025-06-03 17:51:07]     "pilotErrorCode": 0,
[2025-06-03 17:51:07]     "pilotErrorDiag": "",
[2025-06-03 17:51:07]  *** Listing of results directory ***
[2025-06-03 17:51:07] total 408480
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc    495897 May 28 01:30 pilot3.tar.gz
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc      5111 May 28 02:30 queuedata.json
[2025-06-03 17:51:07] -rwx------ 1 boinc boinc     37140 May 28 02:34 runpilot2-wrapper.sh
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc       100 Jun  3 13:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 17:51:07] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 13:40 run_atlas
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc       105 Jun  3 13:40 job.xml
[2025-06-03 17:51:07] -rw-r--r-- 2 boinc boinc 225059962 Jun  3 13:40 EVNT.44871834._002973.pool.root.1
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc      6419 Jun  3 13:40 init_data.xml
[2025-06-03 17:51:07] drwxrwx--x 2 boinc boinc      4096 Jun  3 13:40 shared
[2025-06-03 17:51:07] -rw-r--r-- 2 boinc boinc    508883 Jun  3 13:40 input.tar.gz
[2025-06-03 17:51:07] -rw-r--r-- 2 boinc boinc     15093 Jun  3 13:40 start_atlas.sh
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc         0 Jun  3 13:40 boinc_lockfile
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc      2559 Jun  3 13:40 pandaJob.out
[2025-06-03 17:51:07] -rw------- 1 boinc boinc    982666 Jun  3 13:40 agis_schedconf.cvmfs.json
[2025-06-03 17:51:07] drwx------ 4 boinc boinc      4096 Jun  3 13:40 pilot3
[2025-06-03 17:51:07] -rw------- 1 boinc boinc 185998321 Jun  3 17:44 HITS.44871837._075944.pool.root.1
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc       528 Jun  3 17:44 boinc_task_state.xml
[2025-06-03 17:51:07] -rw------- 1 boinc boinc        95 Jun  3 17:44 pilot_heartbeat.json
[2025-06-03 17:51:07] -rw------- 1 boinc boinc      1037 Jun  3 17:44 memory_monitor_summary.json
[2025-06-03 17:51:07] -rw------- 1 boinc boinc   1603667 Jun  3 17:44 agis_ddmendpoints.agis.ALL.json
[2025-06-03 17:51:07] -rw------- 1 boinc boinc    331513 Jun  3 17:45 log.44871837._075944.job.log.tgz.1
[2025-06-03 17:51:07] -rw------- 1 boinc boinc      7737 Jun  3 17:45 heartbeat.json
[2025-06-03 17:51:07] -rw------- 1 boinc boinc      4559 Jun  3 17:45 pilotlog.txt
[2025-06-03 17:51:07] -rw------- 1 boinc boinc   1366945 Jun  3 17:45 log.44871837._075944.job.log.1
[2025-06-03 17:51:07] -rw------- 1 boinc boinc       357 Jun  3 17:45 output.list
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc       620 Jun  3 17:45 runtime_log
[2025-06-03 17:51:07] -rw------- 1 boinc boinc   1720320 Jun  3 17:45 result.tar.gz
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc      9026 Jun  3 17:45 runtime_log.err
[2025-06-03 17:51:07] -rw------- 1 boinc boinc       664 Jun  3 17:45 TzCMDmhvJe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8oaKDmB0Xj1n.diag
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc        26 Jun  3 17:50 wrapper_checkpoint.txt
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc      8192 Jun  3 17:51 boinc_mmap_file
[2025-06-03 17:51:07] -rw-r--r-- 1 boinc boinc     20926 Jun  3 17:51 stderr.txt
[2025-06-03 17:51:07] HITS file was successfully produced:
[2025-06-03 17:51:07] -rw------- 1 boinc boinc 185998321 Jun  3 17:44 shared/HITS.pool.root.1
[2025-06-03 17:51:07]  *** Contents of shared directory: ***
[2025-06-03 17:51:07] total 403628
[2025-06-03 17:51:07] -rw-r--r-- 2 boinc boinc 225059962 Jun  3 13:40 ATLAS.root_0
[2025-06-03 17:51:07] -rw-r--r-- 2 boinc boinc    508883 Jun  3 13:40 input.tar.gz
[2025-06-03 17:51:07] -rw-r--r-- 2 boinc boinc     15093 Jun  3 13:40 start_atlas.sh
[2025-06-03 17:51:07] -rw------- 1 boinc boinc 185998321 Jun  3 17:44 HITS.pool.root.1
[2025-06-03 17:51:07] -rw------- 1 boinc boinc   1720320 Jun  3 17:45 result.tar.gz
17:51:09 (1976986): run_atlas exited; CPU time 56869.881512
17:51:09 (1976986): called boinc_finish(0)

</stderr_txt>
]]>

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