Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-28 19:30:26 (7249): Detected: vboxwrapper 26206
2025-05-28 19:30:26 (7249): Detected: BOINC client v8.0.2
2025-05-28 19:30:26 (7249): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-28 19:30:26 (7249): Successfully copied 'init_data.xml' to the shared directory.
2025-05-28 19:30:26 (7249): Create VM. (boinc_f92f6014b35718a0, slot#0)
2025-05-28 19:30:27 (7249): Setting Memory Size for VM. (4300MB)
2025-05-28 19:30:27 (7249): Setting CPU Count for VM. (3)
2025-05-28 19:30:27 (7249): Setting Chipset Options for VM.
2025-05-28 19:30:27 (7249): Setting Graphics Controller Options for VM.
2025-05-28 19:30:27 (7249): Setting Boot Options for VM.
2025-05-28 19:30:27 (7249): Setting Network Configuration for NAT.
2025-05-28 19:30:27 (7249): Enabling VM Network Access.
2025-05-28 19:30:27 (7249): Disabling USB Support for VM.
2025-05-28 19:30:27 (7249): Disabling COM Port Support for VM.
2025-05-28 19:30:27 (7249): Disabling LPT Port Support for VM.
2025-05-28 19:30:27 (7249): Disabling Audio Support for VM.
2025-05-28 19:30:27 (7249): Disabling Clipboard Support for VM.
2025-05-28 19:30:28 (7249): Disabling Drag and Drop Support for VM.
2025-05-28 19:30:28 (7249): Adding storage controller(s) to VM.
2025-05-28 19:30:28 (7249): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-28 19:30:29 (7249): Adding VirtualBox Guest Additions to VM.
2025-05-28 19:30:29 (7249): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-28 19:30:29 (7249): forwarding host port 58487 to guest port 80
2025-05-28 19:30:29 (7249): Enabling remote desktop for VM.
2025-05-28 19:30:30 (7249): Required extension pack not installed, remote desktop not enabled.
2025-05-28 19:30:30 (7249): Enabling shared directory for VM.
2025-05-28 19:30:30 (7249): Starting VM using VBoxManage interface. (boinc_f92f6014b35718a0, slot#0)
2025-05-28 19:30:31 (7249): Successfully started VM. (PID = '7832')
2025-05-28 19:30:31 (7249): Reporting VM Process ID to BOINC.
2025-05-28 19:30:31 (7249): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-28 19:30:31 (7249): Guest Log: CPUID EDX: 0x178bfbff
2025-05-28 19:30:31 (7249): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-28 19:30:31 (7249): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-28 19:30:31 (7249): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-28 19:30:31 (7249): Detected: Web Application Enabled (http://localhost:58487)
2025-05-28 19:30:31 (7249): Preference change detected
2025-05-28 19:30:31 (7249): Setting CPU throttle for VM. (100%)
2025-05-28 19:30:31 (7249): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-28 19:30:33 (7249): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-28 19:30:33 (7249): Guest Log: BIOS: Booting from Hard Disk...
2025-05-28 19:30:36 (7249): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-28 19:30:36 (7249): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-28 19:30:36 (7249): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-28 19:30:42 (7249): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-28 19:30:42 (7249): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-28 19:30:48 (7249): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-28 19:30:48 (7249): Guest Log: 00:00:00.000224 main     Log opened 2025-05-29T02:30:47.197089000Z
2025-05-28 19:30:48 (7249): Guest Log: 00:00:00.000366 main     OS Product: Linux
2025-05-28 19:30:48 (7249): Guest Log: 00:00:00.000392 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-28 19:30:48 (7249): Guest Log: 00:00:00.000417 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-28 19:30:48 (7249): Guest Log: 00:00:00.000437 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-28 19:30:48 (7249): Guest Log: 00:00:00.000438 main     Process ID: 1294
2025-05-28 19:30:48 (7249): Guest Log: 00:00:00.000439 main     Package type: LINUX_64BITS_GENERIC
2025-05-28 19:30:48 (7249): Guest Log: 00:00:00.001526 main     5.2.32 r132073 started. Verbose level = 0
2025-05-28 19:30:49 (7249): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-28 19:30:49 (7249): Guest Log: [INFO] Mounting shared directory
2025-05-28 19:30:49 (7249): Guest Log: [INFO] Checking for init_data.xml
2025-05-28 19:30:53 (7249): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-28 19:30:53 (7249): Guest Log: [INFO] Detected branch: prod
2025-05-28 19:30:53 (7249): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-28 19:30:53 (7249): Guest Log: Copying input files
2025-05-28 19:30:54 (7249): Guest Log: Copied input files into RunAtlas.
2025-05-28 19:30:54 (7249): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-28 19:30:54 (7249): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-28 19:30:54 (7249): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-28 19:30:54 (7249): Guest Log: Further information can be found at the LHC@home message board.
2025-05-28 19:31:07 (7249): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-28 19:31:07 (7249): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-28 19:31:07 (7249): Guest Log: 2.6.3.0 1567 0 30156 146540 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-28 19:31:08 (7249): Guest Log: copied the webapp to /var/www
2025-05-28 19:31:08 (7249): Guest Log: ATHENA_PROC_NUMBER=3
2025-05-28 19:31:08 (7249): Guest Log: ATHENA_CORE_NUMBER=3
2025-05-28 19:31:08 (7249): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-28 19:31:08 (7249): Guest Log:  *** Starting ATLAS job. (PandaID=6667732098 taskID=44871837) ***
2025-05-28 21:09:32 (7249): Status Report: Elapsed Time: '6000.000000'
2025-05-28 21:09:32 (7249): Status Report: CPU Time: '15936.050000'
2025-05-28 22:48:32 (7249): Status Report: Elapsed Time: '12000.000000'
2025-05-28 22:48:32 (7249): Status Report: CPU Time: '33754.270000'
2025-05-28 23:13:48 (7249): Guest Log:  *** Job finished ***
2025-05-28 23:13:48 (7249): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:31,053 | INFO     | [job] control thread has finished
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:31,924 | INFO     | [data] copytool_out thread has finished
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:32,759 | INFO     | [data] queue_monitor thread has finished
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:34,151 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140534135859008)>', '<ExcThread(monitor, started 140533334796032)>']
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:35,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:35,140 | INFO     | [monitor] control thread has ended
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,157 | INFO     | all workflow threads have been joined
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,157 | INFO     | end of generic workflow (traces error code: 0)
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,157 | INFO     | traces error code: 0
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,300 [wrapper] ==== pilot stdout END ====
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,307 [wrapper] ==== wrapper stdout RESUME ====
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,315 [wrapper] pilotpid: 5933
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,321 [wrapper] Pilot exit status: 0
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,430 [wrapper] pandaids: 6667732098
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,475 [wrapper] cleanup supervisor_pilot 13675 5934
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,484 [wrapper] Test setup, not cleaning
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,492 [wrapper] apfmon messages muted
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,500 [wrapper] ==== wrapper stdout END ====
2025-05-28 23:13:48 (7249): Guest Log: 2025-05-29 06:13:39,509 [wrapper] ==== wrapper stderr END ====
2025-05-28 23:13:48 (7249): Guest Log:  *** Error codes and diagnostics ***
2025-05-28 23:13:48 (7249): Guest Log:     "exeErrorCode": 0,
2025-05-28 23:13:48 (7249): Guest Log:     "exeErrorDiag": "",
2025-05-28 23:13:48 (7249): Guest Log:     "pilotErrorCode": 0,
2025-05-28 23:13:48 (7249): Guest Log:     "pilotErrorDiag": "",
2025-05-28 23:13:48 (7249): Guest Log:  *** Listing of results directory ***
2025-05-28 23:13:48 (7249): Guest Log: total 198464
2025-05-28 23:13:48 (7249): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 23:30 pilot3.tar.gz
2025-05-28 23:13:48 (7249): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 28 00:10 queuedata.json
2025-05-28 23:13:48 (7249): Guest Log: -rwx------. 1 atlas atlas     37140 May 28 00:12 runpilot2-wrapper.sh
2025-05-28 23:13:48 (7249): Guest Log: -rw-r--r--. 1 atlas atlas     15093 May 29 02:30 start_atlas.sh
2025-05-28 23:13:48 (7249): Guest Log: -rw-r--r--. 1 atlas atlas      6713 May 29 02:30 init_data.xml
2025-05-28 23:13:48 (7249): Guest Log: -rw-r--r--. 1 atlas atlas    508879 May 29 02:30 input.tar.gz
2025-05-28 23:13:48 (7249): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 29 02:30 EVNT.44871834._002959.pool.root.1 -> /data/./ATLAS.root_0
2025-05-28 23:13:48 (7249): Guest Log: -rw-r--r--. 1 atlas atlas      2559 May 29 02:31 pandaJob.out
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas    993415 May 29 02:35 agis_schedconf.cvmfs.json
2025-05-28 23:13:48 (7249): Guest Log: drwx------. 4 atlas atlas      4096 May 29 02:35 pilot3
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas 196559868 May 29 06:12 HITS.44871837._075532.pool.root.1
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas      1036 May 29 06:13 memory_monitor_summary.json
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas   1603667 May 29 06:13 agis_ddmendpoints.agis.ALL.json
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas    310194 May 29 06:13 log.44871837._075532.job.log.tgz.1
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas        95 May 29 06:13 pilot_heartbeat.json
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas      7714 May 29 06:13 heartbeat.json
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas      4413 May 29 06:13 pilotlog.txt
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas   1137117 May 29 06:13 log.44871837._075532.job.log.1
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas       357 May 29 06:13 output.list
2025-05-28 23:13:48 (7249): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 29 06:13 runtime_log
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas   1464320 May 29 06:13 result.tar.gz
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas       658 May 29 06:13 S1uKDmiaJe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWkaKDm4bdman.diag
2025-05-28 23:13:48 (7249): Guest Log: -rw-r--r--. 1 atlas atlas      8586 May 29 06:13 runtime_log.err
2025-05-28 23:13:48 (7249): Guest Log: Looking for outputfile HITS.44871837._075532.pool.root.1
2025-05-28 23:13:48 (7249): Guest Log: HITS file was successfully produced
2025-05-28 23:13:48 (7249): Guest Log: -rw-------. 1 atlas atlas 196559868 May 29 06:12 /home/atlas/RunAtlas/HITS.44871837._075532.pool.root.1
2025-05-28 23:13:49 (7249): Guest Log: Successfully finished the ATLAS job!
2025-05-28 23:13:49 (7249): Guest Log: Copying the results back to the shared directory!
2025-05-28 23:13:49 (7249): Guest Log:  *** Contents of shared directory: ***
2025-05-28 23:13:49 (7249): Guest Log: total 221156
2025-05-28 23:13:49 (7249): Guest Log: -rw-r--r--. 1 root root 224460612 May 29 02:30 ATLAS.root_0
2025-05-28 23:13:49 (7249): Guest Log: -rw-r--r--. 1 root root      6713 May 29 02:30 init_data.xml
2025-05-28 23:13:49 (7249): Guest Log: -rw-r--r--. 1 root root    508879 May 29 02:30 input.tar.gz
2025-05-28 23:13:49 (7249): Guest Log: -rw-r--r--. 1 root root   1464320 May 29  2025 result.tar.gz
2025-05-28 23:13:49 (7249): Guest Log: -rw-r--r--. 1 root root     15093 May 29 02:30 start_atlas.sh
2025-05-28 23:13:49 (7249): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-28 23:13:49 (7249): VM Completion File Detected.
2025-05-28 23:13:49 (7249): Powering off VM.
2025-05-28 23:13:50 (7249): Successfully stopped VM.
2025-05-28 23:13:50 (7249): Deregistering VM. (boinc_f92f6014b35718a0, slot#0)
2025-05-28 23:13:50 (7249): Removing network bandwidth throttle group from VM.
2025-05-28 23:13:50 (7249): Removing VM from VirtualBox.
23:13:55 (7249): called boinc_finish(0)

</stderr_txt>
]]>

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