Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:35:39 (2309540): wrapper (7.7.26015): starting
18:35:39 (2309540): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 18:35:39] Arguments: --nthreads 4
[2025-06-06 18:35:39] Threads: 4
[2025-06-06 18:35:39] Checking for CVMFS
[2025-06-06 18:35:39] No cvmfs_config command found, will try listing directly
[2025-06-06 18:35:39] CVMFS is ok
[2025-06-06 18:35:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 18:35:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 18:35:39] Further information can be found at the LHC@home message board.
[2025-06-06 18:35:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 18:35:39] Checking for apptainer binary...
[2025-06-06 18:35:39] which: no apptainer in ((null))
[2025-06-06 18:35:39] apptainer is not installed, using version from CVMFS
[2025-06-06 18:35:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 18:35:39] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut31.grid.cesnet.cz
[2025-06-06 18:35:39] apptainer works
[2025-06-06 18:35:39] Set ATHENA_PROC_NUMBER=4
[2025-06-06 18:35:39] Set ATHENA_CORE_NUMBER=4
[2025-06-06 18:35:39] Starting ATLAS job with PandaID=6667731277
[2025-06-06 18:35:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 21:20:53]  *** The last 200 lines of the pilot log: ***
[2025-06-06 21:20:53] 2025-06-06 19:20:39,018 | INFO     | PID=2313513 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 21:20:53] 2025-06-06 19:20:39,018 | INFO     | .. there are 3 such processes running
[2025-06-06 21:20:53] 2025-06-06 19:20:40,641 | INFO     | monitor loop #748: job 0:6667731277 is in state 'finished'
[2025-06-06 21:20:53] 2025-06-06 19:20:40,641 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 21:20:53] 2025-06-06 19:20:41,272 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-06 21:20:53] 2025-06-06 19:20:41,272 | INFO     | using path: /scratch/boinc/var/slot8/slots/0/PanDA_Pilot-6667731277/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 21:20:53] 2025-06-06 19:20:41,273 | INFO     | extracted standard info from prmon json
[2025-06-06 21:20:53] 2025-06-06 19:20:41,273 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 21:20:53] 2025-06-06 19:20:41,273 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 21:20:53] 2025-06-06 19:20:41,273 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 21:20:53] 2025-06-06 19:20:41,273 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 21:20:53] 2025-06-06 19:20:41,275 | INFO     | fitting pss+swap vs Time
[2025-06-06 21:20:53] 2025-06-06 19:20:41,275 | INFO     | sum of square deviations: 1318277740.5
[2025-06-06 21:20:53] 2025-06-06 19:20:41,276 | INFO     | sum of deviations: -42091975119.0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,276 | INFO     | mean x: 1749232678.5
[2025-06-06 21:20:53] 2025-06-06 19:20:41,276 | INFO     | mean y: 2465410.2098765434
[2025-06-06 21:20:53] 2025-06-06 19:20:41,276 | INFO     | -- intersect: 55854624722.88829
[2025-06-06 21:20:53] 2025-06-06 19:20:41,276 | INFO     | intersect: 55854624722.88829
[2025-06-06 21:20:53] 2025-06-06 19:20:41,277 | INFO     | chi2: 1.5728397838539674
[2025-06-06 21:20:53] 2025-06-06 19:20:41,277 | INFO     | sum of square deviations: 1199940638.0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,277 | INFO     | sum of deviations: -39548960759.0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,277 | INFO     | mean x: 1749232526.0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,278 | INFO     | mean y: 2468688.4012738853
[2025-06-06 21:20:53] 2025-06-06 19:20:41,278 | INFO     | -- intersect: 57655594466.72869
[2025-06-06 21:20:53] 2025-06-06 19:20:41,278 | INFO     | intersect: 57655594466.72869
[2025-06-06 21:20:53] 2025-06-06 19:20:41,278 | INFO     | chi2: 1.5668706487677175
[2025-06-06 21:20:53] 2025-06-06 19:20:41,278 | INFO     | current chi2=1.5668706487677175 (change=0.37951323126018205 %)
[2025-06-06 21:20:53] 2025-06-06 19:20:41,278 | INFO     | right removable region: 156
[2025-06-06 21:20:53] 2025-06-06 19:20:41,278 | INFO     | sum of square deviations: 1199940638.0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,279 | INFO     | sum of deviations: -60186161851.0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,279 | INFO     | mean x: 1749232831.0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,279 | INFO     | mean y: 2488248.592356688
[2025-06-06 21:20:53] 2025-06-06 19:20:41,279 | INFO     | -- intersect: 87739837037.04878
[2025-06-06 21:20:53] 2025-06-06 19:20:41,279 | INFO     | intersect: 87739837037.04878
[2025-06-06 21:20:53] 2025-06-06 19:20:41,279 | INFO     | chi2: 0.26340552787094057
[2025-06-06 21:20:53] 2025-06-06 19:20:41,279 | INFO     | current chi2=0.26340552787094057 (change=83.25286970898512 %)
[2025-06-06 21:20:53] 2025-06-06 19:20:41,279 | INFO     | sum of square deviations: 1088905998.0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,280 | INFO     | sum of deviations: -56098686020.49999
[2025-06-06 21:20:53] 2025-06-06 19:20:41,280 | INFO     | mean x: 1749232983.5
[2025-06-06 21:20:53] 2025-06-06 19:20:41,280 | INFO     | mean y: 2482606.072368421
[2025-06-06 21:20:53] 2025-06-06 19:20:41,280 | INFO     | -- intersect: 90120153092.14214
[2025-06-06 21:20:53] 2025-06-06 19:20:41,280 | INFO     | intersect: 90120153092.14214
[2025-06-06 21:20:53] 2025-06-06 19:20:41,280 | INFO     | chi2: 0.25846820748460597
[2025-06-06 21:20:53] 2025-06-06 19:20:41,280 | INFO     | current chi2=0.25846820748460597 (change=1.8744179084782577 %)
[2025-06-06 21:20:53] 2025-06-06 19:20:41,281 | INFO     | left removable region: 20
[2025-06-06 21:20:53] 2025-06-06 19:20:41,281 | INFO     | sum of square deviations: 779958810.0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,281 | INFO     | sum of deviations: -42683007870.49999
[2025-06-06 21:20:53] 2025-06-06 19:20:41,281 | INFO     | mean x: 1749233105.5
[2025-06-06 21:20:53] 2025-06-06 19:20:41,281 | INFO     | mean y: 2470883.595588235
[2025-06-06 21:20:53] 2025-06-06 19:20:41,281 | INFO     | -- intersect: 95728718798.39975
[2025-06-06 21:20:53] 2025-06-06 19:20:41,281 | INFO     | intersect: 95728718798.39975
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | chi2: 0.2445188027480984
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | -- intersect: 95728718798.39975
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | current memory leak: -54.72 B/s (using 136 data points, chi2=0.24)
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | ..............................
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | . Timing measurements:
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | . get job = 0 s
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | . initial setup = 1 s
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | . payload setup = 4 s
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | . stage-in = 0 s
[2025-06-06 21:20:53] 2025-06-06 19:20:41,282 | INFO     | . payload execution = 9864 s
[2025-06-06 21:20:53] 2025-06-06 19:20:41,283 | INFO     | . stage-out = 0 s
[2025-06-06 21:20:53] 2025-06-06 19:20:41,283 | INFO     | . log creation = 0 s
[2025-06-06 21:20:53] 2025-06-06 19:20:41,283 | INFO     | ..............................
[2025-06-06 21:20:53] 2025-06-06 19:20:41,338 | INFO     | 
[2025-06-06 21:20:53] 2025-06-06 19:20:41,338 | INFO     | job summary report
[2025-06-06 21:20:53] 2025-06-06 19:20:41,338 | INFO     | --------------------------------------------------
[2025-06-06 21:20:53] 2025-06-06 19:20:41,338 | INFO     | PanDA job id: 6667731277
[2025-06-06 21:20:53] 2025-06-06 19:20:41,338 | INFO     | task id: 44871837
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | errors: (none)
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | pilot state: finished 
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | transexitcode: 0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | exeerrorcode: 0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | exeerrordiag: 
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | exitcode: 0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | exitmsg: OK
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | cpuconsumptiontime: 38063 s
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | nevents: 400
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | neventsw: 0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | pid: 2320397
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | pgrp: 2320397
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | corecount: 4
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | event service: False
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | sizes: {0: 2397396, 3: 2397602, 11: 2397630, 9872: 2426121, 9874: 2435082, 9877: 2435138, 9880: 2435436}
[2025-06-06 21:20:53] 2025-06-06 19:20:41,339 | INFO     | --------------------------------------------------
[2025-06-06 21:20:53] 2025-06-06 19:20:41,340 | INFO     | 
[2025-06-06 21:20:53] 2025-06-06 19:20:41,340 | INFO     | executing command: ls -lF /scratch/boinc/var/slot8/slots/0
[2025-06-06 21:20:53] 2025-06-06 19:20:41,353 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,353 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,353 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,353 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,353 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,353 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 21:20:53] 2025-06-06 19:20:41,354 | INFO     | job 6667731277 has completed (purged errors)
[2025-06-06 21:20:53] 2025-06-06 19:20:41,355 | INFO     | overall cleanup function is called
[2025-06-06 21:20:53] 2025-06-06 19:20:42,361 | INFO     | --- collectZombieJob: --- 10, [2320397]
[2025-06-06 21:20:53] 2025-06-06 19:20:42,361 | INFO     | zombie collector waiting for pid 2320397
[2025-06-06 21:20:53] 2025-06-06 19:20:42,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 21:20:53] 2025-06-06 19:20:42,362 | INFO     | collected zombie processes
[2025-06-06 21:20:53] 2025-06-06 19:20:42,362 | INFO     | will attempt to kill all subprocesses of pid=2320397
[2025-06-06 21:20:53] 2025-06-06 19:20:42,494 | INFO     | process IDs to be killed: [2320397] (in reverse order)
[2025-06-06 21:20:53] 2025-06-06 19:20:42,536 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 21:20:53] 2025-06-06 19:20:42,536 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 21:20:53] 2025-06-06 19:20:42,539 | INFO     | did not find any defunct processes belonging to 2320397
[2025-06-06 21:20:53] 2025-06-06 19:20:42,543 | INFO     | did not find any defunct processes belonging to 2320397
[2025-06-06 21:20:53] 2025-06-06 19:20:42,543 | INFO     | ready for new job
[2025-06-06 21:20:53] 2025-06-06 19:20:42,543 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 21:20:53] 2025-06-06 19:20:42,544 | INFO     | **************************************
[2025-06-06 21:20:53] 2025-06-06 19:20:42,544 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 21:20:53] 2025-06-06 19:20:42,544 | INFO     | **************************************
[2025-06-06 21:20:53] 2025-06-06 19:20:42,544 | INFO     | 
[2025-06-06 21:20:53] 2025-06-06 19:20:42,546 | INFO     | architecture information:
[2025-06-06 21:20:53] 2025-06-06 19:20:42,546 | INFO     | executing command: cat /etc/os-release
[2025-06-06 21:20:53] 2025-06-06 19:20:42,554 | INFO     | cat /etc/os-release:
[2025-06-06 21:20:53] NAME="CentOS Linux"
[2025-06-06 21:20:53] VERSION="7 (Core)"
[2025-06-06 21:20:53] ID="centos"
[2025-06-06 21:20:53] ID_LIKE="rhel fedora"
[2025-06-06 21:20:53] VERSION_ID="7"
[2025-06-06 21:20:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 21:20:53] ANSI_COLOR="0;31"
[2025-06-06 21:20:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 21:20:53] HOME_URL="https://www.centos.org/"
[2025-06-06 21:20:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 21:20:53] 
[2025-06-06 21:20:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 21:20:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 21:20:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 21:20:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 21:20:53] 
[2025-06-06 21:20:53] 2025-06-06 19:20:42,554 | INFO     | **************************************
[2025-06-06 21:20:53] 2025-06-06 19:20:43,057 | INFO     | executing command: df -mP /scratch/boinc/var/slot8/slots/0
[2025-06-06 21:20:53] 2025-06-06 19:20:43,066 | INFO     | sufficient remaining disk space (1688839651328 B)
[2025-06-06 21:20:53] 2025-06-06 19:20:43,066 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 21:20:53] 2025-06-06 19:20:43,066 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 21:20:53] 2025-06-06 19:20:43,066 | INFO     | update_server=False
[2025-06-06 21:20:53] 2025-06-06 19:20:43,066 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 21:20:53] 2025-06-06 19:20:43,067 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 21:20:53] 2025-06-06 19:20:43,067 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 21:20:53] 2025-06-06 19:20:43,067 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 21:20:53] 2025-06-06 19:20:43,067 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 21:20:53] 2025-06-06 19:20:43,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 21:20:53] 2025-06-06 19:20:43,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 21:20:53] 2025-06-06 19:20:43,143 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-06-06 21:20:53] 2025-06-06 19:20:43,143 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-06-06 21:20:53] 2025-06-06 19:20:43,143 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 21:20:53] 2025-06-06 19:20:43,143 | INFO     | will abort loop
[2025-06-06 21:20:53] 2025-06-06 19:20:43,194 | INFO     | all job control threads have been joined
[2025-06-06 21:20:53] 2025-06-06 19:20:43,588 | INFO     | all data control threads have been joined
[2025-06-06 21:20:53] 2025-06-06 19:20:44,072 | INFO     | [job] retrieve thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,073 | INFO     | [job] queue monitor thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,136 | INFO     | [payload] failed_post thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,149 | INFO     | [job] job monitor thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,195 | INFO     | [job] control thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,221 | INFO     | all payload control threads have been joined
[2025-06-06 21:20:53] 2025-06-06 19:20:44,294 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 21:20:53] 2025-06-06 19:20:44,495 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,554 | INFO     | [data] copytool_in thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,592 | INFO     | [data] control thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,644 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,908 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:44,998 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:45,073 | INFO     | [data] copytool_out thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:45,225 | INFO     | [payload] control thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:45,249 | INFO     | [payload] validate_post thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:45,437 | INFO     | [job] validate thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:46,014 [wrapper] supervise_pilot (15 min periods counter: 12)
[2025-06-06 21:20:53] 2025-06-06 19:20:48,300 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 21:20:53] 2025-06-06 19:20:48,701 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22688452347712)>', '<ExcThread(monitor, started 22688202434304)>']
[2025-06-06 21:20:53] 2025-06-06 19:20:49,098 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 21:20:53] 2025-06-06 19:20:49,098 | INFO     | [monitor] control thread has ended
[2025-06-06 21:20:53] 2025-06-06 19:20:53,726 | INFO     | all workflow threads have been joined
[2025-06-06 21:20:53] 2025-06-06 19:20:53,726 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 21:20:53] 2025-06-06 19:20:53,727 | INFO     | traces error code: 0
[2025-06-06 21:20:53] 2025-06-06 19:20:53,727 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 21:20:53] 2025-06-06 19:20:53,800 [wrapper] ==== pilot stdout END ====
[2025-06-06 21:20:53] 2025-06-06 19:20:53,802 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 21:20:53] 2025-06-06 19:20:53,804 [wrapper] pilotpid: 2313513
[2025-06-06 21:20:53] 2025-06-06 19:20:53,806 [wrapper] Pilot exit status: 0
[2025-06-06 21:20:53] 2025-06-06 19:20:53,812 [wrapper] pandaids: 6667731277
[2025-06-06 21:20:53] 2025-06-06 19:20:53,836 [wrapper] cleanup supervisor_pilot 2446482 2313514
[2025-06-06 21:20:53] 2025-06-06 19:20:53,838 [wrapper] Test setup, not cleaning
[2025-06-06 21:20:53] 2025-06-06 19:20:53,840 [wrapper] apfmon messages muted
[2025-06-06 21:20:53] 2025-06-06 19:20:53,841 [wrapper] ==== wrapper stdout END ====
[2025-06-06 21:20:53] 2025-06-06 19:20:53,843 [wrapper] ==== wrapper stderr END ====
[2025-06-06 21:20:53]  *** Error codes and diagnostics ***
[2025-06-06 21:20:53]     "exeErrorCode": 0,
[2025-06-06 21:20:53]     "exeErrorDiag": "",
[2025-06-06 21:20:53]     "pilotErrorCode": 0,
[2025-06-06 21:20:53]     "pilotErrorDiag": "",
[2025-06-06 21:20:53]  *** Listing of results directory ***
[2025-06-06 21:20:53] total 531120
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc    495897 May 28 01:30 pilot3.tar.gz
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc      5111 May 28 01:45 queuedata.json
[2025-06-06 21:20:53] -rwx------ 1 boinc boinc     37140 May 28 01:49 runpilot2-wrapper.sh
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc       100 Jun  2 08:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 21:20:53] -rwxr-xr-x 1 boinc boinc      7986 Jun  2 08:17 run_atlas
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc       105 Jun  2 08:17 job.xml
[2025-06-06 21:20:53] -rw------- 2 boinc boinc  33488896 Jun  2 08:21 copy_tsfaHg
[2025-06-06 21:20:53] -rw------- 2 boinc boinc  78577664 Jun  3 04:21 copy_XE8TSc
[2025-06-06 21:20:53] -rw------- 2 boinc boinc   1048576 Jun  5 17:05 copy_OJ395K
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc      6418 Jun  6 18:35 init_data.xml
[2025-06-06 21:20:53] -rw-r--r-- 2 boinc boinc 223522908 Jun  6 18:35 EVNT.44871834._002950.pool.root.1
[2025-06-06 21:20:53] drwxrwx--x 2 boinc boinc      4096 Jun  6 18:35 shared
[2025-06-06 21:20:53] -rw-r--r-- 2 boinc boinc    508887 Jun  6 18:35 input.tar.gz
[2025-06-06 21:20:53] -rw-r--r-- 2 boinc boinc     15093 Jun  6 18:35 start_atlas.sh
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc         0 Jun  6 18:35 boinc_lockfile
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc      2556 Jun  6 18:35 pandaJob.out
[2025-06-06 21:20:53] -rw------- 1 boinc boinc    985748 Jun  6 18:35 agis_schedconf.cvmfs.json
[2025-06-06 21:20:53] -rw------- 1 boinc boinc   1598969 Jun  6 18:35 agis_ddmendpoints.agis.ALL.json
[2025-06-06 21:20:53] drwx------ 4 boinc boinc      4096 Jun  6 18:35 pilot3
[2025-06-06 21:20:53] -rw------- 1 boinc boinc 200923206 Jun  6 21:20 HITS.44871837._075288.pool.root.1
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc       529 Jun  6 21:20 boinc_task_state.xml
[2025-06-06 21:20:53] -rw------- 1 boinc boinc        95 Jun  6 21:20 pilot_heartbeat.json
[2025-06-06 21:20:53] -rw------- 1 boinc boinc      1028 Jun  6 21:20 memory_monitor_summary.json
[2025-06-06 21:20:53] -rw------- 1 boinc boinc    281184 Jun  6 21:20 log.44871837._075288.job.log.tgz.1
[2025-06-06 21:20:53] -rw------- 1 boinc boinc      7720 Jun  6 21:20 heartbeat.json
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc      8192 Jun  6 21:20 boinc_mmap_file
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc        27 Jun  6 21:20 wrapper_checkpoint.txt
[2025-06-06 21:20:53] -rw------- 1 boinc boinc      4672 Jun  6 21:20 pilotlog.txt
[2025-06-06 21:20:53] -rw------- 1 boinc boinc    950981 Jun  6 21:20 log.44871837._075288.job.log.1
[2025-06-06 21:20:53] -rw------- 1 boinc boinc       357 Jun  6 21:20 output.list
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc       620 Jun  6 21:20 runtime_log
[2025-06-06 21:20:53] -rw------- 1 boinc boinc   1249280 Jun  6 21:20 result.tar.gz
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc      9010 Jun  6 21:20 runtime_log.err
[2025-06-06 21:20:53] -rw------- 1 boinc boinc       661 Jun  6 21:20 ZJ2MDmwDJe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUhaKDmo2i0Nn.diag
[2025-06-06 21:20:53] -rw-r--r-- 1 boinc boinc     20887 Jun  6 21:20 stderr.txt
[2025-06-06 21:20:53] HITS file was successfully produced:
[2025-06-06 21:20:53] -rw------- 1 boinc boinc 200923206 Jun  6 21:20 shared/HITS.pool.root.1
[2025-06-06 21:20:53]  *** Contents of shared directory: ***
[2025-06-06 21:20:53] total 526720
[2025-06-06 21:20:53] -rw------- 2 boinc boinc  33488896 Jun  2 08:21 copy_tsfaHg
[2025-06-06 21:20:53] -rw------- 2 boinc boinc  78577664 Jun  3 04:21 copy_XE8TSc
[2025-06-06 21:20:53] -rw------- 2 boinc boinc   1048576 Jun  5 17:05 copy_OJ395K
[2025-06-06 21:20:53] -rw-r--r-- 2 boinc boinc 223522908 Jun  6 18:35 ATLAS.root_0
[2025-06-06 21:20:53] -rw-r--r-- 2 boinc boinc    508887 Jun  6 18:35 input.tar.gz
[2025-06-06 21:20:53] -rw-r--r-- 2 boinc boinc     15093 Jun  6 18:35 start_atlas.sh
[2025-06-06 21:20:53] -rw------- 1 boinc boinc 200923206 Jun  6 21:20 HITS.pool.root.1
[2025-06-06 21:20:53] -rw------- 1 boinc boinc   1249280 Jun  6 21:20 result.tar.gz
21:20:55 (2309540): run_atlas exited; CPU time 38223.676042
21:20:55 (2309540): called boinc_finish(0)

</stderr_txt>
]]>

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