Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:01:39 (337): wrapper (7.7.26015): starting
17:01:39 (337): wrapper: running run_atlas (--nthreads 8)
[2025-05-28 17:01:39] Arguments: --nthreads 8
[2025-05-28 17:01:39] Threads: 8
[2025-05-28 17:01:39] Checking for CVMFS
[2025-05-28 17:01:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 17:01:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 17:01:39] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 17:01:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 17:01:39] 2.11.2.0 16148 23288 92456 146522 0 69 25159658 25165825 2292 130560 0 13355670 99.780 14577506 1745 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-28 17:01:39] CVMFS is ok
[2025-05-28 17:01:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 17:01:39] Checking for apptainer binary...
[2025-05-28 17:01:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 17:01:39] Running /usr/bin/apptainer --version
[2025-05-28 17:01:39] apptainer version 1.3.2-1.el7
[2025-05-28 17:01:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 17:01:41] cg-vwn372.simple-grid.lan
[2025-05-28 17:01:41] apptainer works
[2025-05-28 17:01:41] Set ATHENA_PROC_NUMBER=8
[2025-05-28 17:01:41] Set ATHENA_CORE_NUMBER=8
[2025-05-28 17:01:41] Starting ATLAS job with PandaID=6667667513
[2025-05-28 17:01:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 21:41:59]  *** The last 200 lines of the pilot log: ***
[2025-05-28 21:42:00] 2025-05-28 19:29:22,855 | INFO     | -- intersect: -2959225493.7770286
[2025-05-28 21:42:00] 2025-05-28 19:29:22,855 | INFO     | intersect: -2959225493.7770286
[2025-05-28 21:42:00] 2025-05-28 19:29:22,855 | INFO     | chi2: 0.0008332927234779678
[2025-05-28 21:42:00] 2025-05-28 19:29:22,855 | INFO     | current chi2=0.0008332927234779678 (change=32.129560398684134 %)
[2025-05-28 21:42:00] 2025-05-28 19:29:22,856 | INFO     | sum of square deviations: 3822136780.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,858 | INFO     | sum of deviations: 5920178404.999999
[2025-05-28 21:42:00] 2025-05-28 19:29:22,858 | INFO     | mean x: 1748453416.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,858 | INFO     | mean y: 2503898.242424242
[2025-05-28 21:42:00] 2025-05-28 19:29:22,858 | INFO     | -- intersect: -2705707961.080852
[2025-05-28 21:42:00] 2025-05-28 19:29:22,858 | INFO     | intersect: -2705707961.080852
[2025-05-28 21:42:00] 2025-05-28 19:29:22,858 | INFO     | chi2: 0.0006235384578991315
[2025-05-28 21:42:00] 2025-05-28 19:29:22,859 | INFO     | current chi2=0.0006235384578991315 (change=25.17173853425377 %)
[2025-05-28 21:42:00] 2025-05-28 19:29:22,859 | INFO     | sum of square deviations: 3579276412.5
[2025-05-28 21:42:00] 2025-05-28 19:29:22,861 | INFO     | sum of deviations: 4990737570.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,861 | INFO     | mean x: 1748453568.5
[2025-05-28 21:42:00] 2025-05-28 19:29:22,861 | INFO     | mean y: 2504481.8761061947
[2025-05-28 21:42:00] 2025-05-28 19:29:22,861 | INFO     | -- intersect: -2435438808.3484845
[2025-05-28 21:42:00] 2025-05-28 19:29:22,861 | INFO     | intersect: -2435438808.3484845
[2025-05-28 21:42:00] 2025-05-28 19:29:22,862 | INFO     | chi2: 0.0004071628700587253
[2025-05-28 21:42:00] 2025-05-28 19:29:22,862 | INFO     | current chi2=0.0004071628700587253 (change=34.70124177575728 %)
[2025-05-28 21:42:00] 2025-05-28 19:29:22,862 | INFO     | sum of square deviations: 3346927870.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,864 | INFO     | sum of deviations: 4105827832.9999995
[2025-05-28 21:42:00] 2025-05-28 19:29:22,864 | INFO     | mean x: 1748453721.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,864 | INFO     | mean y: 2505062.556561086
[2025-05-28 21:42:00] 2025-05-28 19:29:22,864 | INFO     | -- intersect: -2142402216.96429
[2025-05-28 21:42:00] 2025-05-28 19:29:22,864 | INFO     | intersect: -2142402216.96429
[2025-05-28 21:42:00] 2025-05-28 19:29:22,865 | INFO     | chi2: 0.00017416975377624832
[2025-05-28 21:42:00] 2025-05-28 19:29:22,865 | INFO     | current chi2=0.00017416975377624832 (change=57.223566640266654 %)
[2025-05-28 21:42:00] 2025-05-28 19:29:22,865 | INFO     | sum of square deviations: 3124858590.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,867 | INFO     | sum of deviations: 3574658926.0000005
[2025-05-28 21:42:00] 2025-05-28 19:29:22,867 | INFO     | mean x: 1748453873.5
[2025-05-28 21:42:00] 2025-05-28 19:29:22,867 | INFO     | mean y: 2505426.6203703703
[2025-05-28 21:42:00] 2025-05-28 19:29:22,868 | INFO     | -- intersect: -1997625480.297261
[2025-05-28 21:42:00] 2025-05-28 19:29:22,868 | INFO     | intersect: -1997625480.297261
[2025-05-28 21:42:00] 2025-05-28 19:29:22,868 | INFO     | chi2: 0.00011271894029115989
[2025-05-28 21:42:00] 2025-05-28 19:29:22,868 | INFO     | current chi2=0.00011271894029115989 (change=35.28213834649661 %)
[2025-05-28 21:42:00] 2025-05-28 19:29:22,869 | INFO     | sum of square deviations: 2912836010.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,870 | INFO     | sum of deviations: 3171861835.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,871 | INFO     | mean x: 1748454026.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,871 | INFO     | mean y: 2505716.0710900472
[2025-05-28 21:42:00] 2025-05-28 19:29:22,871 | INFO     | -- intersect: -1901430714.3637624
[2025-05-28 21:42:00] 2025-05-28 19:29:22,871 | INFO     | intersect: -1901430714.3637624
[2025-05-28 21:42:00] 2025-05-28 19:29:22,871 | INFO     | chi2: 9.129384570324601e-05
[2025-05-28 21:42:00] 2025-05-28 19:29:22,871 | INFO     | current chi2=9.129384570324601e-05 (change=19.007537271528243 %)
[2025-05-28 21:42:00] 2025-05-28 19:29:22,872 | INFO     | left removable region: 100
[2025-05-28 21:42:00] 2025-05-28 19:29:22,872 | INFO     | sum of square deviations: 1154663510.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,873 | INFO     | sum of deviations: 942399980.0000002
[2025-05-28 21:42:00] 2025-05-28 19:29:22,873 | INFO     | mean x: 1748455368.0
[2025-05-28 21:42:00] 2025-05-28 19:29:22,873 | INFO     | mean y: 2507647.4258064516
[2025-05-28 21:42:00] 2025-05-28 19:29:22,873 | INFO     | -- intersect: -1424526540.0788224
[2025-05-28 21:42:00] 2025-05-28 19:29:22,874 | INFO     | intersect: -1424526540.0788224
[2025-05-28 21:42:00] 2025-05-28 19:29:22,874 | INFO     | chi2: 4.647552303667243e-05
[2025-05-28 21:42:00] 2025-05-28 19:29:22,874 | INFO     | -- intersect: -1424526540.0788224
[2025-05-28 21:42:00] 2025-05-28 19:29:22,874 | INFO     | current memory leak: 0.82 B/s (using 155 data points, chi2=0.00)
[2025-05-28 21:42:00] 2025-05-28 19:29:22,875 | INFO     | ..............................
[2025-05-28 21:42:00] 2025-05-28 19:29:22,875 | INFO     | . Timing measurements:
[2025-05-28 21:42:00] 2025-05-28 19:29:22,875 | INFO     | . get job = 0 s
[2025-05-28 21:42:00] 2025-05-28 19:29:22,876 | INFO     | . initial setup = 2 s
[2025-05-28 21:42:00] 2025-05-28 19:29:22,876 | INFO     | . payload setup = 16 s
[2025-05-28 21:42:00] 2025-05-28 19:29:22,876 | INFO     | . stage-in = 0 s
[2025-05-28 21:42:00] 2025-05-28 19:29:22,876 | INFO     | . payload execution = 15919 s
[2025-05-28 21:42:00] 2025-05-28 19:29:22,876 | INFO     | . stage-out = 4 s
[2025-05-28 21:42:00] 2025-05-28 19:29:22,876 | INFO     | . log creation = 0 s
[2025-05-28 21:42:00] 2025-05-28 19:29:22,876 | INFO     | ..............................
[2025-05-28 21:42:00] 2025-05-28 19:29:23,159 | INFO     | 
[2025-05-28 21:42:00] 2025-05-28 19:29:23,159 | INFO     | job summary report
[2025-05-28 21:42:00] 2025-05-28 19:29:23,159 | INFO     | --------------------------------------------------
[2025-05-28 21:42:00] 2025-05-28 19:29:23,159 | INFO     | PanDA job id: 6667667513
[2025-05-28 21:42:00] 2025-05-28 19:29:23,159 | INFO     | task id: 44871837
[2025-05-28 21:42:00] 2025-05-28 19:29:23,159 | INFO     | errors: (none)
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | pilot state: finished 
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | transexitcode: 0
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | exeerrorcode: 0
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | exeerrordiag: 
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | exitcode: 0
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | exitmsg: OK
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | cpuconsumptiontime: 71049 s
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | nevents: 400
[2025-05-28 21:42:00] 2025-05-28 19:29:23,160 | INFO     | neventsw: 0
[2025-05-28 21:42:00] 2025-05-28 19:29:23,161 | INFO     | pid: 15965
[2025-05-28 21:42:00] 2025-05-28 19:29:23,161 | INFO     | pgrp: 15965
[2025-05-28 21:42:00] 2025-05-28 19:29:23,161 | INFO     | corecount: 8
[2025-05-28 21:42:00] 2025-05-28 19:29:23,161 | INFO     | event service: False
[2025-05-28 21:42:00] 2025-05-28 19:29:23,161 | INFO     | sizes: {0: 2405235, 1: 2405235, 9: 2405469, 12: 2405497, 15939: 2436169, 15944: 2445296, 16021: 2445410}
[2025-05-28 21:42:00] 2025-05-28 19:29:23,161 | INFO     | --------------------------------------------------
[2025-05-28 21:42:00] 2025-05-28 19:29:23,161 | INFO     | 
[2025-05-28 21:42:00] 2025-05-28 19:29:23,161 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-05-28 21:42:00] 2025-05-28 19:29:23,188 | INFO     | PID=4031 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-05-28 21:42:00] 2025-05-28 19:29:23,188 | INFO     | .. there are 9 such processes running
[2025-05-28 21:42:00] 2025-05-28 19:29:23,345 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,345 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,345 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,345 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,345 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,345 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,345 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,346 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,346 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,346 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,346 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,346 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,346 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,346 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,346 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,346 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,347 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,347 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 21:42:00] 2025-05-28 19:29:23,347 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,347 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 21:42:00] 2025-05-28 19:29:23,347 | INFO     | job 6667667513 has completed (purged errors)
[2025-05-28 21:42:00] 2025-05-28 19:29:23,347 | INFO     | overall cleanup function is called
[2025-05-28 21:42:00] 2025-05-28 19:29:24,357 | INFO     | --- collectZombieJob: --- 10, [15965]
[2025-05-28 21:42:00] 2025-05-28 19:29:24,357 | INFO     | zombie collector waiting for pid 15965
[2025-05-28 21:42:00] 2025-05-28 19:29:24,357 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 21:42:00] 2025-05-28 19:29:24,357 | INFO     | collected zombie processes
[2025-05-28 21:42:00] 2025-05-28 19:29:24,357 | INFO     | will attempt to kill all subprocesses of pid=15965
[2025-05-28 21:42:00] 2025-05-28 19:29:24,483 | INFO     | process IDs to be killed: [15965] (in reverse order)
[2025-05-28 21:42:00] 2025-05-28 19:29:24,821 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 21:42:00] 2025-05-28 19:29:24,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 21:42:00] 2025-05-28 19:29:24,824 | INFO     | did not find any defunct processes belonging to 15965
[2025-05-28 21:42:00] 2025-05-28 19:29:24,828 | INFO     | did not find any defunct processes belonging to 15965
[2025-05-28 21:42:00] 2025-05-28 19:29:24,828 | INFO     | ready for new job
[2025-05-28 21:42:00] 2025-05-28 19:29:24,828 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 21:42:00] 2025-05-28 19:29:24,830 | INFO     | **************************************
[2025-05-28 21:42:00] 2025-05-28 19:29:24,830 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 21:42:00] 2025-05-28 19:29:24,831 | INFO     | **************************************
[2025-05-28 21:42:00] 2025-05-28 19:29:24,831 | INFO     | 
[2025-05-28 21:42:00] 2025-05-28 19:29:24,831 | INFO     | pilot is running in a VM
[2025-05-28 21:42:00] 2025-05-28 19:29:24,831 | INFO     | architecture information:
[2025-05-28 21:42:00] 2025-05-28 19:29:24,832 | INFO     | executing command: cat /etc/os-release
[2025-05-28 21:42:00] 2025-05-28 19:29:24,997 | INFO     | cat /etc/os-release:
[2025-05-28 21:42:00] NAME="CentOS Linux"
[2025-05-28 21:42:00] VERSION="7 (Core)"
[2025-05-28 21:42:00] ID="centos"
[2025-05-28 21:42:00] ID_LIKE="rhel fedora"
[2025-05-28 21:42:00] VERSION_ID="7"
[2025-05-28 21:42:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 21:42:00] ANSI_COLOR="0;31"
[2025-05-28 21:42:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 21:42:00] HOME_URL="https://www.centos.org/"
[2025-05-28 21:42:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 21:42:00] 
[2025-05-28 21:42:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 21:42:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 21:42:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 21:42:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 21:42:00] 
[2025-05-28 21:42:00] 2025-05-28 19:29:24,998 | INFO     | **************************************
[2025-05-28 21:42:00] 2025-05-28 19:29:25,501 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-05-28 21:42:00] 2025-05-28 19:29:25,658 | INFO     | sufficient remaining disk space (496651730944 B)
[2025-05-28 21:42:00] 2025-05-28 19:29:25,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 21:42:00] 2025-05-28 19:29:25,658 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 21:42:00] 2025-05-28 19:29:25,658 | INFO     | update_server=False
[2025-05-28 21:42:00] 2025-05-28 19:29:25,659 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 21:42:00] 2025-05-28 19:29:25,660 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 21:42:00] 2025-05-28 19:29:25,660 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 21:42:00] 2025-05-28 19:29:25,660 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 21:42:00] 2025-05-28 19:29:25,660 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 21:42:00] 2025-05-28 19:29:25,685 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 21:42:00] 2025-05-28 19:29:25,685 | INFO     | aborting loop
[2025-05-28 21:42:00] 2025-05-28 19:29:25,715 | INFO     | all job control threads have been joined
[2025-05-28 21:42:00] 2025-05-28 19:29:26,351 | INFO     | all data control threads have been joined
[2025-05-28 21:42:00] 2025-05-28 19:29:26,665 | INFO     | [job] retrieve thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:26,691 | INFO     | [job] job monitor thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:26,721 | INFO     | [job] control thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:26,910 | INFO     | [data] copytool_in thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:26,952 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:26,994 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 21:42:00] 2025-05-28 19:29:27,024 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:27,169 | INFO     | all payload control threads have been joined
[2025-05-28 21:42:00] 2025-05-28 19:29:27,287 | INFO     | [payload] validate_post thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:27,347 | INFO     | [payload] failed_post thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:27,357 | INFO     | [data] control thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:27,615 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:27,743 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:28,124 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 21:42:00] 2025-05-28 19:29:28,166 | INFO     | [job] validate thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:28,176 | INFO     | [payload] control thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:29,001 | INFO     | [data] copytool_out thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:29,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 21:42:00] 2025-05-28 19:29:29,130 | INFO     | [job] queue monitor thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:33,051 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 21:42:00] 2025-05-28 19:29:34,248 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139941394687808)>', '<ExcThread(monitor, started 139940822243072)>']
[2025-05-28 21:42:00] 2025-05-28 19:29:34,714 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 21:42:00] 2025-05-28 19:29:34,714 | INFO     | [monitor] control thread has ended
[2025-05-28 21:42:00] 2025-05-28 19:29:39,274 | INFO     | all workflow threads have been joined
[2025-05-28 21:42:00] 2025-05-28 19:29:39,274 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 21:42:00] 2025-05-28 19:29:39,274 | INFO     | traces error code: 0
[2025-05-28 21:42:00] 2025-05-28 19:29:39,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 21:42:00] 2025-05-28 19:29:39,576 [wrapper] ==== pilot stdout END ====
[2025-05-28 21:42:00] 2025-05-28 19:29:39,649 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 21:42:00] 2025-05-28 19:29:39,711 [wrapper] pilotpid: 4031
[2025-05-28 21:42:00] 2025-05-28 19:29:39,786 [wrapper] Pilot exit status: 0
[2025-05-28 21:42:00] 2025-05-28 19:29:40,156 [wrapper] pandaids: 6667667513
[2025-05-28 21:42:00] 2025-05-28 19:29:41,101 [wrapper] cleanup supervisor_pilot 26663 4032
[2025-05-28 21:42:00] 2025-05-28 19:29:41,216 [wrapper] Test setup, not cleaning
[2025-05-28 21:42:00] 2025-05-28 19:29:41,310 [wrapper] apfmon messages muted
[2025-05-28 21:42:00] 2025-05-28 19:29:41,439 [wrapper] ==== wrapper stdout END ====
[2025-05-28 21:42:00] 2025-05-28 19:29:41,515 [wrapper] ==== wrapper stderr END ====
[2025-05-28 21:42:00]  *** Error codes and diagnostics ***
[2025-05-28 21:42:00]     "exeErrorCode": 0,
[2025-05-28 21:42:00]     "exeErrorDiag": "",
[2025-05-28 21:42:00]     "pilotErrorCode": 0,
[2025-05-28 21:42:00]     "pilotErrorDiag": "",
[2025-05-28 21:42:00]  *** Listing of results directory ***
[2025-05-28 21:42:00] total 417360
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc    495897 May 27 23:39 pilot3.tar.gz
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc      5111 May 28 00:36 queuedata.json
[2025-05-28 21:42:00] -rwx------. 1 boinc boinc     37140 May 28 00:37 runpilot2-wrapper.sh
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc       100 May 28 17:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 21:42:00] -rwxr-xr-x. 1 boinc boinc      7986 May 28 17:01 run_atlas
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc       105 May 28 17:01 job.xml
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc      6372 May 28 17:01 init_data.xml
[2025-05-28 21:42:00] -rw-r--r--. 2 boinc boinc 222852386 May 28 17:01 EVNT.44871834._002918.pool.root.1
[2025-05-28 21:42:00] -rw-r--r--. 2 boinc boinc     15093 May 28 17:01 start_atlas.sh
[2025-05-28 21:42:00] drwxrwx--x. 2 boinc boinc        68 May 28 17:01 shared
[2025-05-28 21:42:00] -rw-r--r--. 2 boinc boinc    508883 May 28 17:01 input.tar.gz
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc         0 May 28 17:01 boinc_lockfile
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc      2559 May 28 17:01 pandaJob.out
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc    991941 May 28 17:01 agis_schedconf.cvmfs.json
[2025-05-28 21:42:00] drwx------. 4 boinc boinc      4096 May 28 17:01 pilot3
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc 197071221 May 28 21:27 HITS.44871837._074425.pool.root.1
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc       531 May 28 21:27 boinc_task_state.xml
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc      1033 May 28 21:27 memory_monitor_summary.json
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc   1603667 May 28 21:28 agis_ddmendpoints.agis.ALL.json
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc    398786 May 28 21:28 log.44871837._074425.job.log.tgz.1
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc        95 May 28 21:29 pilot_heartbeat.json
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc      7689 May 28 21:29 heartbeat.json
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc      4540 May 28 21:29 pilotlog.txt
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc   1411826 May 28 21:29 log.44871837._074425.job.log.1
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc       357 May 28 21:29 output.list
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc       620 May 28 21:29 runtime_log
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc   1832960 May 28 21:29 result.tar.gz
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc      8673 May 28 21:29 runtime_log.err
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc       656 May 28 21:29 7p8LDmh6He7n9Rq4apOajLDm4fhM0noT9bVof3QYDmqWSKDmiWe9cn.diag
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc      8192 May 28 21:41 boinc_mmap_file
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc        28 May 28 21:42 wrapper_checkpoint.txt
[2025-05-28 21:42:00] -rw-r--r--. 1 boinc boinc     20402 May 28 21:42 stderr.txt
[2025-05-28 21:42:00] HITS file was successfully produced:
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc 197071221 May 28 21:27 shared/HITS.pool.root.1
[2025-05-28 21:42:00]  *** Contents of shared directory: ***
[2025-05-28 21:42:00] total 412396
[2025-05-28 21:42:00] -rw-r--r--. 2 boinc boinc 222852386 May 28 17:01 ATLAS.root_0
[2025-05-28 21:42:00] -rw-r--r--. 2 boinc boinc     15093 May 28 17:01 start_atlas.sh
[2025-05-28 21:42:00] -rw-r--r--. 2 boinc boinc    508883 May 28 17:01 input.tar.gz
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc 197071221 May 28 21:27 HITS.pool.root.1
[2025-05-28 21:42:00] -rw-------. 1 boinc boinc   1832960 May 28 21:29 result.tar.gz
21:42:02 (337): run_atlas exited; CPU time 71210.241742
21:42:02 (337): called boinc_finish(0)

</stderr_txt>
]]>

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