Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:24:19 (1715628): wrapper (7.7.26015): starting
18:24:19 (1715628): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 18:24:19] Arguments: --nthreads 4
[2025-06-06 18:24:19] Threads: 4
[2025-06-06 18:24:19] Checking for CVMFS
[2025-06-06 18:24:19] No cvmfs_config command found, will try listing directly
[2025-06-06 18:24:19] CVMFS is ok
[2025-06-06 18:24:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 18:24:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 18:24:19] Further information can be found at the LHC@home message board.
[2025-06-06 18:24:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 18:24:19] Checking for apptainer binary...
[2025-06-06 18:24:19] which: no apptainer in ((null))
[2025-06-06 18:24:19] apptainer is not installed, using version from CVMFS
[2025-06-06 18:24:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 18:24:20] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-06-06 18:24:20] apptainer works
[2025-06-06 18:24:20] Set ATHENA_PROC_NUMBER=4
[2025-06-06 18:24:20] Set ATHENA_CORE_NUMBER=4
[2025-06-06 18:24:20] Starting ATLAS job with PandaID=6667729942
[2025-06-06 18:24:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:35:51 (1788087): wrapper (7.7.26015): starting
19:35:51 (1788087): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 19:35:51] Arguments: --nthreads 4
[2025-06-06 19:35:51] Threads: 4
[2025-06-06 19:35:51] This job has been restarted, cleaning up previous attempt
[2025-06-06 19:35:51] Checking for CVMFS
[2025-06-06 19:35:51] No cvmfs_config command found, will try listing directly
[2025-06-06 19:35:51] CVMFS is ok
[2025-06-06 19:35:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 19:35:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 19:35:51] Further information can be found at the LHC@home message board.
[2025-06-06 19:35:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 19:35:51] Checking for apptainer binary...
[2025-06-06 19:35:51] which: no apptainer in ((null))
[2025-06-06 19:35:51] apptainer is not installed, using version from CVMFS
[2025-06-06 19:35:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 19:35:51] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot8/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut07.grid.cesnet.cz
[2025-06-06 19:35:51] apptainer works
[2025-06-06 19:35:51] Set ATHENA_PROC_NUMBER=4
[2025-06-06 19:35:51] Set ATHENA_CORE_NUMBER=4
[2025-06-06 19:35:51] Starting ATLAS job with PandaID=6667729942
[2025-06-06 19:35:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot8/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 21:22:57]  *** The last 200 lines of the pilot log: ***
[2025-06-06 21:22:57] 2025-06-06 19:22:33,201 | INFO     | executing command: lscpu
[2025-06-06 21:22:57] 2025-06-06 19:22:33,235 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-06 21:22:57] 2025-06-06 19:22:33,989 | INFO     | PID=1792101 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-06-06 21:22:57] 2025-06-06 19:22:33,989 | INFO     | .. there are 2 such processes running
[2025-06-06 21:22:57] 2025-06-06 19:22:34,962 | INFO     | monitor loop #488: job 0:6667729942 is in state 'finished'
[2025-06-06 21:22:57] 2025-06-06 19:22:34,962 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-06 21:22:57] 2025-06-06 19:22:37,247 | INFO     | CPU arch script returned: x86-64-v4
[2025-06-06 21:22:57] 2025-06-06 19:22:37,247 | INFO     | using path: /scratch/boinc/var/slot8/slots/0/PanDA_Pilot-6667729942/memory_monitor_summary.json (trf name=prmon)
[2025-06-06 21:22:57] 2025-06-06 19:22:37,247 | INFO     | extracted standard info from prmon json
[2025-06-06 21:22:57] 2025-06-06 19:22:37,247 | INFO     | extracted standard memory fields from prmon json
[2025-06-06 21:22:57] 2025-06-06 19:22:37,247 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-06 21:22:57] 2025-06-06 19:22:37,248 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-06 21:22:57] 2025-06-06 19:22:37,248 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-06 21:22:57] 2025-06-06 19:22:37,249 | INFO     | fitting pss+swap vs Time
[2025-06-06 21:22:57] 2025-06-06 19:22:37,249 | INFO     | sum of square deviations: 358927660.0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,249 | INFO     | sum of deviations: -1211094975.999999
[2025-06-06 21:22:57] 2025-06-06 19:22:37,249 | INFO     | mean x: 1749234550.0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,249 | INFO     | mean y: 2440142.1428571427
[2025-06-06 21:22:57] 2025-06-06 19:22:37,249 | INFO     | -- intersect: 5904713528.793023
[2025-06-06 21:22:57] 2025-06-06 19:22:37,249 | INFO     | intersect: 5904713528.793023
[2025-06-06 21:22:57] 2025-06-06 19:22:37,249 | INFO     | chi2: 1.3998094934618162
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | sum of square deviations: 310052325.0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | sum of deviations: 141631325.00000226
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | mean x: 1749234397.5
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | mean y: 2444366.96
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | -- intersect: -796602650.1959127
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | intersect: -796602650.1959127
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | chi2: 1.4016240003834401
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | current chi2=1.4016240003834401 (change=-0.12962527616072983 %)
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | right removable region: 99
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | sum of square deviations: 310052325.0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | sum of deviations: -13340519897.5
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | mean x: 1749234702.5
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | mean y: 2476815.75
[2025-06-06 21:22:57] 2025-06-06 19:22:37,250 | INFO     | -- intersect: 75266225778.4412
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | intersect: 75266225778.4412
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | chi2: 0.05245470920390015
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | current chi2=0.05245470920390015 (change=96.25272514232088 %)
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | sum of square deviations: 265828240.0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | sum of deviations: -12626324547.000002
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | mean x: 1749234855.0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | mean y: 2474335.305263158
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | -- intersect: 83087728889.72916
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | intersect: 83087728889.72916
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | chi2: 0.04636108131955118
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | current chi2=0.04636108131955118 (change=11.616931972040918 %)
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | left removable region: 20
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | sum of square deviations: 152858680.0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,251 | INFO     | sum of deviations: -8847276093.0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | mean x: 1749234977.0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | mean y: 2474371.658227848
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | -- intersect: 101246085745.58548
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | intersect: 101246085745.58548
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | chi2: 0.03846128952551501
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | -- intersect: 101246085745.58548
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | current memory leak: -57.88 B/s (using 79 data points, chi2=0.04)
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | ..............................
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | . Timing measurements:
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | . get job = 0 s
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | . initial setup = 0 s
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | . payload setup = 4 s
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | . stage-in = 0 s
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | . payload execution = 6366 s
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | . stage-out = 0 s
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | . log creation = 0 s
[2025-06-06 21:22:57] 2025-06-06 19:22:37,252 | INFO     | ..............................
[2025-06-06 21:22:57] 2025-06-06 19:22:37,295 | INFO     | 
[2025-06-06 21:22:57] 2025-06-06 19:22:37,295 | INFO     | job summary report
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | --------------------------------------------------
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | PanDA job id: 6667729942
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | task id: 44871837
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | errors: (none)
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | pilot state: finished 
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | transexitcode: 0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | exeerrorcode: 0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | exeerrordiag: 
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | exitcode: 0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | exitmsg: OK
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | cpuconsumptiontime: 24447 s
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | nevents: 400
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | neventsw: 0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | pid: 1799113
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | pgrp: 1799113
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | corecount: 4
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | event service: False
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | sizes: {0: 2397402, 2: 2397608, 10: 2397636, 6374: 2424664, 6375: 2433625, 6378: 2433681, 6385: 2433979}
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | --------------------------------------------------
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | 
[2025-06-06 21:22:57] 2025-06-06 19:22:37,296 | INFO     | executing command: ls -lF /scratch/boinc/var/slot8/slots/0
[2025-06-06 21:22:57] 2025-06-06 19:22:37,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,308 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | job 6667729942 has completed (purged errors)
[2025-06-06 21:22:57] 2025-06-06 19:22:37,309 | INFO     | overall cleanup function is called
[2025-06-06 21:22:57] 2025-06-06 19:22:38,316 | INFO     | --- collectZombieJob: --- 10, [1799113]
[2025-06-06 21:22:57] 2025-06-06 19:22:38,316 | INFO     | zombie collector waiting for pid 1799113
[2025-06-06 21:22:57] 2025-06-06 19:22:38,316 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-06 21:22:57] 2025-06-06 19:22:38,316 | INFO     | collected zombie processes
[2025-06-06 21:22:57] 2025-06-06 19:22:38,316 | INFO     | will attempt to kill all subprocesses of pid=1799113
[2025-06-06 21:22:57] 2025-06-06 19:22:38,422 | INFO     | process IDs to be killed: [1799113] (in reverse order)
[2025-06-06 21:22:57] 2025-06-06 19:22:38,467 | WARNING  | found no corresponding commands to process id(s)
[2025-06-06 21:22:57] 2025-06-06 19:22:38,467 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-06 21:22:57] 2025-06-06 19:22:38,471 | INFO     | did not find any defunct processes belonging to 1799113
[2025-06-06 21:22:57] 2025-06-06 19:22:38,474 | INFO     | did not find any defunct processes belonging to 1799113
[2025-06-06 21:22:57] 2025-06-06 19:22:38,474 | INFO     | ready for new job
[2025-06-06 21:22:57] 2025-06-06 19:22:38,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-06 21:22:57] 2025-06-06 19:22:38,475 | INFO     | **************************************
[2025-06-06 21:22:57] 2025-06-06 19:22:38,475 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-06 21:22:57] 2025-06-06 19:22:38,475 | INFO     | **************************************
[2025-06-06 21:22:57] 2025-06-06 19:22:38,476 | INFO     | 
[2025-06-06 21:22:57] 2025-06-06 19:22:38,477 | INFO     | architecture information:
[2025-06-06 21:22:57] 2025-06-06 19:22:38,478 | INFO     | executing command: cat /etc/os-release
[2025-06-06 21:22:57] 2025-06-06 19:22:38,486 | INFO     | cat /etc/os-release:
[2025-06-06 21:22:57] NAME="CentOS Linux"
[2025-06-06 21:22:57] VERSION="7 (Core)"
[2025-06-06 21:22:57] ID="centos"
[2025-06-06 21:22:57] ID_LIKE="rhel fedora"
[2025-06-06 21:22:57] VERSION_ID="7"
[2025-06-06 21:22:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-06 21:22:57] ANSI_COLOR="0;31"
[2025-06-06 21:22:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-06 21:22:57] HOME_URL="https://www.centos.org/"
[2025-06-06 21:22:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-06 21:22:57] 
[2025-06-06 21:22:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-06 21:22:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-06 21:22:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-06 21:22:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-06 21:22:57] 
[2025-06-06 21:22:57] 2025-06-06 19:22:38,486 | INFO     | **************************************
[2025-06-06 21:22:57] 2025-06-06 19:22:38,989 | INFO     | executing command: df -mP /scratch/boinc/var/slot8/slots/0
[2025-06-06 21:22:57] 2025-06-06 19:22:38,999 | INFO     | sufficient remaining disk space (718062747648 B)
[2025-06-06 21:22:57] 2025-06-06 19:22:38,999 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-06 21:22:57] 2025-06-06 19:22:38,999 | INFO     | current server update state: UPDATING_FINAL
[2025-06-06 21:22:57] 2025-06-06 19:22:38,999 | INFO     | update_server=False
[2025-06-06 21:22:57] 2025-06-06 19:22:38,999 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-06 21:22:57] 2025-06-06 19:22:38,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-06 21:22:57] 2025-06-06 19:22:39,000 | INFO     | aborting loop
[2025-06-06 21:22:57] 2025-06-06 19:22:39,000 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-06-06 21:22:57] 2025-06-06 19:22:39,000 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-06 21:22:57] 2025-06-06 19:22:39,000 | INFO     | found 0 job(s) in 20 queues
[2025-06-06 21:22:57] 2025-06-06 19:22:39,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-06 21:22:57] 2025-06-06 19:22:39,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-06 21:22:57] 2025-06-06 19:22:39,475 | INFO     | all data control threads have been joined
[2025-06-06 21:22:57] 2025-06-06 19:22:39,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-06 21:22:57] 2025-06-06 19:22:40,005 | INFO     | [job] retrieve thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:40,005 | INFO     | [job] job monitor thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:40,005 | INFO     | [job] queue monitor thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:40,226 | INFO     | all job control threads have been joined
[2025-06-06 21:22:57] 2025-06-06 19:22:40,417 | INFO     | all payload control threads have been joined
[2025-06-06 21:22:57] 2025-06-06 19:22:40,480 | INFO     | [data] control thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:40,486 | INFO     | [data] copytool_in thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:40,617 | INFO     | [payload] failed_post thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:40,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-06 21:22:57] 2025-06-06 19:22:40,912 | INFO     | [job] validate thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:40,988 | INFO     | [job] create_data_payload thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:41,043 | INFO     | [payload] validate_pre thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:41,095 | INFO     | [payload] validate_post thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:41,232 | INFO     | [job] control thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:41,422 | INFO     | [payload] control thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:41,470 | INFO     | [payload] execute_payloads thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:41,936 | INFO     | [data] copytool_out thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:44,813 | INFO     | [data] queue_monitor thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:49,385 | INFO     | job.realtimelogging is not enabled
[2025-06-06 21:22:57] 2025-06-06 19:22:50,390 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-06 21:22:57] 2025-06-06 19:22:52,135 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23290460526400)>', '<ExcThread(monitor, started 23290225587968)>']
[2025-06-06 21:22:57] 2025-06-06 19:22:53,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-06 21:22:57] 2025-06-06 19:22:53,071 | INFO     | [monitor] control thread has ended
[2025-06-06 21:22:57] 2025-06-06 19:22:57,156 | INFO     | all workflow threads have been joined
[2025-06-06 21:22:57] 2025-06-06 19:22:57,156 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-06 21:22:57] 2025-06-06 19:22:57,156 | INFO     | traces error code: 0
[2025-06-06 21:22:57] 2025-06-06 19:22:57,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-06 21:22:57] 2025-06-06 19:22:57,225 [wrapper] ==== pilot stdout END ====
[2025-06-06 21:22:57] 2025-06-06 19:22:57,227 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-06 21:22:57] 2025-06-06 19:22:57,228 [wrapper] pilotpid: 1792101
[2025-06-06 21:22:57] 2025-06-06 19:22:57,230 [wrapper] Pilot exit status: 0
[2025-06-06 21:22:57] 2025-06-06 19:22:57,236 [wrapper] pandaids: 6667729942 6667729942
[2025-06-06 21:22:57] 2025-06-06 19:22:57,266 [wrapper] cleanup supervisor_pilot 1893627 1792102
[2025-06-06 21:22:57] 2025-06-06 19:22:57,268 [wrapper] Test setup, not cleaning
[2025-06-06 21:22:57] 2025-06-06 19:22:57,270 [wrapper] apfmon messages muted
[2025-06-06 21:22:57] 2025-06-06 19:22:57,271 [wrapper] ==== wrapper stdout END ====
[2025-06-06 21:22:57] 2025-06-06 19:22:57,273 [wrapper] ==== wrapper stderr END ====
[2025-06-06 21:22:57]  *** Error codes and diagnostics ***
[2025-06-06 21:22:57]     "exeErrorCode": 0,
[2025-06-06 21:22:57]     "exeErrorDiag": "",
[2025-06-06 21:22:57]     "pilotErrorCode": 0,
[2025-06-06 21:22:57]     "pilotErrorDiag": "",
[2025-06-06 21:22:57]  *** Listing of results directory ***
[2025-06-06 21:22:57] total 723288
[2025-06-06 21:22:57] drwx------ 4 boinc boinc      4096 Apr  3 10:00 pilot3
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc    495897 May 28 00:42 pilot3.tar.gz
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc      5111 May 28 01:01 queuedata.json
[2025-06-06 21:22:57] -rwx------ 1 boinc boinc     37140 May 28 01:04 runpilot2-wrapper.sh
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc       100 Jun  4 03:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-06 21:22:57] -rwxr-xr-x 1 boinc boinc      7986 Jun  4 03:46 run_atlas
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc       105 Jun  4 03:46 job.xml
[2025-06-06 21:22:57] -rw------- 2 boinc boinc  91160576 Jun  4 03:47 copy_pve5jv
[2025-06-06 21:22:57] -rw------- 2 boinc boinc  11862016 Jun  4 04:00 copy_TQqu5G
[2025-06-06 21:22:57] -rw-r--r-- 3 boinc boinc 221676121 Jun  6 18:24 EVNT.44871834._002928.pool.root.1
[2025-06-06 21:22:57] -rw-r--r-- 3 boinc boinc 221676121 Jun  6 18:24 ATLAS.root_0
[2025-06-06 21:22:57] -rw-r--r-- 2 boinc boinc     15093 Jun  6 18:24 start_atlas.sh
[2025-06-06 21:22:57] drwxrwx--x 2 boinc boinc      4096 Jun  6 18:24 shared
[2025-06-06 21:22:57] -rw-r--r-- 2 boinc boinc    508881 Jun  6 18:24 input.tar.gz
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc         0 Jun  6 18:24 boinc_lockfile
[2025-06-06 21:22:57] -rw------- 1 boinc boinc   1598969 Jun  6 18:24 agis_ddmendpoints.agis.ALL.json
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc      2559 Jun  6 19:35 pandaJob.out
[2025-06-06 21:22:57] -rw------- 1 boinc boinc    985748 Jun  6 19:35 agis_schedconf.cvmfs.json
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc      6640 Jun  6 20:39 init_data.xml
[2025-06-06 21:22:57] -rw------- 1 boinc boinc        97 Jun  6 21:21 pilot_heartbeat.json
[2025-06-06 21:22:57] -rw------- 1 boinc boinc 188623657 Jun  6 21:22 HITS.44871837._074754.pool.root.1
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc       530 Jun  6 21:22 boinc_task_state.xml
[2025-06-06 21:22:57] -rw------- 1 boinc boinc      1030 Jun  6 21:22 memory_monitor_summary.json
[2025-06-06 21:22:57] -rw------- 1 boinc boinc    266720 Jun  6 21:22 log.44871837._074754.job.log.tgz.1
[2025-06-06 21:22:57] -rw------- 1 boinc boinc      7722 Jun  6 21:22 heartbeat.json
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc      8192 Jun  6 21:22 boinc_mmap_file
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc        27 Jun  6 21:22 wrapper_checkpoint.txt
[2025-06-06 21:22:57] -rw------- 1 boinc boinc      4557 Jun  6 21:22 pilotlog.txt
[2025-06-06 21:22:57] -rw------- 1 boinc boinc    632400 Jun  6 21:22 log.44871837._074754.job.log.1
[2025-06-06 21:22:57] -rw------- 1 boinc boinc       357 Jun  6 21:22 output.list
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc       620 Jun  6 21:22 runtime_log
[2025-06-06 21:22:57] -rw------- 1 boinc boinc    921600 Jun  6 21:22 result.tar.gz
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc      9087 Jun  6 21:22 runtime_log.err
[2025-06-06 21:22:57] -rw------- 1 boinc boinc       785 Jun  6 21:22 EtRKDmjWIe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmEYSKDmF38Xan.diag
[2025-06-06 21:22:57] -rw-r--r-- 1 boinc boinc     22858 Jun  6 21:22 stderr.txt
[2025-06-06 21:22:57] HITS file was successfully produced:
[2025-06-06 21:22:57] -rw------- 1 boinc boinc 188623657 Jun  6 21:22 shared/HITS.pool.root.1
[2025-06-06 21:22:57]  *** Contents of shared directory: ***
[2025-06-06 21:22:57] total 502724
[2025-06-06 21:22:57] -rw------- 2 boinc boinc  91160576 Jun  4 03:47 copy_pve5jv
[2025-06-06 21:22:57] -rw------- 2 boinc boinc  11862016 Jun  4 04:00 copy_TQqu5G
[2025-06-06 21:22:57] -rw-r--r-- 3 boinc boinc 221676121 Jun  6 18:24 ATLAS.root_0
[2025-06-06 21:22:57] -rw-r--r-- 2 boinc boinc     15093 Jun  6 18:24 start_atlas.sh
[2025-06-06 21:22:57] -rw-r--r-- 2 boinc boinc    508881 Jun  6 18:24 input.tar.gz
[2025-06-06 21:22:57] -rw------- 1 boinc boinc 188623657 Jun  6 21:22 HITS.pool.root.1
[2025-06-06 21:22:57] -rw------- 1 boinc boinc    921600 Jun  6 21:22 result.tar.gz
21:22:58 (1788087): run_atlas exited; CPU time 24524.600500
21:22:58 (1788087): called boinc_finish(0)

</stderr_txt>
]]>

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