Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-06-02 04:57:49 (6964): Detected: vboxwrapper 26206
2025-06-02 04:57:49 (6964): Detected: BOINC client v8.0.2
2025-06-02 04:57:52 (6964): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-06-02 04:57:52 (6964): Successfully copied 'init_data.xml' to the shared directory.
2025-06-02 04:57:53 (6964): Create VM. (boinc_582592bd8b2e9145, slot#1)
2025-06-02 04:57:54 (6964): Setting Memory Size for VM. (4400MB)
2025-06-02 04:57:54 (6964): Setting CPU Count for VM. (4)
2025-06-02 04:57:54 (6964): Setting Chipset Options for VM.
2025-06-02 04:57:54 (6964): Setting Graphics Controller Options for VM.
2025-06-02 04:57:55 (6964): Setting Boot Options for VM.
2025-06-02 04:57:55 (6964): Setting Network Configuration for NAT.
2025-06-02 04:57:55 (6964): Enabling VM Network Access.
2025-06-02 04:57:56 (6964): Disabling USB Support for VM.
2025-06-02 04:57:56 (6964): Disabling COM Port Support for VM.
2025-06-02 04:57:56 (6964): Disabling LPT Port Support for VM.
2025-06-02 04:57:56 (6964): Disabling Audio Support for VM.
2025-06-02 04:57:57 (6964): Disabling Clipboard Support for VM.
2025-06-02 04:57:57 (6964): Disabling Drag and Drop Support for VM.
2025-06-02 04:57:57 (6964): Adding storage controller(s) to VM.
2025-06-02 04:57:57 (6964): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-06-02 04:58:00 (6964): Adding VirtualBox Guest Additions to VM.
2025-06-02 04:58:01 (6964): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-06-02 04:58:01 (6964): forwarding host port 65009 to guest port 80
2025-06-02 04:58:02 (6964): Enabling remote desktop for VM.
2025-06-02 04:58:02 (6964): Required extension pack not installed, remote desktop not enabled.
2025-06-02 04:58:02 (6964): Enabling shared directory for VM.
2025-06-02 04:58:03 (6964): Starting VM using VBoxManage interface. (boinc_582592bd8b2e9145, slot#1)
2025-06-02 04:58:20 (6964): Successfully started VM. (PID = '5264')
2025-06-02 04:58:20 (6964): Reporting VM Process ID to BOINC.
2025-06-02 04:58:20 (6964): Guest Log: BIOS: VirtualBox 7.0.6
2025-06-02 04:58:20 (6964): Guest Log: CPUID EDX: 0x178bfbff
2025-06-02 04:58:20 (6964): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-06-02 04:58:20 (6964): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-06-02 04:58:20 (6964): VM state change detected. (old = 'poweredoff', new = 'running')
2025-06-02 04:58:20 (6964): Detected: Web Application Enabled (http://localhost:65009)
2025-06-02 04:58:20 (6964): Preference change detected
2025-06-02 04:58:20 (6964): Setting CPU throttle for VM. (100%)
2025-06-02 04:58:20 (6964): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-06-02 04:58:22 (6964): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-06-02 04:58:22 (6964): Guest Log: BIOS: Booting from Hard Disk...
2025-06-02 04:58:29 (6964): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-06-02 04:58:29 (6964): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-06-02 04:58:29 (6964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-06-02 04:58:50 (6964): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-06-02 04:58:50 (6964): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-06-02 04:59:29 (6964): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-06-02 04:59:29 (6964): Guest Log: 00:00:00.000283 main     Log opened 2025-06-02T04:59:27.278776000Z
2025-06-02 04:59:29 (6964): Guest Log: 00:00:00.001563 main     OS Product: Linux
2025-06-02 04:59:29 (6964): Guest Log: 00:00:00.002488 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-06-02 04:59:29 (6964): Guest Log: 00:00:00.002895 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-06-02 04:59:29 (6964): Guest Log: 00:00:00.002984 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-06-02 04:59:29 (6964): Guest Log: 00:00:00.002986 main     Process ID: 1318
2025-06-02 04:59:29 (6964): Guest Log: 00:00:00.002987 main     Package type: LINUX_64BITS_GENERIC
2025-06-02 04:59:29 (6964): Guest Log: 00:00:00.003897 main     5.2.32 r132073 started. Verbose level = 0
2025-06-02 04:59:29 (6964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-06-02 04:59:29 (6964): Guest Log: [INFO] Mounting shared directory
2025-06-02 04:59:30 (6964): Guest Log: [INFO] Checking for init_data.xml
2025-06-02 04:59:36 (6964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-06-02 04:59:36 (6964): Guest Log: [INFO] Detected branch: prod
2025-06-02 04:59:37 (6964): Guest Log: This is the prod version of the ATLAS job wrapper
2025-06-02 04:59:37 (6964): Guest Log: Copying input files
2025-06-02 04:59:39 (6964): Guest Log: 00:00:10.011991 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 550 670 000ns (GuestNow=1 748 833 178 734 434 000 ns GuestLast=1 748 840 367 285 104 000 ns fSetTimeLastLoop=true )
2025-06-02 04:59:42 (6964): Guest Log: Copied input files into RunAtlas.
2025-06-02 04:59:43 (6964): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-06-02 04:59:43 (6964): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-06-02 04:59:43 (6964): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-06-02 04:59:43 (6964): Guest Log: Further information can be found at the LHC@home message board.
2025-06-02 04:59:57 (6964): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-06-02 04:59:58 (6964): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-06-02 04:59:58 (6964): Guest Log: 2.6.3.0 1597 0 30148 146690 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-06-02 05:00:02 (6964): Guest Log: copied the webapp to /var/www
2025-06-02 05:00:02 (6964): Guest Log: ATHENA_PROC_NUMBER=4
2025-06-02 05:00:02 (6964): Guest Log: ATHENA_CORE_NUMBER=4
2025-06-02 05:00:02 (6964): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-06-02 05:00:02 (6964): Guest Log:  *** Starting ATLAS job. (PandaID=6667280455 taskID=44871837) ***
2025-06-02 06:44:18 (6964): Status Report: Elapsed Time: '6000.774679'
2025-06-02 06:44:19 (6964): Status Report: CPU Time: '20289.828125'
2025-06-02 08:32:11 (6964): Status Report: Elapsed Time: '12001.429728'
2025-06-02 08:32:11 (6964): Status Report: CPU Time: '46029.343750'
2025-06-02 10:03:46 (6964): Guest Log:  *** Job finished ***
2025-06-02 10:03:46 (6964): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:34,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:35,572 | INFO     | [job] queue monitor thread has finished
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:35,937 | INFO     | [data] queue_monitor thread has finished
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:37,879 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140118281832256)>', '<ExcThread(monitor, started 140117838640896)>']
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:38,596 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:38,611 | INFO     | [monitor] control thread has ended
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:42,897 | INFO     | all workflow threads have been joined
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:42,900 | INFO     | end of generic workflow (traces error code: 0)
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:42,902 | INFO     | traces error code: 0
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:42,902 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:43,371 [wrapper] ==== pilot stdout END ====
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:43,389 [wrapper] ==== wrapper stdout RESUME ====
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:43,411 [wrapper] pilotpid: 5950
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:43,435 [wrapper] Pilot exit status: 0
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:43,746 [wrapper] pandaids: 6667280455
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:43,951 [wrapper] cleanup supervisor_pilot 20550 5951
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:43,975 [wrapper] Test setup, not cleaning
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:43,983 [wrapper] apfmon messages muted
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:43,994 [wrapper] ==== wrapper stdout END ====
2025-06-02 10:03:46 (6964): Guest Log: 2025-06-02 08:03:44,023 [wrapper] ==== wrapper stderr END ====
2025-06-02 10:03:46 (6964): Guest Log:  *** Error codes and diagnostics ***
2025-06-02 10:03:46 (6964): Guest Log:     "exeErrorCode": 0,
2025-06-02 10:03:46 (6964): Guest Log:     "exeErrorDiag": "",
2025-06-02 10:03:46 (6964): Guest Log:     "pilotErrorCode": 0,
2025-06-02 10:03:46 (6964): Guest Log:     "pilotErrorDiag": "",
2025-06-02 10:03:46 (6964): Guest Log:  *** Listing of results directory ***
2025-06-02 10:03:46 (6964): Guest Log: total 197016
2025-06-02 10:03:46 (6964): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 15:39 pilot3.tar.gz
2025-06-02 10:03:46 (6964): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 16:16 runpilot2-wrapper.sh
2025-06-02 10:03:46 (6964): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 16:16 queuedata.json
2025-06-02 10:03:46 (6964): Guest Log: -rwxr-xr-x. 1 atlas atlas      9500 Jun  2 02:59 init_data.xml
2025-06-02 10:03:46 (6964): Guest Log: -rwxr-xr-x. 1 atlas atlas    508874 Jun  2 02:59 input.tar.gz
2025-06-02 10:03:46 (6964): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 Jun  2 02:59 start_atlas.sh
2025-06-02 10:03:46 (6964): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jun  2 02:59 EVNT.44871834._002755.pool.root.1 -> /data/./ATLAS.root_0
2025-06-02 10:03:46 (6964): Guest Log: -rw-r--r--. 1 atlas atlas      2559 Jun  2 03:00 pandaJob.out
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas    988188 Jun  2 03:02 agis_schedconf.cvmfs.json
2025-06-02 10:03:46 (6964): Guest Log: drwx------. 4 atlas atlas      4096 Jun  2 03:02 pilot3
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas 194285030 Jun  2 08:00 HITS.44871837._070096.pool.root.1
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas      1034 Jun  2 08:01 memory_monitor_summary.json
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas   1603667 Jun  2 08:01 agis_ddmendpoints.agis.ALL.json
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas    356117 Jun  2 08:01 log.44871837._070096.job.log.tgz.1
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas        95 Jun  2 08:03 pilot_heartbeat.json
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas      7729 Jun  2 08:03 heartbeat.json
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas      4729 Jun  2 08:03 pilotlog.txt
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas   1492499 Jun  2 08:03 log.44871837._070096.job.log.1
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas       357 Jun  2 08:03 output.list
2025-06-02 10:03:46 (6964): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jun  2 08:03 runtime_log
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas   1863680 Jun  2 08:03 result.tar.gz
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas       656 Jun  2 08:03 VIANDmI9Be7n9Rq4apOajLDm4fhM0noT9bVof3QYDmq4RKDm4PSwvn.diag
2025-06-02 10:03:46 (6964): Guest Log: -rw-r--r--. 1 atlas atlas      8590 Jun  2 08:03 runtime_log.err
2025-06-02 10:03:46 (6964): Guest Log: Looking for outputfile HITS.44871837._070096.pool.root.1
2025-06-02 10:03:46 (6964): Guest Log: HITS file was successfully produced
2025-06-02 10:03:46 (6964): Guest Log: -rw-------. 1 atlas atlas 194285030 Jun  2 08:00 /home/atlas/RunAtlas/HITS.44871837._070096.pool.root.1
2025-06-02 10:03:52 (6964): Guest Log: Successfully finished the ATLAS job!
2025-06-02 10:03:52 (6964): Guest Log: Copying the results back to the shared directory!
2025-06-02 10:03:53 (6964): Guest Log:  *** Contents of shared directory: ***
2025-06-02 10:03:53 (6964): Guest Log: total 409916
2025-06-02 10:03:53 (6964): Guest Log: -rwxrwxrwx. 1 root root 223063659 Jun  2 02:57 ATLAS.root_0
2025-06-02 10:03:53 (6964): Guest Log: -rwxrwxrwx. 1 root root 194285030 Jun  2 08:03 HITS.pool.root.1
2025-06-02 10:03:53 (6964): Guest Log: -rwxrwxrwx. 1 root root      9500 Jun  2 02:57 init_data.xml
2025-06-02 10:03:53 (6964): Guest Log: -rwxrwxrwx. 1 root root    508874 May 28 02:09 input.tar.gz
2025-06-02 10:03:53 (6964): Guest Log: -rwxrwxrwx. 1 root root   1863680 Jun  2 08:03 result.tar.gz
2025-06-02 10:03:53 (6964): Guest Log: -rwxrwxrwx. 1 root root     15093 May 28 02:09 start_atlas.sh
2025-06-02 10:03:53 (6964): Guest Log:  *** Success! Shutting down the machine. ***
2025-06-02 10:03:53 (6964): VM Completion File Detected.
2025-06-02 10:03:53 (6964): Powering off VM.
2025-06-02 10:03:57 (6964): Successfully stopped VM.
2025-06-02 10:03:57 (6964): Deregistering VM. (boinc_582592bd8b2e9145, slot#1)
2025-06-02 10:03:57 (6964): Removing network bandwidth throttle group from VM.
2025-06-02 10:03:57 (6964): Removing VM from VirtualBox.
10:04:03 (6964): called boinc_finish(0)

</stderr_txt>
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