Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-28 12:11:12 (5385): Detected: vboxwrapper 26206
2025-05-28 12:11:12 (5385): Detected: BOINC client v8.0.2
2025-05-28 12:11:13 (5385): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-05-28 12:11:13 (5385): Successfully copied 'init_data.xml' to the shared directory.
2025-05-28 12:11:13 (5385): Create VM. (boinc_08086237bd93ee6f, slot#0)
2025-05-28 12:11:13 (5385): Setting Memory Size for VM. (4300MB)
2025-05-28 12:11:13 (5385): Setting CPU Count for VM. (3)
2025-05-28 12:11:13 (5385): Setting Chipset Options for VM.
2025-05-28 12:11:13 (5385): Setting Graphics Controller Options for VM.
2025-05-28 12:11:13 (5385): Setting Boot Options for VM.
2025-05-28 12:11:13 (5385): Setting Network Configuration for NAT.
2025-05-28 12:11:13 (5385): Enabling VM Network Access.
2025-05-28 12:11:13 (5385): Disabling USB Support for VM.
2025-05-28 12:11:14 (5385): Disabling COM Port Support for VM.
2025-05-28 12:11:14 (5385): Disabling LPT Port Support for VM.
2025-05-28 12:11:14 (5385): Disabling Audio Support for VM.
2025-05-28 12:11:14 (5385): Disabling Clipboard Support for VM.
2025-05-28 12:11:14 (5385): Disabling Drag and Drop Support for VM.
2025-05-28 12:11:14 (5385): Adding storage controller(s) to VM.
2025-05-28 12:11:14 (5385): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-28 12:11:16 (5385): Adding VirtualBox Guest Additions to VM.
2025-05-28 12:11:16 (5385): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-28 12:11:16 (5385): forwarding host port 47651 to guest port 80
2025-05-28 12:11:16 (5385): Enabling remote desktop for VM.
2025-05-28 12:11:16 (5385): Required extension pack not installed, remote desktop not enabled.
2025-05-28 12:11:16 (5385): Enabling shared directory for VM.
2025-05-28 12:11:16 (5385): Starting VM using VBoxManage interface. (boinc_08086237bd93ee6f, slot#0)
2025-05-28 12:11:17 (5385): Successfully started VM. (PID = '5968')
2025-05-28 12:11:17 (5385): Reporting VM Process ID to BOINC.
2025-05-28 12:11:17 (5385): Guest Log: BIOS: VirtualBox 7.1.6
2025-05-28 12:11:17 (5385): Guest Log: CPUID EDX: 0x178bfbff
2025-05-28 12:11:17 (5385): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-28 12:11:17 (5385): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-28 12:11:17 (5385): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-28 12:11:17 (5385): Detected: Web Application Enabled (http://localhost:47651)
2025-05-28 12:11:17 (5385): Preference change detected
2025-05-28 12:11:17 (5385): Setting CPU throttle for VM. (100%)
2025-05-28 12:11:18 (5385): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-28 12:11:19 (5385): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-28 12:11:19 (5385): Guest Log: BIOS: Booting from Hard Disk...
2025-05-28 12:11:22 (5385): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-28 12:11:22 (5385): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-28 12:11:22 (5385): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-28 12:11:28 (5385): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-28 12:11:28 (5385): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-28 12:11:34 (5385): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-28 12:11:34 (5385): Guest Log: 00:00:00.000194 main     Log opened 2025-05-28T19:11:32.980066000Z
2025-05-28 12:11:34 (5385): Guest Log: 00:00:00.000314 main     OS Product: Linux
2025-05-28 12:11:34 (5385): Guest Log: 00:00:00.000356 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-28 12:11:34 (5385): Guest Log: 00:00:00.000374 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-28 12:11:34 (5385): Guest Log: 00:00:00.000389 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-28 12:11:34 (5385): Guest Log: 00:00:00.000390 main     Process ID: 1288
2025-05-28 12:11:34 (5385): Guest Log: 00:00:00.000390 main     Package type: LINUX_64BITS_GENERIC
2025-05-28 12:11:34 (5385): Guest Log: 00:00:00.001302 main     5.2.32 r132073 started. Verbose level = 0
2025-05-28 12:11:34 (5385): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-28 12:11:34 (5385): Guest Log: [INFO] Mounting shared directory
2025-05-28 12:11:34 (5385): Guest Log: [INFO] Checking for init_data.xml
2025-05-28 12:11:39 (5385): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-28 12:11:39 (5385): Guest Log: [INFO] Detected branch: prod
2025-05-28 12:11:39 (5385): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-28 12:11:39 (5385): Guest Log: Copying input files
2025-05-28 12:11:40 (5385): Guest Log: Copied input files into RunAtlas.
2025-05-28 12:11:40 (5385): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-28 12:11:40 (5385): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-28 12:11:40 (5385): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-28 12:11:40 (5385): Guest Log: Further information can be found at the LHC@home message board.
2025-05-28 12:11:49 (5385): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-28 12:11:49 (5385): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-28 12:11:49 (5385): Guest Log: 2.6.3.0 1564 0 29996 146528 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-28 12:11:50 (5385): Guest Log: copied the webapp to /var/www
2025-05-28 12:11:50 (5385): Guest Log: ATHENA_PROC_NUMBER=3
2025-05-28 12:11:50 (5385): Guest Log: ATHENA_CORE_NUMBER=3
2025-05-28 12:11:50 (5385): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-28 12:11:50 (5385): Guest Log:  *** Starting ATLAS job. (PandaID=6667098685 taskID=44871837) ***
2025-05-28 13:50:18 (5385): Status Report: Elapsed Time: '6000.000000'
2025-05-28 13:50:18 (5385): Status Report: CPU Time: '16986.220000'
2025-05-28 15:29:19 (5385): Status Report: Elapsed Time: '12000.000000'
2025-05-28 15:29:19 (5385): Status Report: CPU Time: '34809.170000'
2025-05-28 15:45:36 (5385): Guest Log:  *** Job finished ***
2025-05-28 15:45:36 (5385): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:26,501 | INFO     | [job] validate thread has finished
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:27,094 | INFO     | [data] copytool_out thread has finished
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:28,136 | INFO     | [data] queue_monitor thread has finished
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:29,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140051510585152)>', '<ExcThread(monitor, started 140050922710784)>']
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:30,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:30,160 | INFO     | [monitor] control thread has ended
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:34,786 | INFO     | all workflow threads have been joined
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:34,787 | INFO     | end of generic workflow (traces error code: 0)
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:34,787 | INFO     | traces error code: 0
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:34,788 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:34,945 [wrapper] ==== pilot stdout END ====
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:34,951 [wrapper] ==== wrapper stdout RESUME ====
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:34,957 [wrapper] pilotpid: 5863
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:34,964 [wrapper] Pilot exit status: 0
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:35,066 [wrapper] pandaids: 6667098685
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:35,113 [wrapper] cleanup supervisor_pilot 13634 5864
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:35,122 [wrapper] Test setup, not cleaning
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:35,130 [wrapper] apfmon messages muted
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:35,137 [wrapper] ==== wrapper stdout END ====
2025-05-28 15:45:36 (5385): Guest Log: 2025-05-28 22:45:35,144 [wrapper] ==== wrapper stderr END ====
2025-05-28 15:45:36 (5385): Guest Log:  *** Error codes and diagnostics ***
2025-05-28 15:45:36 (5385): Guest Log:     "exeErrorCode": 0,
2025-05-28 15:45:36 (5385): Guest Log:     "exeErrorDiag": "",
2025-05-28 15:45:36 (5385): Guest Log:     "pilotErrorCode": 0,
2025-05-28 15:45:36 (5385): Guest Log:     "pilotErrorDiag": "",
2025-05-28 15:45:36 (5385): Guest Log:  *** Listing of results directory ***
2025-05-28 15:45:36 (5385): Guest Log: total 195360
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 13:20 pilot3.tar.gz
2025-05-28 15:45:36 (5385): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 13:41 runpilot2-wrapper.sh
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 13:41 queuedata.json
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 atlas atlas     15093 May 28 19:11 start_atlas.sh
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 atlas atlas      6713 May 28 19:11 init_data.xml
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 atlas atlas    508876 May 28 19:11 input.tar.gz
2025-05-28 15:45:36 (5385): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 28 19:11 EVNT.44871834._002681.pool.root.1 -> /data/./ATLAS.root_0
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 atlas atlas      2555 May 28 19:11 pandaJob.out
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas    992485 May 28 19:12 agis_schedconf.cvmfs.json
2025-05-28 15:45:36 (5385): Guest Log: drwx------. 4 atlas atlas      4096 May 28 19:12 pilot3
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas 193471374 May 28 22:44 HITS.44871837._068166.pool.root.1
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas      1036 May 28 22:44 memory_monitor_summary.json
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas   1603667 May 28 22:45 agis_ddmendpoints.agis.ALL.json
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas    282514 May 28 22:45 log.44871837._068166.job.log.tgz.1
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas        95 May 28 22:45 pilot_heartbeat.json
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas      7706 May 28 22:45 heartbeat.json
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas      4413 May 28 22:45 pilotlog.txt
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas   1119859 May 28 22:45 log.44871837._068166.job.log.1
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas       357 May 28 22:45 output.list
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 28 22:45 runtime_log
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas   1423360 May 28 22:45 result.tar.gz
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas       658 May 28 22:45 zPlNDm3j9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTYZKDm4GkZFo.diag
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 atlas atlas      8586 May 28 22:45 runtime_log.err
2025-05-28 15:45:36 (5385): Guest Log: Looking for outputfile HITS.44871837._068166.pool.root.1
2025-05-28 15:45:36 (5385): Guest Log: HITS file was successfully produced
2025-05-28 15:45:36 (5385): Guest Log: -rw-------. 1 atlas atlas 193471374 May 28 22:44 /home/atlas/RunAtlas/HITS.44871837._068166.pool.root.1
2025-05-28 15:45:36 (5385): Guest Log: Successfully finished the ATLAS job!
2025-05-28 15:45:36 (5385): Guest Log: Copying the results back to the shared directory!
2025-05-28 15:45:36 (5385): Guest Log:  *** Contents of shared directory: ***
2025-05-28 15:45:36 (5385): Guest Log: total 219984
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 root root 223297447 May 28 19:11 ATLAS.root_0
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 root root      6713 May 28 19:11 init_data.xml
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 root root    508876 May 28 19:11 input.tar.gz
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 root root   1423360 May 28  2025 result.tar.gz
2025-05-28 15:45:36 (5385): Guest Log: -rw-r--r--. 1 root root     15093 May 28 19:11 start_atlas.sh
2025-05-28 15:45:36 (5385): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-28 15:45:36 (5385): VM Completion File Detected.
2025-05-28 15:45:36 (5385): Powering off VM.
2025-05-28 15:45:36 (5385): Successfully stopped VM.
2025-05-28 15:45:36 (5385): Deregistering VM. (boinc_08086237bd93ee6f, slot#0)
2025-05-28 15:45:37 (5385): Removing network bandwidth throttle group from VM.
2025-05-28 15:45:37 (5385): Removing VM from VirtualBox.
15:45:42 (5385): called boinc_finish(0)

</stderr_txt>
]]>

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