Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:56:32 (1640807): wrapper (7.7.26015): starting
08:56:32 (1640807): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 08:56:32] Arguments: --nthreads 4
[2025-06-03 08:56:32] Threads: 4
[2025-06-03 08:56:32] Checking for CVMFS
[2025-06-03 08:56:32] No cvmfs_config command found, will try listing directly
[2025-06-03 08:56:32] CVMFS is ok
[2025-06-03 08:56:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 08:56:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 08:56:32] Further information can be found at the LHC@home message board.
[2025-06-03 08:56:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:56:32] Checking for apptainer binary...
[2025-06-03 08:56:32] which: no apptainer in ((null))
[2025-06-03 08:56:32] apptainer is not installed, using version from CVMFS
[2025-06-03 08:56:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:56:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut31.grid.cesnet.cz
[2025-06-03 08:56:32] apptainer works
[2025-06-03 08:56:32] Set ATHENA_PROC_NUMBER=4
[2025-06-03 08:56:32] Set ATHENA_CORE_NUMBER=4
[2025-06-03 08:56:32] Starting ATLAS job with PandaID=6667435850
[2025-06-03 08:56:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:40:32]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:40:32] 2025-06-03 11:35:35,169 | INFO     | job 6667435850 has finished - writing final server update
[2025-06-03 13:40:32] 2025-06-03 11:35:35,169 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4479/.job.ad'
[2025-06-03 13:40:32] 2025-06-03 11:35:35,170 | INFO     | total number of processed events: 400 (read)
[2025-06-03 13:40:32] 2025-06-03 11:35:35,173 | INFO     | executing command: lscpu
[2025-06-03 13:40:32] 2025-06-03 11:35:35,216 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 13:40:32] 2025-06-03 11:35:36,369 | INFO     | monitor loop #1220: job 0:6667435850 is in state 'finished'
[2025-06-03 13:40:32] 2025-06-03 11:35:36,369 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:40:32] 2025-06-03 11:35:38,738 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 13:40:32] 2025-06-03 11:35:38,739 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6667435850/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:40:32] 2025-06-03 11:35:38,740 | INFO     | extracted standard info from prmon json
[2025-06-03 13:40:32] 2025-06-03 11:35:38,740 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:40:32] 2025-06-03 11:35:38,740 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:40:32] 2025-06-03 11:35:38,741 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:40:32] 2025-06-03 11:35:38,741 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:40:32] 2025-06-03 11:35:38,747 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:40:32] 2025-06-03 11:35:38,748 | INFO     | sum of square deviations: 6378584712.5
[2025-06-03 13:40:32] 2025-06-03 11:35:38,750 | INFO     | sum of deviations: -35317726075.99999
[2025-06-03 13:40:32] 2025-06-03 11:35:38,750 | INFO     | mean x: 1748942152.5
[2025-06-03 13:40:32] 2025-06-03 11:35:38,750 | INFO     | mean y: 2368131.7664233577
[2025-06-03 13:40:32] 2025-06-03 11:35:38,750 | INFO     | -- intersect: 9686124427.064636
[2025-06-03 13:40:32] 2025-06-03 11:35:38,751 | INFO     | intersect: 9686124427.064636
[2025-06-03 13:40:32] 2025-06-03 11:35:38,751 | INFO     | chi2: 1.9412876525311615
[2025-06-03 13:40:32] 2025-06-03 11:35:38,752 | INFO     | sum of square deviations: 6035722470.0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,754 | INFO     | sum of deviations: -34725968858.0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,754 | INFO     | mean x: 1748942000.0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,754 | INFO     | mean y: 2368395.0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,754 | INFO     | -- intersect: 10064743815.394077
[2025-06-03 13:40:32] 2025-06-03 11:35:38,755 | INFO     | intersect: 10064743815.394077
[2025-06-03 13:40:32] 2025-06-03 11:35:38,755 | INFO     | chi2: 1.9386266274110253
[2025-06-03 13:40:32] 2025-06-03 11:35:38,755 | INFO     | current chi2=1.9386266274110253 (change=0.13707526118896504 %)
[2025-06-03 13:40:32] 2025-06-03 11:35:38,755 | INFO     | right removable region: 268
[2025-06-03 13:40:32] 2025-06-03 11:35:38,756 | INFO     | sum of square deviations: 6035722470.0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,758 | INFO     | sum of deviations: -72800706200.00009
[2025-06-03 13:40:32] 2025-06-03 11:35:38,758 | INFO     | mean x: 1748942305.0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,758 | INFO     | mean y: 2384648.2416356876
[2025-06-03 13:40:32] 2025-06-03 11:35:38,759 | INFO     | -- intersect: 21097495554.99874
[2025-06-03 13:40:32] 2025-06-03 11:35:38,759 | INFO     | intersect: 21097495554.99874
[2025-06-03 13:40:32] 2025-06-03 11:35:38,759 | INFO     | chi2: 0.48785222852522436
[2025-06-03 13:40:32] 2025-06-03 11:35:38,759 | INFO     | current chi2=0.48785222852522436 (change=74.86965788459352 %)
[2025-06-03 13:40:32] 2025-06-03 11:35:38,760 | INFO     | sum of square deviations: 5705372090.0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,762 | INFO     | sum of deviations: -62359642175.99999
[2025-06-03 13:40:32] 2025-06-03 11:35:38,762 | INFO     | mean x: 1748942457.5
[2025-06-03 13:40:32] 2025-06-03 11:35:38,762 | INFO     | mean y: 2379815.522727273
[2025-06-03 13:40:32] 2025-06-03 11:35:38,763 | INFO     | -- intersect: 19118297956.47505
[2025-06-03 13:40:32] 2025-06-03 11:35:38,763 | INFO     | intersect: 19118297956.47505
[2025-06-03 13:40:32] 2025-06-03 11:35:38,763 | INFO     | chi2: 0.46436877292793705
[2025-06-03 13:40:32] 2025-06-03 11:35:38,763 | INFO     | current chi2=0.46436877292793705 (change=4.813641144630562 %)
[2025-06-03 13:40:32] 2025-06-03 11:35:38,763 | INFO     | left removable region: 20
[2025-06-03 13:40:32] 2025-06-03 11:35:38,764 | INFO     | sum of square deviations: 4729621702.0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,766 | INFO     | sum of deviations: -34411766611.5
[2025-06-03 13:40:32] 2025-06-03 11:35:38,766 | INFO     | mean x: 1748942579.5
[2025-06-03 13:40:32] 2025-06-03 11:35:38,766 | INFO     | mean y: 2366727.9475806453
[2025-06-03 13:40:32] 2025-06-03 11:35:38,766 | INFO     | -- intersect: 12727317612.96633
[2025-06-03 13:40:32] 2025-06-03 11:35:38,766 | INFO     | intersect: 12727317612.96633
[2025-06-03 13:40:32] 2025-06-03 11:35:38,767 | INFO     | chi2: 0.34343220949514247
[2025-06-03 13:40:32] 2025-06-03 11:35:38,767 | INFO     | -- intersect: 12727317612.96633
[2025-06-03 13:40:32] 2025-06-03 11:35:38,767 | INFO     | current memory leak: -7.28 B/s (using 248 data points, chi2=0.34)
[2025-06-03 13:40:32] 2025-06-03 11:35:38,768 | INFO     | ..............................
[2025-06-03 13:40:32] 2025-06-03 11:35:38,768 | INFO     | . Timing measurements:
[2025-06-03 13:40:32] 2025-06-03 11:35:38,768 | INFO     | . get job = 0 s
[2025-06-03 13:40:32] 2025-06-03 11:35:38,768 | INFO     | . initial setup = 1 s
[2025-06-03 13:40:32] 2025-06-03 11:35:38,768 | INFO     | . payload setup = 6 s
[2025-06-03 13:40:32] 2025-06-03 11:35:38,768 | INFO     | . stage-in = 0 s
[2025-06-03 13:40:32] 2025-06-03 11:35:38,769 | INFO     | . payload execution = 16703 s
[2025-06-03 13:40:32] 2025-06-03 11:35:38,769 | INFO     | . stage-out = 1 s
[2025-06-03 13:40:32] 2025-06-03 11:35:38,769 | INFO     | . log creation = 0 s
[2025-06-03 13:40:32] 2025-06-03 11:35:38,769 | INFO     | ..............................
[2025-06-03 13:40:32] 2025-06-03 11:35:38,887 | INFO     | 
[2025-06-03 13:40:32] 2025-06-03 11:35:38,888 | INFO     | job summary report
[2025-06-03 13:40:32] 2025-06-03 11:35:38,888 | INFO     | --------------------------------------------------
[2025-06-03 13:40:32] 2025-06-03 11:35:38,888 | INFO     | PanDA job id: 6667435850
[2025-06-03 13:40:32] 2025-06-03 11:35:38,888 | INFO     | task id: 44871837
[2025-06-03 13:40:32] 2025-06-03 11:35:38,888 | INFO     | errors: (none)
[2025-06-03 13:40:32] 2025-06-03 11:35:38,888 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:40:32] 2025-06-03 11:35:38,888 | INFO     | pilot state: finished 
[2025-06-03 13:40:32] 2025-06-03 11:35:38,888 | INFO     | transexitcode: 0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,888 | INFO     | exeerrorcode: 0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,889 | INFO     | exeerrordiag: 
[2025-06-03 13:40:32] 2025-06-03 11:35:38,889 | INFO     | exitcode: 0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,889 | INFO     | exitmsg: OK
[2025-06-03 13:40:32] 2025-06-03 11:35:38,889 | INFO     | cpuconsumptiontime: 63811 s
[2025-06-03 13:40:32] 2025-06-03 11:35:38,889 | INFO     | nevents: 400
[2025-06-03 13:40:32] 2025-06-03 11:35:38,889 | INFO     | neventsw: 0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,889 | INFO     | pid: 1651259
[2025-06-03 13:40:32] 2025-06-03 11:35:38,890 | INFO     | pgrp: 1651259
[2025-06-03 13:40:32] 2025-06-03 11:35:38,890 | INFO     | corecount: 4
[2025-06-03 13:40:32] 2025-06-03 11:35:38,890 | INFO     | event service: False
[2025-06-03 13:40:32] 2025-06-03 11:35:38,890 | INFO     | sizes: {0: 2404404, 1: 2405271, 5: 2405477, 12: 2405533, 16713: 2437160, 16714: 2437159, 16715: 2446306, 16717: 2446362, 16723: 2446532}
[2025-06-03 13:40:32] 2025-06-03 11:35:38,890 | INFO     | --------------------------------------------------
[2025-06-03 13:40:32] 2025-06-03 11:35:38,890 | INFO     | 
[2025-06-03 13:40:32] 2025-06-03 11:35:38,890 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-06-03 13:40:32] 2025-06-03 11:35:38,910 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,910 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,910 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,910 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,910 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,911 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,911 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,911 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,911 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,911 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,911 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,911 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,911 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,912 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:40:32] 2025-06-03 11:35:38,912 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,912 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:40:32] 2025-06-03 11:35:38,912 | INFO     | job 6667435850 has completed (purged errors)
[2025-06-03 13:40:32] 2025-06-03 11:35:38,913 | INFO     | overall cleanup function is called
[2025-06-03 13:40:32] 2025-06-03 11:35:39,920 | INFO     | --- collectZombieJob: --- 10, [1651259]
[2025-06-03 13:40:32] 2025-06-03 11:35:39,921 | INFO     | zombie collector waiting for pid 1651259
[2025-06-03 13:40:32] 2025-06-03 11:35:39,921 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:40:32] 2025-06-03 11:35:39,921 | INFO     | collected zombie processes
[2025-06-03 13:40:32] 2025-06-03 11:35:39,921 | INFO     | will attempt to kill all subprocesses of pid=1651259
[2025-06-03 13:40:32] 2025-06-03 11:35:40,228 | INFO     | process IDs to be killed: [1651259] (in reverse order)
[2025-06-03 13:40:32] 2025-06-03 11:35:40,305 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:40:32] 2025-06-03 11:35:40,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:40:32] 2025-06-03 11:35:40,314 | INFO     | did not find any defunct processes belonging to 1651259
[2025-06-03 13:40:32] 2025-06-03 11:35:40,322 | INFO     | did not find any defunct processes belonging to 1651259
[2025-06-03 13:40:32] 2025-06-03 11:35:40,323 | INFO     | ready for new job
[2025-06-03 13:40:32] 2025-06-03 11:35:40,323 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:40:32] 2025-06-03 11:35:40,325 | INFO     | **************************************
[2025-06-03 13:40:32] 2025-06-03 11:35:40,325 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:40:32] 2025-06-03 11:35:40,325 | INFO     | **************************************
[2025-06-03 13:40:32] 2025-06-03 11:35:40,325 | INFO     | 
[2025-06-03 13:40:32] 2025-06-03 11:35:40,328 | INFO     | architecture information:
[2025-06-03 13:40:32] 2025-06-03 11:35:40,328 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:40:32] 2025-06-03 11:35:40,340 | INFO     | cat /etc/os-release:
[2025-06-03 13:40:32] NAME="CentOS Linux"
[2025-06-03 13:40:32] VERSION="7 (Core)"
[2025-06-03 13:40:32] ID="centos"
[2025-06-03 13:40:32] ID_LIKE="rhel fedora"
[2025-06-03 13:40:32] VERSION_ID="7"
[2025-06-03 13:40:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:40:32] ANSI_COLOR="0;31"
[2025-06-03 13:40:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:40:32] HOME_URL="https://www.centos.org/"
[2025-06-03 13:40:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:40:32] 
[2025-06-03 13:40:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:40:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:40:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:40:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:40:32] 
[2025-06-03 13:40:32] 2025-06-03 11:35:40,341 | INFO     | **************************************
[2025-06-03 13:40:32] 2025-06-03 11:35:40,844 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-06-03 13:40:32] 2025-06-03 11:35:40,858 | INFO     | sufficient remaining disk space (1650115739648 B)
[2025-06-03 13:40:32] 2025-06-03 11:35:40,858 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:40:32] 2025-06-03 11:35:40,858 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:40:32] 2025-06-03 11:35:40,858 | INFO     | update_server=False
[2025-06-03 13:40:32] 2025-06-03 11:35:40,859 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:40:32] 2025-06-03 11:35:40,859 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:40:32] 2025-06-03 11:35:40,859 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:40:32] 2025-06-03 11:35:40,859 | INFO     | aborting loop
[2025-06-03 13:40:32] 2025-06-03 11:35:41,015 | INFO     | all job control threads have been joined
[2025-06-03 13:40:32] 2025-06-03 11:35:41,338 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:40:32] 2025-06-03 11:35:41,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:40:32] 2025-06-03 11:35:41,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:40:32] 2025-06-03 11:35:41,437 | INFO     | all data control threads have been joined
[2025-06-03 13:40:32] 2025-06-03 11:35:41,668 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:40:32] 2025-06-03 11:35:41,864 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:41,864 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:41,864 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:42,016 | INFO     | [job] control thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:42,026 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:42,040 | INFO     | all payload control threads have been joined
[2025-06-03 13:40:32] 2025-06-03 11:35:42,438 | INFO     | [data] control thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:42,525 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:42,530 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:42,549 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:42,673 | INFO     | [job] validate thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:43,039 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:43,045 | INFO     | [payload] control thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:43,253 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:43,290 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:40:32] 2025-06-03 11:35:43,673 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:47,296 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:51,393 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:40:32] 2025-06-03 11:35:52,398 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:40:32] 2025-06-03 11:35:53,189 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22508156925760)>', '<ExcThread(monitor, started 22507918685952)>']
[2025-06-03 13:40:32] 2025-06-03 11:35:53,398 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:40:32] 2025-06-03 11:35:53,398 | INFO     | [monitor] control thread has ended
[2025-06-03 13:40:32] 2025-06-03 11:35:58,190 | INFO     | all workflow threads have been joined
[2025-06-03 13:40:32] 2025-06-03 11:35:58,190 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:40:32] 2025-06-03 11:35:58,190 | INFO     | traces error code: 0
[2025-06-03 13:40:32] 2025-06-03 11:35:58,191 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:40:32] 2025-06-03 11:35:58,318 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:40:32] 2025-06-03 11:35:58,320 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:40:32] 2025-06-03 11:35:58,322 [wrapper] pilotpid: 1644399
[2025-06-03 13:40:32] 2025-06-03 11:35:58,325 [wrapper] Pilot exit status: 0
[2025-06-03 13:40:32] 2025-06-03 11:35:58,334 [wrapper] pandaids: 6667435850
[2025-06-03 13:40:32] 2025-06-03 11:35:58,385 [wrapper] cleanup supervisor_pilot 1963739 1644400
[2025-06-03 13:40:32] 2025-06-03 11:35:58,387 [wrapper] Test setup, not cleaning
[2025-06-03 13:40:32] 2025-06-03 11:35:58,390 [wrapper] apfmon messages muted
[2025-06-03 13:40:32] 2025-06-03 11:35:58,392 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:40:32] 2025-06-03 11:35:58,394 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:40:32]  *** Error codes and diagnostics ***
[2025-06-03 13:40:32]     "exeErrorCode": 0,
[2025-06-03 13:40:32]     "exeErrorDiag": "",
[2025-06-03 13:40:32]     "pilotErrorCode": 0,
[2025-06-03 13:40:32]     "pilotErrorDiag": "",
[2025-06-03 13:40:32]  *** Listing of results directory ***
[2025-06-03 13:40:32] total 423376
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc    495897 May 27 21:34 pilot3.tar.gz
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc      5111 May 27 21:40 queuedata.json
[2025-06-03 13:40:32] -rwx------ 1 boinc boinc     37140 May 27 21:40 runpilot2-wrapper.sh
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc       100 Jun  3 08:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:40:32] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 08:56 run_atlas
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc       105 Jun  3 08:56 job.xml
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc      6419 Jun  3 08:56 init_data.xml
[2025-06-03 13:40:32] -rw-r--r-- 2 boinc boinc 225753398 Jun  3 08:56 EVNT.44871834._002847.pool.root.1
[2025-06-03 13:40:32] drwxrwx--x 2 boinc boinc      4096 Jun  3 08:56 shared
[2025-06-03 13:40:32] -rw-r--r-- 2 boinc boinc    508877 Jun  3 08:56 input.tar.gz
[2025-06-03 13:40:32] -rw-r--r-- 2 boinc boinc     15093 Jun  3 08:56 start_atlas.sh
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc         0 Jun  3 08:56 boinc_lockfile
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc      2558 Jun  3 08:56 pandaJob.out
[2025-06-03 13:40:32] -rw------- 1 boinc boinc    986901 Jun  3 08:56 agis_schedconf.cvmfs.json
[2025-06-03 13:40:32] drwx------ 4 boinc boinc      4096 Jun  3 08:56 pilot3
[2025-06-03 13:40:32] -rw------- 1 boinc boinc 200153364 Jun  3 13:34 HITS.44871837._072509.pool.root.1
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc       529 Jun  3 13:35 boinc_task_state.xml
[2025-06-03 13:40:32] -rw------- 1 boinc boinc        95 Jun  3 13:35 pilot_heartbeat.json
[2025-06-03 13:40:32] -rw------- 1 boinc boinc      1038 Jun  3 13:35 memory_monitor_summary.json
[2025-06-03 13:40:32] -rw------- 1 boinc boinc   1603667 Jun  3 13:35 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:40:32] -rw------- 1 boinc boinc    347856 Jun  3 13:35 log.44871837._072509.job.log.tgz.1
[2025-06-03 13:40:32] -rw------- 1 boinc boinc      7726 Jun  3 13:35 heartbeat.json
[2025-06-03 13:40:32] -rw------- 1 boinc boinc      4436 Jun  3 13:35 pilotlog.txt
[2025-06-03 13:40:32] -rw------- 1 boinc boinc   1552557 Jun  3 13:35 log.44871837._072509.job.log.1
[2025-06-03 13:40:32] -rw------- 1 boinc boinc       357 Jun  3 13:35 output.list
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc       620 Jun  3 13:35 runtime_log
[2025-06-03 13:40:32] -rw------- 1 boinc boinc   1914880 Jun  3 13:35 result.tar.gz
[2025-06-03 13:40:32] -rw------- 1 boinc boinc       665 Jun  3 13:35 zjdKDmQLFe7n9Rq4apOajLDm4fhM0noT9bVof3QYDmDJSKDmJvFern.diag
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc      9026 Jun  3 13:35 runtime_log.err
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc      8192 Jun  3 13:40 boinc_mmap_file
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc        27 Jun  3 13:40 wrapper_checkpoint.txt
[2025-06-03 13:40:32] -rw-r--r-- 1 boinc boinc     20927 Jun  3 13:40 stderr.txt
[2025-06-03 13:40:32] HITS file was successfully produced:
[2025-06-03 13:40:32] -rw------- 1 boinc boinc 200153364 Jun  3 13:34 shared/HITS.pool.root.1
[2025-06-03 13:40:32]  *** Contents of shared directory: ***
[2025-06-03 13:40:32] total 418320
[2025-06-03 13:40:32] -rw-r--r-- 2 boinc boinc 225753398 Jun  3 08:56 ATLAS.root_0
[2025-06-03 13:40:32] -rw-r--r-- 2 boinc boinc    508877 Jun  3 08:56 input.tar.gz
[2025-06-03 13:40:32] -rw-r--r-- 2 boinc boinc     15093 Jun  3 08:56 start_atlas.sh
[2025-06-03 13:40:32] -rw------- 1 boinc boinc 200153364 Jun  3 13:34 HITS.pool.root.1
[2025-06-03 13:40:32] -rw------- 1 boinc boinc   1914880 Jun  3 13:35 result.tar.gz
13:40:34 (1640807): run_atlas exited; CPU time 64430.497661
13:40:34 (1640807): called boinc_finish(0)

</stderr_txt>
]]>

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