Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:37:46 (2109316): wrapper (7.7.26015): starting
18:37:46 (2109316): wrapper: running run_atlas (--nthreads 8)
[2025-05-27 18:37:46] Arguments: --nthreads 8
[2025-05-27 18:37:46] Threads: 8
[2025-05-27 18:37:46] Checking for CVMFS
[2025-05-27 18:37:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 18:37:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 18:37:46] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 18:37:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 18:37:46] 2.11.3.0 22611 391855 207988 146500 0 211 39991041 45568000 13153 130560 0 1870880406 99.749 1575106000 21161 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-05-27 18:37:46] CVMFS is ok
[2025-05-27 18:37:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-27 18:37:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-27 18:37:46] Further information can be found at the LHC@home message board.
[2025-05-27 18:37:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 18:37:46] Checking for apptainer binary...
[2025-05-27 18:37:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 18:37:46] Running /usr/bin/apptainer --version
[2025-05-27 18:37:46] apptainer version 1.3.3-1.el9
[2025-05-27 18:37:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 18:37:46] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0015.triumf.lcg
[2025-05-27 18:37:46] apptainer works
[2025-05-27 18:37:47] Set ATHENA_PROC_NUMBER=8
[2025-05-27 18:37:47] Set ATHENA_CORE_NUMBER=8
[2025-05-27 18:37:47] Starting ATLAS job with PandaID=6667729897
[2025-05-27 18:37:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 18:41:19]  *** The last 200 lines of the pilot log: ***
[2025-05-27 18:41:20] 2025-05-28 01:41:05,139 | INFO     | extracted standard info from prmon json
[2025-05-27 18:41:20] 2025-05-28 01:41:05,139 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 18:41:20] 2025-05-28 01:41:05,139 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | found no stored workdir sizes
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | INFO     | will not add max space = 0 B to job metrics
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | wrong length of table data, x=[1748396318.0], y=[26483.0] (must be same and length>=4)
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | ..............................
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . Timing measurements:
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . get job = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . initial setup = 3 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . payload setup = 11 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . stage-in = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . payload execution = 25 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . stage-out = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . log creation = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | ..............................
[2025-05-27 18:41:20] 2025-05-28 01:41:05,142 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-27 18:41:20] 2025-05-28 01:41:05,142 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6667729897/pilotlog.txt
[2025-05-27 18:41:20] 2025-05-28 01:41:05,152 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-05-27 18:41:20] - Log from pilotlog.txt -
[2025-05-27 18:41:20] 2025-05-28 01:41:05,139 | INFO     | extracted standard info from prmon json
[2025-05-27 18:41:20] 2025-05-28 01:41:05,139 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 18:41:20] 2025-05-28 01:41:05,139 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | found no stored workdir sizes
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | INFO     | will not add max space = 0 B to job metrics
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | wrong length of table data, x=[1748396318.0], y=[26483.0] (must be same and length>=4)
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | ..............................
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . Timing measurements:
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . get job = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . initial setup = 3 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . payload setup = 11 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . stage-in = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . payload execution = 25 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . stage-out = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . log creation = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | ..............................
[2025-05-27 18:41:20] 2025-05-28 01:41:05,142 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-27 18:41:20] 2025-05-28 01:41:05,142 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6667729897/pilotlog.txt
[2025-05-27 18:41:20] 2025-05-28 01:41:05,153 | WARNING  | 
[2025-05-27 18:41:20] [begin log extracts]
[2025-05-27 18:41:20] - Log from pilotlog.txt -
[2025-05-27 18:41:20] 2025-05-28 01:41:05,139 | INFO     | extracted standard info from prmon json
[2025-05-27 18:41:20] 2025-05-28 01:41:05,139 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 18:41:20] 2025-05-28 01:41:05,139 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | found no stored workdir sizes
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | INFO     | will not add max space = 0 B to job metrics
[2025-05-27 18:41:20] 2025-05-28 01:41:05,140 | WARNING  | wrong length of table data, x=[1748396318.0], y=[26483.0] (must be same and length>=4)
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | ..............................
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . Timing measurements:
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . get job = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . initial setup = 3 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . payload setup = 11 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . stage-in = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . payload execution = 25 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . stage-out = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | . log creation = 0 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,141 | INFO     | ..............................
[2025-05-27 18:41:20] 2025-05-28 01:41:05,142 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-27 18:41:20] 2025-05-28 01:41:05,142 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6667729897/pilotlog.txt
[2025-05-27 18:41:20] [end log extracts]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,153 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-05-27 18:41:20] 2025-05-28 01:41:05,154 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-05-27 18:41:20] 2025-05-28 01:41:05,234 | INFO     | 
[2025-05-27 18:41:20] 2025-05-28 01:41:05,234 | INFO     | job summary report
[2025-05-27 18:41:20] 2025-05-28 01:41:05,234 | INFO     | --------------------------------------------------
[2025-05-27 18:41:20] 2025-05-28 01:41:05,234 | INFO     | PanDA job id: 6667729897
[2025-05-27 18:41:20] 2025-05-28 01:41:05,234 | INFO     | task id: 44871837
[2025-05-27 18:41:20] 2025-05-28 01:41:05,234 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-05-27 18:38:52,077 CRITICAL Transform executor raised TransformValidationExceptio
[2025-05-27 18:41:20] 2025-05-28 01:41:05,234 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | pilot state: failed 
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | transexitcode: 65
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | exeerrorcode: 65
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | exitcode: 65
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | cpuconsumptiontime: 17 s
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | nevents: 0
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | neventsw: 0
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | pid: 2136296
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | pgrp: 2136296
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | corecount: 8
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | event service: False
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | sizes: {0: 2405175, 7: 2405381, 11: 2405409, 40: 2428583, 41: 2432818, 43: 2432846, 166: 2433116}
[2025-05-27 18:41:20] 2025-05-28 01:41:05,235 | INFO     | --------------------------------------------------
[2025-05-27 18:41:20] 2025-05-28 01:41:05,236 | INFO     | 
[2025-05-27 18:41:20] 2025-05-28 01:41:05,236 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-05-27 18:41:20] 2025-05-28 01:41:05,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,250 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,250 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,250 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 18:41:20] 2025-05-28 01:41:05,252 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,252 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 18:41:20] 2025-05-28 01:41:05,252 | INFO     | job 6667729897 has completed (purged errors)
[2025-05-27 18:41:20] 2025-05-28 01:41:05,252 | INFO     | overall cleanup function is called
[2025-05-27 18:41:20] 2025-05-28 01:41:06,258 | INFO     | --- collectZombieJob: --- 10, [2136296]
[2025-05-27 18:41:20] 2025-05-28 01:41:06,258 | INFO     | zombie collector waiting for pid 2136296
[2025-05-27 18:41:20] 2025-05-28 01:41:06,258 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 18:41:20] 2025-05-28 01:41:06,258 | INFO     | collected zombie processes
[2025-05-27 18:41:20] 2025-05-28 01:41:06,259 | INFO     | will attempt to kill all subprocesses of pid=2136296
[2025-05-27 18:41:20] 2025-05-28 01:41:06,463 | INFO     | process IDs to be killed: [2136296] (in reverse order)
[2025-05-27 18:41:20] 2025-05-28 01:41:06,525 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 18:41:20] 2025-05-28 01:41:06,526 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 18:41:20] 2025-05-28 01:41:06,534 | INFO     | did not find any defunct processes belonging to 2136296
[2025-05-27 18:41:20] 2025-05-28 01:41:06,541 | INFO     | did not find any defunct processes belonging to 2136296
[2025-05-27 18:41:20] 2025-05-28 01:41:06,541 | INFO     | ready for new job
[2025-05-27 18:41:20] 2025-05-28 01:41:06,541 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 18:41:20] 2025-05-28 01:41:06,543 | INFO     | **************************************
[2025-05-27 18:41:20] 2025-05-28 01:41:06,543 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 18:41:20] 2025-05-28 01:41:06,543 | INFO     | **************************************
[2025-05-27 18:41:20] 2025-05-28 01:41:06,543 | INFO     | 
[2025-05-27 18:41:20] 2025-05-28 01:41:06,556 | INFO     | architecture information:
[2025-05-27 18:41:20] 2025-05-28 01:41:06,557 | INFO     | executing command: cat /etc/os-release
[2025-05-27 18:41:20] 2025-05-28 01:41:06,569 | INFO     | cat /etc/os-release:
[2025-05-27 18:41:20] NAME="CentOS Linux"
[2025-05-27 18:41:20] VERSION="7 (Core)"
[2025-05-27 18:41:20] ID="centos"
[2025-05-27 18:41:20] ID_LIKE="rhel fedora"
[2025-05-27 18:41:20] VERSION_ID="7"
[2025-05-27 18:41:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 18:41:20] ANSI_COLOR="0;31"
[2025-05-27 18:41:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 18:41:20] HOME_URL="https://www.centos.org/"
[2025-05-27 18:41:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 18:41:20] 
[2025-05-27 18:41:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 18:41:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 18:41:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 18:41:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 18:41:20] 
[2025-05-27 18:41:20] 2025-05-28 01:41:06,569 | INFO     | **************************************
[2025-05-27 18:41:20] 2025-05-28 01:41:07,072 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-05-27 18:41:20] 2025-05-28 01:41:07,085 | INFO     | sufficient remaining disk space (1109338882048 B)
[2025-05-27 18:41:20] 2025-05-28 01:41:07,086 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 18:41:20] 2025-05-28 01:41:07,086 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 18:41:20] 2025-05-28 01:41:07,086 | INFO     | update_server=False
[2025-05-27 18:41:20] 2025-05-28 01:41:07,086 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 18:41:20] 2025-05-28 01:41:07,086 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 18:41:20] 2025-05-28 01:41:07,224 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 18:41:20] 2025-05-28 01:41:07,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 18:41:20] 2025-05-28 01:41:07,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 18:41:20] 2025-05-28 01:41:07,359 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 18:41:20] 2025-05-28 01:41:07,359 | INFO     | aborting loop
[2025-05-27 18:41:20] 2025-05-28 01:41:07,573 | INFO     | all payload control threads have been joined
[2025-05-27 18:41:20] 2025-05-28 01:41:07,585 | INFO     | all data control threads have been joined
[2025-05-27 18:41:20] 2025-05-28 01:41:08,091 | INFO     | [job] retrieve thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:08,092 | INFO     | [job] queue monitor thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:08,201 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:08,265 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 18:41:20] 2025-05-28 01:41:08,365 | INFO     | [job] job monitor thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:08,491 | INFO     | all job control threads have been joined
[2025-05-27 18:41:20] 2025-05-28 01:41:08,579 | INFO     | [payload] control thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:08,590 | INFO     | [data] control thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:08,842 | INFO     | [payload] failed_post thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:08,878 | INFO     | [job] validate thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:09,183 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:09,304 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:09,371 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:09,454 | INFO     | [data] copytool_in thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:09,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 18:41:20] 2025-05-28 01:41:09,497 | INFO     | [job] control thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:09,516 | INFO     | [payload] validate_post thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:10,271 | INFO     | [data] copytool_out thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:13,472 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 18:41:20] 2025-05-28 01:41:14,656 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139895973754688)>', '<ExcThread(monitor, started 139895574083328)>']
[2025-05-27 18:41:20] 2025-05-28 01:41:15,270 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 18:41:20] 2025-05-28 01:41:15,270 | INFO     | [monitor] control thread has ended
[2025-05-27 18:41:20] 2025-05-28 01:41:19,686 | INFO     | all workflow threads have been joined
[2025-05-27 18:41:20] 2025-05-28 01:41:19,686 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 18:41:20] 2025-05-28 01:41:19,687 | INFO     | traces error code: 0
[2025-05-27 18:41:20] 2025-05-28 01:41:19,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 18:41:20] 2025-05-28 01:41:19,834 [wrapper] ==== pilot stdout END ====
[2025-05-27 18:41:20] 2025-05-28 01:41:19,836 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 18:41:20] 2025-05-28 01:41:19,840 [wrapper] pilotpid: 2116674
[2025-05-27 18:41:20] 2025-05-28 01:41:19,843 [wrapper] Pilot exit status: 0
[2025-05-27 18:41:20] 2025-05-28 01:41:19,855 [wrapper] pandaids: 6667729897
[2025-05-27 18:41:20] 2025-05-28 01:41:19,897 [wrapper] cleanup supervisor_pilot 2116681 2116675
[2025-05-27 18:41:20] 2025-05-28 01:41:19,900 [wrapper] Test setup, not cleaning
[2025-05-27 18:41:20] 2025-05-28 01:41:19,902 [wrapper] apfmon messages muted
[2025-05-27 18:41:20] 2025-05-28 01:41:19,904 [wrapper] ==== wrapper stdout END ====
[2025-05-27 18:41:20] 2025-05-28 01:41:19,906 [wrapper] ==== wrapper stderr END ====
[2025-05-27 18:41:20]  *** Error codes and diagnostics ***
[2025-05-27 18:41:20]     "exeErrorCode": 65,
[2025-05-27 18:41:20]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-05-27 18:41:20]     "pilotErrorCode": 1305,
[2025-05-27 18:41:20]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-05-27 18:41:20]  *** Listing of results directory ***
[2025-05-27 18:41:20] total 223604
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc    495897 May 27 15:42 pilot3.tar.gz
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc      5111 May 27 16:01 queuedata.json
[2025-05-27 18:41:20] -rwx------. 1 boinc boinc     37140 May 27 16:02 runpilot2-wrapper.sh
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc       100 May 27 18:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 18:41:20] -rwxr-xr-x. 1 boinc boinc      7986 May 27 18:37 run_atlas
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc       105 May 27 18:37 job.xml
[2025-05-27 18:41:20] -rw-r--r--. 2 boinc boinc 224937227 May 27 18:37 EVNT.44871834._001537.pool.root.1
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc      6453 May 27 18:37 init_data.xml
[2025-05-27 18:41:20] -rw-r--r--. 2 boinc boinc     15093 May 27 18:37 start_atlas.sh
[2025-05-27 18:41:20] drwxrwx--x. 2 boinc boinc      4096 May 27 18:37 shared
[2025-05-27 18:41:20] -rw-r--r--. 2 boinc boinc    508889 May 27 18:37 input.tar.gz
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc         0 May 27 18:37 boinc_lockfile
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc      2556 May 27 18:37 pandaJob.out
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc    991169 May 27 18:37 agis_schedconf.cvmfs.json
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc   1603667 May 27 18:37 agis_ddmendpoints.agis.ALL.json
[2025-05-27 18:41:20] drwx------. 4 boinc boinc      4096 May 27 18:38 pilot3
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc       522 May 27 18:38 boinc_task_state.xml
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc       978 May 27 18:38 memory_monitor_summary.json
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc     20529 May 27 18:38 log.44871837._074709.job.log.tgz.1
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc        95 May 27 18:41 pilot_heartbeat.json
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc      8329 May 27 18:41 heartbeat.json
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc      4352 May 27 18:41 pilotlog.txt
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc      8192 May 27 18:41 boinc_mmap_file
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc        22 May 27 18:41 wrapper_checkpoint.txt
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc     74678 May 27 18:41 log.44871837._074709.job.log.1
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc       188 May 27 18:41 output.list
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc       620 May 27 18:41 runtime_log
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc    112640 May 27 18:41 result.tar.gz
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc      8647 May 27 18:41 runtime_log.err
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc       644 May 27 18:41 kt5NDmPUIe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnaaKDmJ6c0nm.diag
[2025-05-27 18:41:20] -rw-r--r--. 1 boinc boinc     21605 May 27 18:41 stderr.txt
[2025-05-27 18:41:20] No HITS result produced
[2025-05-27 18:41:20]  *** Contents of shared directory: ***
[2025-05-27 18:41:20] total 220300
[2025-05-27 18:41:20] -rw-r--r--. 2 boinc boinc 224937227 May 27 18:37 ATLAS.root_0
[2025-05-27 18:41:20] -rw-r--r--. 2 boinc boinc     15093 May 27 18:37 start_atlas.sh
[2025-05-27 18:41:20] -rw-r--r--. 2 boinc boinc    508889 May 27 18:37 input.tar.gz
[2025-05-27 18:41:20] -rw-------. 1 boinc boinc    112640 May 27 18:41 result.tar.gz
18:41:21 (2109316): run_atlas exited; CPU time 23.088931
18:41:21 (2109316): called boinc_finish(0)

</stderr_txt>
]]>

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