Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:33:11 (1385307): wrapper (7.7.26015): starting
16:33:11 (1385307): wrapper: running run_atlas (--nthreads 12)
[2025-05-27 16:33:11] Arguments: --nthreads 12
[2025-05-27 16:33:11] Threads: 12
[2025-05-27 16:33:11] Checking for CVMFS
[2025-05-27 16:33:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 16:33:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 16:33:11] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 16:33:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 16:33:11] 2.11.5.0 4147171 13043 235192 146498 2 227 41699008 45568001 19098 130560 0 140650948 99.801 79091725 25554 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-05-27 16:33:11] CVMFS is ok
[2025-05-27 16:33:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-27 16:33:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-27 16:33:11] Further information can be found at the LHC@home message board.
[2025-05-27 16:33:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 16:33:11] Checking for apptainer binary...
[2025-05-27 16:33:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 16:33:11] Running /usr/bin/apptainer --version
[2025-05-27 16:33:11] apptainer version 1.4.0-1.el9
[2025-05-27 16:33:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 16:33:12] wns0047.triumf.lcg
[2025-05-27 16:33:12] apptainer works
[2025-05-27 16:33:12] Set ATHENA_PROC_NUMBER=12
[2025-05-27 16:33:12] Set ATHENA_CORE_NUMBER=12
[2025-05-27 16:33:12] Starting ATLAS job with PandaID=6667580320
[2025-05-27 16:33:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 16:36:39]  *** The last 200 lines of the pilot log: ***
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | INFO     | extracted standard info from prmon json
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | WARNING  | found no stored workdir sizes
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | will not add max space = 0 B to job metrics
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | WARNING  | wrong length of table data, x=[1748388838.0], y=[988.0] (must be same and length>=4)
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | ..............................
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | . Timing measurements:
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | . get job = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | . initial setup = 3 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . payload setup = 7 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . stage-in = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . payload execution = 28 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . stage-out = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . log creation = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | ..............................
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6667580320/pilotlog.txt
[2025-05-27 16:36:39] 2025-05-27 23:36:26,589 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-05-27 16:36:39] - Log from pilotlog.txt -
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | INFO     | extracted standard info from prmon json
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | WARNING  | found no stored workdir sizes
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | will not add max space = 0 B to job metrics
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | WARNING  | wrong length of table data, x=[1748388838.0], y=[988.0] (must be same and length>=4)
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | ..............................
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | . Timing measurements:
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | . get job = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | . initial setup = 3 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . payload setup = 7 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . stage-in = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . payload execution = 28 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . stage-out = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . log creation = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | ..............................
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6667580320/pilotlog.txt
[2025-05-27 16:36:39] 2025-05-27 23:36:26,589 | WARNING  | 
[2025-05-27 16:36:39] [begin log extracts]
[2025-05-27 16:36:39] - Log from pilotlog.txt -
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | INFO     | extracted standard info from prmon json
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 16:36:39] 2025-05-27 23:36:26,570 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | WARNING  | found no stored workdir sizes
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | will not add max space = 0 B to job metrics
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | WARNING  | wrong length of table data, x=[1748388838.0], y=[988.0] (must be same and length>=4)
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | ..............................
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | . Timing measurements:
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | . get job = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,571 | INFO     | . initial setup = 3 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . payload setup = 7 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . stage-in = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . payload execution = 28 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . stage-out = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | . log creation = 0 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | ..............................
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-27 16:36:39] 2025-05-27 23:36:26,572 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6667580320/pilotlog.txt
[2025-05-27 16:36:39] [end log extracts]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,589 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-05-27 16:36:39] 2025-05-27 23:36:26,590 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-05-27 16:36:39] 2025-05-27 23:36:26,895 | INFO     | 
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | job summary report
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | --------------------------------------------------
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | PanDA job id: 6667580320
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | task id: 44871837
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-05-27 16:34:14,499 CRITICAL Transform executor raised TransformValidationExceptio
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | pilot state: failed 
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | transexitcode: 65
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | exeerrorcode: 65
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | exitcode: 65
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | cpuconsumptiontime: 15 s
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | nevents: 0
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | neventsw: 0
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | pid: 1397783
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | pgrp: 1397783
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | corecount: 12
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | event service: False
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | sizes: {0: 2405059, 1: 2405258, 8: 2405464, 12: 2405492, 39: 2428645, 40: 2428621, 41: 2433012, 42: 2433040, 164: 2433210}
[2025-05-27 16:36:39] 2025-05-27 23:36:26,896 | INFO     | --------------------------------------------------
[2025-05-27 16:36:39] 2025-05-27 23:36:26,897 | INFO     | 
[2025-05-27 16:36:39] 2025-05-27 23:36:26,897 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,911 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,912 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,912 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,912 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,912 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,912 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 16:36:39] 2025-05-27 23:36:26,912 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,912 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 16:36:39] 2025-05-27 23:36:26,912 | INFO     | job 6667580320 has completed (purged errors)
[2025-05-27 16:36:39] 2025-05-27 23:36:26,912 | INFO     | overall cleanup function is called
[2025-05-27 16:36:39] 2025-05-27 23:36:27,919 | INFO     | --- collectZombieJob: --- 10, [1397783]
[2025-05-27 16:36:39] 2025-05-27 23:36:27,919 | INFO     | zombie collector waiting for pid 1397783
[2025-05-27 16:36:39] 2025-05-27 23:36:27,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 16:36:39] 2025-05-27 23:36:27,920 | INFO     | collected zombie processes
[2025-05-27 16:36:39] 2025-05-27 23:36:27,920 | INFO     | will attempt to kill all subprocesses of pid=1397783
[2025-05-27 16:36:39] 2025-05-27 23:36:28,374 | INFO     | process IDs to be killed: [1397783] (in reverse order)
[2025-05-27 16:36:39] 2025-05-27 23:36:28,462 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 16:36:39] 2025-05-27 23:36:28,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 16:36:39] 2025-05-27 23:36:28,471 | INFO     | did not find any defunct processes belonging to 1397783
[2025-05-27 16:36:39] 2025-05-27 23:36:28,478 | INFO     | did not find any defunct processes belonging to 1397783
[2025-05-27 16:36:39] 2025-05-27 23:36:28,479 | INFO     | ready for new job
[2025-05-27 16:36:39] 2025-05-27 23:36:28,479 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 16:36:39] 2025-05-27 23:36:28,480 | INFO     | **************************************
[2025-05-27 16:36:39] 2025-05-27 23:36:28,480 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 16:36:39] 2025-05-27 23:36:28,480 | INFO     | **************************************
[2025-05-27 16:36:39] 2025-05-27 23:36:28,480 | INFO     | 
[2025-05-27 16:36:39] 2025-05-27 23:36:28,482 | INFO     | architecture information:
[2025-05-27 16:36:39] 2025-05-27 23:36:28,483 | INFO     | executing command: cat /etc/os-release
[2025-05-27 16:36:39] 2025-05-27 23:36:28,492 | INFO     | cat /etc/os-release:
[2025-05-27 16:36:39] NAME="CentOS Linux"
[2025-05-27 16:36:39] VERSION="7 (Core)"
[2025-05-27 16:36:39] ID="centos"
[2025-05-27 16:36:39] ID_LIKE="rhel fedora"
[2025-05-27 16:36:39] VERSION_ID="7"
[2025-05-27 16:36:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 16:36:39] ANSI_COLOR="0;31"
[2025-05-27 16:36:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 16:36:39] HOME_URL="https://www.centos.org/"
[2025-05-27 16:36:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 16:36:39] 
[2025-05-27 16:36:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 16:36:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 16:36:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 16:36:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 16:36:39] 
[2025-05-27 16:36:39] 2025-05-27 23:36:28,492 | INFO     | **************************************
[2025-05-27 16:36:39] 2025-05-27 23:36:28,995 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-05-27 16:36:39] 2025-05-27 23:36:29,077 | INFO     | sufficient remaining disk space (1718286811136 B)
[2025-05-27 16:36:39] 2025-05-27 23:36:29,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 16:36:39] 2025-05-27 23:36:29,077 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 16:36:39] 2025-05-27 23:36:29,077 | INFO     | update_server=False
[2025-05-27 16:36:39] 2025-05-27 23:36:29,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 16:36:39] 2025-05-27 23:36:29,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 16:36:39] 2025-05-27 23:36:29,150 | INFO     | all job control threads have been joined
[2025-05-27 16:36:39] 2025-05-27 23:36:29,473 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 16:36:39] 2025-05-27 23:36:29,473 | INFO     | aborting loop
[2025-05-27 16:36:39] 2025-05-27 23:36:29,617 | INFO     | all data control threads have been joined
[2025-05-27 16:36:39] 2025-05-27 23:36:29,663 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 16:36:39] 2025-05-27 23:36:29,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 16:36:39] 2025-05-27 23:36:29,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 16:36:39] 2025-05-27 23:36:29,973 | INFO     | all payload control threads have been joined
[2025-05-27 16:36:39] 2025-05-27 23:36:30,082 | INFO     | [job] retrieve thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:30,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 16:36:39] 2025-05-27 23:36:30,154 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:30,156 | INFO     | [job] control thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:30,259 | INFO     | [payload] validate_post thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:30,471 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:30,480 | INFO     | [job] job monitor thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:30,622 | INFO     | [data] control thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:30,734 | INFO     | [payload] failed_post thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:30,925 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:30,979 | INFO     | [payload] control thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:31,221 | INFO     | [job] validate thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:31,397 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:31,500 | INFO     | [data] copytool_in thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:31,664 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 16:36:39] 2025-05-27 23:36:32,099 | INFO     | [data] copytool_out thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:32,670 | INFO     | [job] queue monitor thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:33,087 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 16:36:39] 2025-05-27 23:36:33,880 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140441285396288)>', '<ExcThread(monitor, started 140440514844416)>']
[2025-05-27 16:36:39] 2025-05-27 23:36:34,693 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 16:36:39] 2025-05-27 23:36:34,693 | INFO     | [monitor] control thread has ended
[2025-05-27 16:36:39] 2025-05-27 23:36:38,907 | INFO     | all workflow threads have been joined
[2025-05-27 16:36:39] 2025-05-27 23:36:38,907 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 16:36:39] 2025-05-27 23:36:38,907 | INFO     | traces error code: 0
[2025-05-27 16:36:39] 2025-05-27 23:36:38,908 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 16:36:39] 2025-05-27 23:36:39,080 [wrapper] ==== pilot stdout END ====
[2025-05-27 16:36:39] 2025-05-27 23:36:39,082 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 16:36:39] 2025-05-27 23:36:39,089 [wrapper] pilotpid: 1389030
[2025-05-27 16:36:39] 2025-05-27 23:36:39,095 [wrapper] Pilot exit status: 0
[2025-05-27 16:36:39] 2025-05-27 23:36:39,108 [wrapper] pandaids: 6667580320
[2025-05-27 16:36:39] 2025-05-27 23:36:39,172 [wrapper] cleanup supervisor_pilot 1389036 1389031
[2025-05-27 16:36:39] 2025-05-27 23:36:39,175 [wrapper] Test setup, not cleaning
[2025-05-27 16:36:39] 2025-05-27 23:36:39,177 [wrapper] apfmon messages muted
[2025-05-27 16:36:39] 2025-05-27 23:36:39,179 [wrapper] ==== wrapper stdout END ====
[2025-05-27 16:36:39] 2025-05-27 23:36:39,181 [wrapper] ==== wrapper stderr END ====
[2025-05-27 16:36:39]  *** Error codes and diagnostics ***
[2025-05-27 16:36:39]     "exeErrorCode": 65,
[2025-05-27 16:36:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-05-27 16:36:39]     "pilotErrorCode": 1305,
[2025-05-27 16:36:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-05-27 16:36:39]  *** Listing of results directory ***
[2025-05-27 16:36:39] total 224076
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc    495897 May 27 12:34 pilot3.tar.gz
[2025-05-27 16:36:39] -rwx------. 1 boinc boinc     37140 May 27 13:36 runpilot2-wrapper.sh
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc      5111 May 27 13:36 queuedata.json
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc       100 May 27 16:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 16:36:39] -rwxr-xr-x. 1 boinc boinc      7986 May 27 16:33 run_atlas
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc       105 May 27 16:33 job.xml
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc      6602 May 27 16:33 init_data.xml
[2025-05-27 16:36:39] -rw-r--r--. 2 boinc boinc 225423140 May 27 16:33 EVNT.44871834._002867.pool.root.1
[2025-05-27 16:36:39] -rw-r--r--. 2 boinc boinc     15093 May 27 16:33 start_atlas.sh
[2025-05-27 16:36:39] drwxrwx--x. 2 boinc boinc      4096 May 27 16:33 shared
[2025-05-27 16:36:39] -rw-r--r--. 2 boinc boinc    508873 May 27 16:33 input.tar.gz
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc         0 May 27 16:33 boinc_lockfile
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc      2558 May 27 16:33 pandaJob.out
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc    991177 May 27 16:33 agis_schedconf.cvmfs.json
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc   1603667 May 27 16:33 agis_ddmendpoints.agis.ALL.json
[2025-05-27 16:36:39] drwx------. 4 boinc boinc      4096 May 27 16:33 pilot3
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc       979 May 27 16:34 memory_monitor_summary.json
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc     20532 May 27 16:34 log.44871837._073104.job.log.tgz.1
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc       522 May 27 16:34 boinc_task_state.xml
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc        95 May 27 16:36 pilot_heartbeat.json
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc      8311 May 27 16:36 heartbeat.json
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc        22 May 27 16:36 wrapper_checkpoint.txt
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc      8192 May 27 16:36 boinc_mmap_file
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc      4352 May 27 16:36 pilotlog.txt
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc     73951 May 27 16:36 log.44871837._073104.job.log.1
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc       188 May 27 16:36 output.list
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc       620 May 27 16:36 runtime_log
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc    112640 May 27 16:36 result.tar.gz
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc       645 May 27 16:36 sWcMDmlDGe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCLaKDmaESGXm.diag
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc      8484 May 27 16:36 runtime_log.err
[2025-05-27 16:36:39] -rw-r--r--. 1 boinc boinc     21460 May 27 16:36 stderr.txt
[2025-05-27 16:36:39] No HITS result produced
[2025-05-27 16:36:39]  *** Contents of shared directory: ***
[2025-05-27 16:36:39] total 220772
[2025-05-27 16:36:39] -rw-r--r--. 2 boinc boinc 225423140 May 27 16:33 ATLAS.root_0
[2025-05-27 16:36:39] -rw-r--r--. 2 boinc boinc     15093 May 27 16:33 start_atlas.sh
[2025-05-27 16:36:39] -rw-r--r--. 2 boinc boinc    508873 May 27 16:33 input.tar.gz
[2025-05-27 16:36:39] -rw-------. 1 boinc boinc    112640 May 27 16:36 result.tar.gz
16:36:40 (1385307): run_atlas exited; CPU time 21.156301
16:36:40 (1385307): called boinc_finish(0)

</stderr_txt>
]]>

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