Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-28 06:36:45 (31596): Detected: vboxwrapper 26206
2025-05-28 06:36:45 (31596): Detected: BOINC client v8.0.2
2025-05-28 06:36:45 (31596): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-05-28 06:36:46 (31596): Successfully copied 'init_data.xml' to the shared directory.
2025-05-28 06:36:46 (31596): Create VM. (boinc_3a1375370ac14bff, slot#0)
2025-05-28 06:36:47 (31596): Setting Memory Size for VM. (4800MB)
2025-05-28 06:36:47 (31596): Setting CPU Count for VM. (8)
2025-05-28 06:36:47 (31596): Setting Chipset Options for VM.
2025-05-28 06:36:48 (31596): Setting Graphics Controller Options for VM.
2025-05-28 06:36:48 (31596): Setting Boot Options for VM.
2025-05-28 06:36:48 (31596): Setting Network Configuration for NAT.
2025-05-28 06:36:48 (31596): Enabling VM Network Access.
2025-05-28 06:36:49 (31596): Disabling USB Support for VM.
2025-05-28 06:36:49 (31596): Disabling COM Port Support for VM.
2025-05-28 06:36:49 (31596): Disabling LPT Port Support for VM.
2025-05-28 06:36:49 (31596): Disabling Audio Support for VM.
2025-05-28 06:36:50 (31596): Disabling Clipboard Support for VM.
2025-05-28 06:36:50 (31596): Disabling Drag and Drop Support for VM.
2025-05-28 06:36:50 (31596): Adding storage controller(s) to VM.
2025-05-28 06:36:51 (31596): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-28 06:36:54 (31596): Adding VirtualBox Guest Additions to VM.
2025-05-28 06:36:54 (31596): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-28 06:36:54 (31596): forwarding host port 59205 to guest port 80
2025-05-28 06:36:55 (31596): Enabling remote desktop for VM.
2025-05-28 06:36:55 (31596): Required extension pack not installed, remote desktop not enabled.
2025-05-28 06:36:55 (31596): Enabling shared directory for VM.
2025-05-28 06:36:55 (31596): Starting VM using VBoxManage interface. (boinc_3a1375370ac14bff, slot#0)
2025-05-28 06:37:01 (31596): Successfully started VM. (PID = '30336')
2025-05-28 06:37:01 (31596): Reporting VM Process ID to BOINC.
2025-05-28 06:37:01 (31596): Guest Log: BIOS: VirtualBox 7.0.6
2025-05-28 06:37:01 (31596): Guest Log: CPUID EDX: 0x178bfbff
2025-05-28 06:37:01 (31596): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-28 06:37:01 (31596): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000006e8e140 sectors
2025-05-28 06:37:01 (31596): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-28 06:37:01 (31596): Detected: Web Application Enabled (http://localhost:59205)
2025-05-28 06:37:01 (31596): Preference change detected
2025-05-28 06:37:01 (31596): Setting CPU throttle for VM. (100%)
2025-05-28 06:37:01 (31596): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-28 06:37:03 (31596): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-28 06:37:03 (31596): Guest Log: BIOS: Booting from Hard Disk...
2025-05-28 06:37:06 (31596): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-28 06:37:06 (31596): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-28 06:37:06 (31596): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-28 06:37:17 (31596): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-28 06:37:17 (31596): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-28 06:37:26 (31596): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-28 06:37:26 (31596): Guest Log: 00:00:00.000129 main     Log opened 2025-05-28T06:37:24.137898000Z
2025-05-28 06:37:26 (31596): Guest Log: 00:00:00.000201 main     OS Product: Linux
2025-05-28 06:37:26 (31596): Guest Log: 00:00:00.000229 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-28 06:37:26 (31596): Guest Log: 00:00:00.000251 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-28 06:37:26 (31596): Guest Log: 00:00:00.000272 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-28 06:37:26 (31596): Guest Log: 00:00:00.000272 main     Process ID: 1366
2025-05-28 06:37:26 (31596): Guest Log: 00:00:00.000273 main     Package type: LINUX_64BITS_GENERIC
2025-05-28 06:37:26 (31596): Guest Log: 00:00:00.000926 main     5.2.32 r132073 started. Verbose level = 0
2025-05-28 06:37:26 (31596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-28 06:37:26 (31596): Guest Log: [INFO] Mounting shared directory
2025-05-28 06:37:26 (31596): Guest Log: [INFO] Checking for init_data.xml
2025-05-28 06:37:36 (31596): Guest Log: 00:00:10.030292 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 302 244 000ns (GuestNow=1 748 410 655 837 354 000 ns GuestLast=1 748 414 244 139 598 000 ns fSetTimeLastLoop=true )
2025-05-28 06:37:53 (31596): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-28 06:37:53 (31596): Guest Log: [INFO] Detected branch: prod
2025-05-28 06:37:55 (31596): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-28 06:37:55 (31596): Guest Log: Copying input files
2025-05-28 06:37:56 (31596): Guest Log: Copied input files into RunAtlas.
2025-05-28 06:37:56 (31596): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-28 06:37:56 (31596): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-28 06:37:56 (31596): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-28 06:37:56 (31596): Guest Log: Further information can be found at the LHC@home message board.
2025-05-28 06:38:14 (31596): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-28 06:38:15 (31596): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-28 06:38:15 (31596): Guest Log: 2.6.3.0 1651 0 32040 146507 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-28 06:38:18 (31596): Guest Log: copied the webapp to /var/www
2025-05-28 06:38:18 (31596): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-28 06:38:18 (31596): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-28 06:38:20 (31596): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-28 06:38:20 (31596): Guest Log:  *** Starting ATLAS job. (PandaID=6667365885 taskID=44871837) ***
2025-05-28 08:25:07 (31596): Status Report: Elapsed Time: '6000.518789'
2025-05-28 08:25:07 (31596): Status Report: CPU Time: '46625.142077'
2025-05-28 08:33:29 (31596): Guest Log:  *** Job finished ***
2025-05-28 08:33:29 (31596): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:19,538 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:20,539 | INFO     | [job] queue monitor thread has finished
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:22,881 | INFO     | [data] queue_monitor thread has finished
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:23,234 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140192835258176)>', '<ExcThread(monitor, started 140192019113728)>']
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:23,760 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:23,761 | INFO     | [monitor] control thread has ended
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,251 | INFO     | all workflow threads have been joined
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,252 | INFO     | end of generic workflow (traces error code: 0)
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,253 | INFO     | traces error code: 0
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,368 [wrapper] ==== pilot stdout END ====
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,371 [wrapper] ==== wrapper stdout RESUME ====
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,374 [wrapper] pilotpid: 6001
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,377 [wrapper] Pilot exit status: 0
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,482 [wrapper] pandaids: 6667365885
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,529 [wrapper] cleanup supervisor_pilot  2878 6002
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,534 [wrapper] Test setup, not cleaning
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,538 [wrapper] apfmon messages muted
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,542 [wrapper] ==== wrapper stdout END ====
2025-05-28 08:33:29 (31596): Guest Log: 2025-05-28 07:33:28,546 [wrapper] ==== wrapper stderr END ====
2025-05-28 08:33:29 (31596): Guest Log:  *** Error codes and diagnostics ***
2025-05-28 08:33:29 (31596): Guest Log:     "exeErrorCode": 0,
2025-05-28 08:33:29 (31596): Guest Log:     "exeErrorDiag": "",
2025-05-28 08:33:29 (31596): Guest Log:     "pilotErrorCode": 0,
2025-05-28 08:33:29 (31596): Guest Log:     "pilotErrorDiag": "",
2025-05-28 08:33:29 (31596): Guest Log:  *** Listing of results directory ***
2025-05-28 08:33:29 (31596): Guest Log: total 192760
2025-05-28 08:33:29 (31596): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 16:39 pilot3.tar.gz
2025-05-28 08:33:29 (31596): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 17:35 queuedata.json
2025-05-28 08:33:29 (31596): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 17:39 runpilot2-wrapper.sh
2025-05-28 08:33:29 (31596): Guest Log: -rwxr-xr-x. 1 atlas atlas      8984 May 28 05:37 init_data.xml
2025-05-28 08:33:29 (31596): Guest Log: -rwxr-xr-x. 1 atlas atlas    508885 May 28 05:37 input.tar.gz
2025-05-28 08:33:29 (31596): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 28 05:37 start_atlas.sh
2025-05-28 08:33:29 (31596): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 28 05:37 EVNT.44871834._002792.pool.root.1 -> /data/./ATLAS.root_0
2025-05-28 08:33:29 (31596): Guest Log: -rw-r--r--. 1 atlas atlas      2559 May 28 05:38 pandaJob.out
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas    991177 May 28 05:39 agis_schedconf.cvmfs.json
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas   1603667 May 28 05:39 agis_ddmendpoints.agis.ALL.json
2025-05-28 08:33:29 (31596): Guest Log: drwx------. 4 atlas atlas      4096 May 28 05:39 pilot3
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas        95 May 28 07:32 pilot_heartbeat.json
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas 191854947 May 28 07:32 HITS.44871837._071084.pool.root.1
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas      1031 May 28 07:32 memory_monitor_summary.json
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas    322294 May 28 07:33 log.44871837._071084.job.log.tgz.1
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas      7724 May 28 07:33 heartbeat.json
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas      4536 May 28 07:33 pilotlog.txt
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas    557831 May 28 07:33 log.44871837._071084.job.log.1
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas       357 May 28 07:33 output.list
2025-05-28 08:33:29 (31596): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 28 07:33 runtime_log
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas    901120 May 28 07:33 result.tar.gz
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas       654 May 28 07:33 WsYMDmWSDe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmj0ZKDmKTiain.diag
2025-05-28 08:33:29 (31596): Guest Log: -rw-r--r--. 1 atlas atlas      8595 May 28 07:33 runtime_log.err
2025-05-28 08:33:29 (31596): Guest Log: Looking for outputfile HITS.44871837._071084.pool.root.1
2025-05-28 08:33:29 (31596): Guest Log: HITS file was successfully produced
2025-05-28 08:33:29 (31596): Guest Log: -rw-------. 1 atlas atlas 191854947 May 28 07:32 /home/atlas/RunAtlas/HITS.44871837._071084.pool.root.1
2025-05-28 08:33:29 (31596): Guest Log: Successfully finished the ATLAS job!
2025-05-28 08:33:29 (31596): Guest Log: Copying the results back to the shared directory!
2025-05-28 08:33:29 (31596): Guest Log:  *** Contents of shared directory: ***
2025-05-28 08:33:29 (31596): Guest Log: total 405792
2025-05-28 08:33:29 (31596): Guest Log: -rwxrwxrwx. 1 root root 222229201 May 28 05:36 ATLAS.root_0
2025-05-28 08:33:29 (31596): Guest Log: -rwxrwxrwx. 1 root root 191854947 May 28 07:33 HITS.pool.root.1
2025-05-28 08:33:29 (31596): Guest Log: -rwxrwxrwx. 1 root root      8984 May 28 05:36 init_data.xml
2025-05-28 08:33:29 (31596): Guest Log: -rwxrwxrwx. 1 root root    508885 May 27 23:46 input.tar.gz
2025-05-28 08:33:29 (31596): Guest Log: -rwxrwxrwx. 1 root root    901120 May 28 07:33 result.tar.gz
2025-05-28 08:33:29 (31596): Guest Log: -rwxrwxrwx. 1 root root     15093 May 27 23:46 start_atlas.sh
2025-05-28 08:33:29 (31596): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-28 08:33:29 (31596): VM Completion File Detected.
2025-05-28 08:33:29 (31596): Powering off VM.
2025-05-28 08:33:30 (31596): Successfully stopped VM.
2025-05-28 08:33:30 (31596): Deregistering VM. (boinc_3a1375370ac14bff, slot#0)
2025-05-28 08:33:30 (31596): Removing network bandwidth throttle group from VM.
2025-05-28 08:33:30 (31596): Removing VM from VirtualBox.
08:33:35 (31596): called boinc_finish(0)

</stderr_txt>
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