Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
01:00:08 (980129): wrapper (7.7.26015): starting
01:00:08 (980129): wrapper: running run_atlas (--nthreads 12)
[2025-05-28 01:00:08] Arguments: --nthreads 12
[2025-05-28 01:00:08] Threads: 12
[2025-05-28 01:00:08] Checking for CVMFS
[2025-05-28 01:00:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 01:00:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 01:00:09] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 01:00:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 01:00:11] 2.12.7.0 39975 5357 179112 146499 3 187 3625136 4096000 14914 130560 0 55061941 99.999 1388123 935 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.230:3128 1
[2025-05-28 01:00:11] CVMFS is ok
[2025-05-28 01:00:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 01:00:11] Checking for apptainer binary...
[2025-05-28 01:00:11] apptainer is not installed, using version from CVMFS
[2025-05-28 01:00:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 01:00:12] epyc7v12
[2025-05-28 01:00:12] apptainer works
[2025-05-28 01:00:12] Set ATHENA_PROC_NUMBER=12
[2025-05-28 01:00:12] Set ATHENA_CORE_NUMBER=12
[2025-05-28 01:00:13] Starting ATLAS job with PandaID=6667098652
[2025-05-28 01:00:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 03:42:06]  *** The last 200 lines of the pilot log: ***
[2025-05-28 03:42:06] 2025-05-28 03:41:45,942 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 03:42:06] 2025-05-28 03:41:45,942 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 03:42:06] 2025-05-28 03:41:45,942 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 03:42:06] 2025-05-28 03:41:45,942 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 03:42:06] 2025-05-28 03:41:45,946 | INFO     | fitting pss+swap vs Time
[2025-05-28 03:42:06] 2025-05-28 03:41:45,946 | INFO     | sum of square deviations: 1067547096.834439
[2025-05-28 03:42:06] 2025-05-28 03:41:45,947 | INFO     | sum of deviations: 72497378365.72841
[2025-05-28 03:42:06] 2025-05-28 03:41:45,947 | INFO     | mean x: 1748399046.0331125
[2025-05-28 03:42:06] 2025-05-28 03:41:45,948 | INFO     | mean y: 2529033.854304636
[2025-05-28 03:42:06] 2025-05-28 03:41:45,948 | INFO     | -- intersect: -118731667846.45335
[2025-05-28 03:42:06] 2025-05-28 03:41:45,948 | INFO     | intersect: -118731667846.45335
[2025-05-28 03:42:06] 2025-05-28 03:41:45,949 | INFO     | chi2: 5.92518570485777
[2025-05-28 03:42:06] 2025-05-28 03:41:45,949 | INFO     | sum of square deviations: 964969954.3287656
[2025-05-28 03:42:06] 2025-05-28 03:41:45,950 | INFO     | sum of deviations: 80056341735.9726
[2025-05-28 03:42:06] 2025-05-28 03:41:45,950 | INFO     | mean x: 1748398893.5342467
[2025-05-28 03:42:06] 2025-05-28 03:41:45,950 | INFO     | mean y: 2539857.705479452
[2025-05-28 03:42:06] 2025-05-28 03:41:45,950 | INFO     | -- intersect: -145049043027.0048
[2025-05-28 03:42:06] 2025-05-28 03:41:45,950 | INFO     | intersect: -145049043027.0048
[2025-05-28 03:42:06] 2025-05-28 03:41:45,951 | INFO     | chi2: 5.229780766976106
[2025-05-28 03:42:06] 2025-05-28 03:41:45,951 | INFO     | current chi2=5.229780766976106 (change=11.73642435057413 %)
[2025-05-28 03:42:06] 2025-05-28 03:41:45,951 | INFO     | right removable region: 145
[2025-05-28 03:42:06] 2025-05-28 03:41:45,951 | INFO     | sum of square deviations: 964966904.3287656
[2025-05-28 03:42:06] 2025-05-28 03:41:45,952 | INFO     | sum of deviations: 21415570563.643852
[2025-05-28 03:42:06] 2025-05-28 03:41:45,952 | INFO     | mean x: 1748399198.5342467
[2025-05-28 03:42:06] 2025-05-28 03:41:45,952 | INFO     | mean y: 2604823.671232877
[2025-05-28 03:42:06] 2025-05-28 03:41:45,952 | INFO     | -- intersect: -38799727403.12568
[2025-05-28 03:42:06] 2025-05-28 03:41:45,952 | INFO     | intersect: -38799727403.12568
[2025-05-28 03:42:06] 2025-05-28 03:41:45,953 | INFO     | chi2: 1.6444204415729056
[2025-05-28 03:42:06] 2025-05-28 03:41:45,953 | INFO     | current chi2=1.6444204415729056 (change=72.24693834954869 %)
[2025-05-28 03:42:06] 2025-05-28 03:41:45,953 | INFO     | sum of square deviations: 869177536.8226936
[2025-05-28 03:42:06] 2025-05-28 03:41:45,954 | INFO     | sum of deviations: -270738786.6312027
[2025-05-28 03:42:06] 2025-05-28 03:41:45,954 | INFO     | mean x: 1748399351.035461
[2025-05-28 03:42:06] 2025-05-28 03:41:45,954 | INFO     | mean y: 2639118.3262411347
[2025-05-28 03:42:06] 2025-05-28 03:41:45,954 | INFO     | -- intersect: 547245368.2490175
[2025-05-28 03:42:06] 2025-05-28 03:41:45,954 | INFO     | intersect: 547245368.2490175
[2025-05-28 03:42:06] 2025-05-28 03:41:45,954 | INFO     | chi2: 0.8639301568453999
[2025-05-28 03:42:06] 2025-05-28 03:41:45,955 | INFO     | current chi2=0.8639301568453999 (change=47.462939829485364 %)
[2025-05-28 03:42:06] 2025-05-28 03:41:45,955 | INFO     | sum of square deviations: 779946431.8161771
[2025-05-28 03:42:06] 2025-05-28 03:41:45,956 | INFO     | sum of deviations: -7084795209.536765
[2025-05-28 03:42:06] 2025-05-28 03:41:45,956 | INFO     | mean x: 1748399503.5367646
[2025-05-28 03:42:06] 2025-05-28 03:41:45,956 | INFO     | mean y: 2650629.007352941
[2025-05-28 03:42:06] 2025-05-28 03:41:45,956 | INFO     | -- intersect: 15884577799.53025
[2025-05-28 03:42:06] 2025-05-28 03:41:45,956 | INFO     | intersect: 15884577799.53025
[2025-05-28 03:42:06] 2025-05-28 03:41:45,956 | INFO     | chi2: 0.7597746209430714
[2025-05-28 03:42:06] 2025-05-28 03:41:45,957 | INFO     | current chi2=0.7597746209430714 (change=12.056013449356547 %)
[2025-05-28 03:42:06] 2025-05-28 03:41:45,957 | INFO     | left removable region: 30
[2025-05-28 03:42:06] 2025-05-28 03:41:45,957 | INFO     | sum of square deviations: 471554647.8608696
[2025-05-28 03:42:06] 2025-05-28 03:41:45,958 | INFO     | sum of deviations: 665635524.826087
[2025-05-28 03:42:06] 2025-05-28 03:41:45,958 | INFO     | mean x: 1748399778.0347826
[2025-05-28 03:42:06] 2025-05-28 03:41:45,958 | INFO     | mean y: 2670646.0434782607
[2025-05-28 03:42:06] 2025-05-28 03:41:45,958 | INFO     | -- intersect: -2465329635.8694897
[2025-05-28 03:42:06] 2025-05-28 03:41:45,958 | INFO     | intersect: -2465329635.8694897
[2025-05-28 03:42:06] 2025-05-28 03:41:45,958 | INFO     | chi2: 0.00011906356242457079
[2025-05-28 03:42:06] 2025-05-28 03:41:45,958 | INFO     | -- intersect: -2465329635.8694897
[2025-05-28 03:42:06] 2025-05-28 03:41:45,959 | INFO     | current memory leak: 1.41 B/s (using 115 data points, chi2=0.00)
[2025-05-28 03:42:06] 2025-05-28 03:41:45,959 | INFO     | ..............................
[2025-05-28 03:42:06] 2025-05-28 03:41:45,959 | INFO     | . Timing measurements:
[2025-05-28 03:42:06] 2025-05-28 03:41:45,959 | INFO     | . get job = 0 s
[2025-05-28 03:42:06] 2025-05-28 03:41:45,959 | INFO     | . initial setup = 10 s
[2025-05-28 03:42:06] 2025-05-28 03:41:45,959 | INFO     | . payload setup = 105 s
[2025-05-28 03:42:06] 2025-05-28 03:41:45,960 | INFO     | . stage-in = 0 s
[2025-05-28 03:42:06] 2025-05-28 03:41:45,960 | INFO     | . payload execution = 9218 s
[2025-05-28 03:42:06] 2025-05-28 03:41:45,960 | INFO     | . stage-out = 3 s
[2025-05-28 03:42:06] 2025-05-28 03:41:45,960 | INFO     | . log creation = 1 s
[2025-05-28 03:42:06] 2025-05-28 03:41:45,960 | INFO     | ..............................
[2025-05-28 03:42:06] 2025-05-28 03:41:46,543 | INFO     | 
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | job summary report
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | --------------------------------------------------
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | PanDA job id: 6667098652
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | task id: 44871837
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | errors: (none)
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | pilot state: finished 
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | transexitcode: 0
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | exeerrorcode: 0
[2025-05-28 03:42:06] 2025-05-28 03:41:46,544 | INFO     | exeerrordiag: 
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | exitcode: 0
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | exitmsg: OK
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | cpuconsumptiontime: 57541 s
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | nevents: 400
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | neventsw: 0
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | pid: 1028450
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | pgrp: 1028450
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | corecount: 12
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | event service: False
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | sizes: {0: 2404980, 1: 2405064, 2: 2405263, 13: 2405263, 23: 2405319, 34: 2405347, 45: 2405503, 56: 2405531, 67: 2405559, 73: 2405793, 77: 2405821, 9329: 2434421, 
[2025-05-28 03:42:06] 2025-05-28 03:41:46,545 | INFO     | --------------------------------------------------
[2025-05-28 03:42:06] 2025-05-28 03:41:46,546 | INFO     | 
[2025-05-28 03:42:06] 2025-05-28 03:41:46,546 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/13
[2025-05-28 03:42:06] 2025-05-28 03:41:46,665 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,667 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,667 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,667 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,667 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,667 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 03:42:06] 2025-05-28 03:41:46,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,667 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 03:42:06] 2025-05-28 03:41:46,668 | INFO     | job 6667098652 has completed (purged errors)
[2025-05-28 03:42:06] 2025-05-28 03:41:46,668 | INFO     | overall cleanup function is called
[2025-05-28 03:42:06] 2025-05-28 03:41:47,693 | INFO     | --- collectZombieJob: --- 10, [1028450]
[2025-05-28 03:42:06] 2025-05-28 03:41:47,693 | INFO     | zombie collector waiting for pid 1028450
[2025-05-28 03:42:06] 2025-05-28 03:41:47,693 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 03:42:06] 2025-05-28 03:41:47,693 | INFO     | collected zombie processes
[2025-05-28 03:42:06] 2025-05-28 03:41:47,693 | INFO     | will attempt to kill all subprocesses of pid=1028450
[2025-05-28 03:42:06] 2025-05-28 03:41:49,513 | INFO     | PID=1005061 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-28 03:42:06] 2025-05-28 03:41:49,513 | INFO     | .. there are 20 such processes running
[2025-05-28 03:42:06] 2025-05-28 03:41:49,612 | INFO     | process IDs to be killed: [1028450] (in reverse order)
[2025-05-28 03:42:06] 2025-05-28 03:41:51,420 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 03:42:06] 2025-05-28 03:41:51,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 03:42:06] 2025-05-28 03:41:51,454 | INFO     | did not find any defunct processes belonging to 1028450
[2025-05-28 03:42:06] 2025-05-28 03:41:51,492 | INFO     | did not find any defunct processes belonging to 1028450
[2025-05-28 03:42:06] 2025-05-28 03:41:51,492 | INFO     | ready for new job
[2025-05-28 03:42:06] 2025-05-28 03:41:51,492 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 03:42:06] 2025-05-28 03:41:51,494 | INFO     | **************************************
[2025-05-28 03:42:06] 2025-05-28 03:41:51,495 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 03:42:06] 2025-05-28 03:41:51,495 | INFO     | **************************************
[2025-05-28 03:42:06] 2025-05-28 03:41:51,495 | INFO     | 
[2025-05-28 03:42:06] 2025-05-28 03:41:51,531 | INFO     | architecture information:
[2025-05-28 03:42:06] 2025-05-28 03:41:51,537 | INFO     | executing command: cat /etc/os-release
[2025-05-28 03:42:06] 2025-05-28 03:41:51,701 | INFO     | cat /etc/os-release:
[2025-05-28 03:42:06] NAME="CentOS Linux"
[2025-05-28 03:42:06] VERSION="7 (Core)"
[2025-05-28 03:42:06] ID="centos"
[2025-05-28 03:42:06] ID_LIKE="rhel fedora"
[2025-05-28 03:42:06] VERSION_ID="7"
[2025-05-28 03:42:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 03:42:06] ANSI_COLOR="0;31"
[2025-05-28 03:42:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 03:42:06] HOME_URL="https://www.centos.org/"
[2025-05-28 03:42:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 03:42:06] 
[2025-05-28 03:42:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 03:42:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 03:42:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 03:42:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 03:42:06] 
[2025-05-28 03:42:06] 2025-05-28 03:41:51,701 | INFO     | **************************************
[2025-05-28 03:42:06] 2025-05-28 03:41:52,205 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/13
[2025-05-28 03:42:06] 2025-05-28 03:41:52,389 | INFO     | sufficient remaining disk space (329768763392 B)
[2025-05-28 03:42:06] 2025-05-28 03:41:52,390 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 03:42:06] 2025-05-28 03:41:52,390 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 03:42:06] 2025-05-28 03:41:52,390 | INFO     | update_server=False
[2025-05-28 03:42:06] 2025-05-28 03:41:52,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 03:42:06] 2025-05-28 03:41:52,390 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 03:42:06] 2025-05-28 03:41:52,391 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 03:42:06] 2025-05-28 03:41:52,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 03:42:06] 2025-05-28 03:41:52,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 03:42:06] 2025-05-28 03:41:52,393 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 03:42:06] 2025-05-28 03:41:52,393 | INFO     | aborting loop
[2025-05-28 03:42:06] 2025-05-28 03:41:52,403 | INFO     | all data control threads have been joined
[2025-05-28 03:42:06] 2025-05-28 03:41:52,457 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 03:42:06] 2025-05-28 03:41:52,821 | INFO     | all job control threads have been joined
[2025-05-28 03:42:06] 2025-05-28 03:41:52,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 03:42:06] 2025-05-28 03:41:53,017 | INFO     | all payload control threads have been joined
[2025-05-28 03:42:06] 2025-05-28 03:41:53,397 | INFO     | [job] retrieve thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:53,401 | INFO     | [job] job monitor thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:53,409 | INFO     | [data] control thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:53,457 | INFO     | [payload] failed_post thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:53,577 | INFO     | [payload] validate_post thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:53,773 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:53,825 | INFO     | [job] control thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:54,021 | INFO     | [payload] control thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:54,149 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:54,481 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:54,641 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:54,765 | INFO     | [data] copytool_in thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:54,893 | INFO     | [data] copytool_out thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:54,896 | INFO     | [job] validate thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:55,137 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 03:42:06] 2025-05-28 03:41:56,145 | INFO     | [job] queue monitor thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:56,469 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 03:42:06] 2025-05-28 03:41:58,017 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140528587720512)>', '<ExcThread(monitor, started 140528142235392)>']
[2025-05-28 03:42:06] 2025-05-28 03:41:58,433 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 03:42:06] 2025-05-28 03:41:58,433 | INFO     | [monitor] control thread has ended
[2025-05-28 03:42:06] 2025-05-28 03:42:03,041 | INFO     | all workflow threads have been joined
[2025-05-28 03:42:06] 2025-05-28 03:42:03,041 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 03:42:06] 2025-05-28 03:42:03,041 | INFO     | traces error code: 0
[2025-05-28 03:42:06] 2025-05-28 03:42:03,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 03:42:06] 2025-05-28 03:42:03,401 [wrapper] ==== pilot stdout END ====
[2025-05-28 03:42:06] 2025-05-28 03:42:03,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 03:42:06] 2025-05-28 03:42:03,565 [wrapper] pilotpid: 1005061
[2025-05-28 03:42:06] 2025-05-28 03:42:03,661 [wrapper] Pilot exit status: 0
[2025-05-28 03:42:06] 2025-05-28 03:42:03,933 [wrapper] pandaids: 6667098652
[2025-05-28 03:42:06] 2025-05-28 03:42:04,541 [wrapper] cleanup supervisor_pilot 1557165 1005062
[2025-05-28 03:42:06] 2025-05-28 03:42:04,621 [wrapper] Test setup, not cleaning
[2025-05-28 03:42:06] 2025-05-28 03:42:04,693 [wrapper] apfmon messages muted
[2025-05-28 03:42:06] 2025-05-28 03:42:04,769 [wrapper] ==== wrapper stdout END ====
[2025-05-28 03:42:06] 2025-05-28 03:42:04,853 [wrapper] ==== wrapper stderr END ====
[2025-05-28 03:42:06]  *** Error codes and diagnostics ***
[2025-05-28 03:42:06]     "exeErrorCode": 0,
[2025-05-28 03:42:06]     "exeErrorDiag": "",
[2025-05-28 03:42:06]     "pilotErrorCode": 0,
[2025-05-28 03:42:06]     "pilotErrorDiag": "",
[2025-05-28 03:42:06]  *** Listing of results directory ***
[2025-05-28 03:42:06] total 412640
[2025-05-28 03:42:06] -rw-r--r-- 1 boinc boinc    495897 May 27 13:20 pilot3.tar.gz
[2025-05-28 03:42:06] -rwx------ 1 boinc boinc     37140 May 27 13:30 runpilot2-wrapper.sh
[2025-05-28 03:42:06] -rw-r--r-- 1 boinc boinc      5111 May 27 13:30 queuedata.json
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc       100 May 28 01:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 03:42:06] -rwxr-xr-x 1 boinc boinc      7986 May 28 01:00 run_atlas
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc       105 May 28 01:00 job.xml
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc      6949 May 28 01:00 init_data.xml
[2025-05-28 03:42:06] -rw-r--r-- 2 boinc boinc 224377278 May 28 01:00 EVNT.44871834._002679.pool.root.1
[2025-05-28 03:42:06] -rw-r--r-- 2 boinc boinc     15093 May 28 01:00 start_atlas.sh
[2025-05-28 03:42:06] drwxrwx--x 2 boinc boinc      4096 May 28 01:00 shared
[2025-05-28 03:42:06] -rw-r--r-- 2 boinc boinc    508882 May 28 01:00 input.tar.gz
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc         0 May 28 01:00 boinc_lockfile
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc      2558 May 28 01:00 pandaJob.out
[2025-05-28 03:42:06] -rw------- 1 boinc boinc    991169 May 28 01:02 agis_schedconf.cvmfs.json
[2025-05-28 03:42:06] -rw------- 1 boinc boinc   1603667 May 28 01:02 agis_ddmendpoints.agis.ALL.json
[2025-05-28 03:42:06] drwx------ 4 boinc boinc      4096 May 28 01:02 pilot3
[2025-05-28 03:42:06] -rw------- 1 boinc boinc 191760693 May 28 03:39 HITS.44871837._068133.pool.root.1
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc       530 May 28 03:39 boinc_task_state.xml
[2025-05-28 03:42:06] -rw------- 1 boinc boinc      1024 May 28 03:40 memory_monitor_summary.json
[2025-05-28 03:42:06] -rw------- 1 boinc boinc    415910 May 28 03:40 log.44871837._068133.job.log.tgz.1
[2025-05-28 03:42:06] -rw------- 1 boinc boinc        95 May 28 03:41 pilot_heartbeat.json
[2025-05-28 03:42:06] -rw------- 1 boinc boinc      7651 May 28 03:41 heartbeat.json
[2025-05-28 03:42:06] -rw------- 1 boinc boinc      4501 May 28 03:42 pilotlog.txt
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc      8192 May 28 03:42 boinc_mmap_file
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc        27 May 28 03:42 wrapper_checkpoint.txt
[2025-05-28 03:42:06] -rw------- 1 boinc boinc    867159 May 28 03:42 log.44871837._068133.job.log.1
[2025-05-28 03:42:06] -rw------- 1 boinc boinc       357 May 28 03:42 output.list
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc       620 May 28 03:42 runtime_log
[2025-05-28 03:42:06] -rw------- 1 boinc boinc   1300480 May 28 03:42 result.tar.gz
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc      8977 May 28 03:42 runtime_log.err
[2025-05-28 03:42:06] -rw------- 1 boinc boinc       653 May 28 03:42 YpINDm8Y9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGYZKDmN7pfJn.diag
[2025-05-28 03:42:06] -rw-rw-r-- 1 boinc boinc     20763 May 28 03:42 stderr.txt
[2025-05-28 03:42:06] HITS file was successfully produced:
[2025-05-28 03:42:06] -rw------- 1 boinc boinc 191760693 May 28 03:39 shared/HITS.pool.root.1
[2025-05-28 03:42:06]  *** Contents of shared directory: ***
[2025-05-28 03:42:06] total 408184
[2025-05-28 03:42:06] -rw-r--r-- 2 boinc boinc 224377278 May 28 01:00 ATLAS.root_0
[2025-05-28 03:42:06] -rw-r--r-- 2 boinc boinc     15093 May 28 01:00 start_atlas.sh
[2025-05-28 03:42:06] -rw-r--r-- 2 boinc boinc    508882 May 28 01:00 input.tar.gz
[2025-05-28 03:42:06] -rw------- 1 boinc boinc 191760693 May 28 03:39 HITS.pool.root.1
[2025-05-28 03:42:06] -rw------- 1 boinc boinc   1300480 May 28 03:42 result.tar.gz
03:42:07 (980129): run_atlas exited; CPU time 58040.910340
03:42:07 (980129): called boinc_finish(0)

</stderr_txt>
]]>

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