Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:33:37 (9006): wrapper (7.7.26015): starting
09:33:37 (9006): wrapper: running run_atlas (--nthreads 8)
[2025-05-28 09:33:37] Arguments: --nthreads 8
[2025-05-28 09:33:37] Threads: 8
[2025-05-28 09:33:37] Checking for CVMFS
[2025-05-28 09:33:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 09:33:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 09:33:38] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 09:33:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 09:33:39] 2.11.2.0 18345 22929 96176 146510 0 100 17514741 25165825 4632 130560 0 12591213 99.827 14173094 1676 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-28 09:33:39] CVMFS is ok
[2025-05-28 09:33:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 09:33:39] Checking for apptainer binary...
[2025-05-28 09:33:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 09:33:39] Running /usr/bin/apptainer --version
[2025-05-28 09:33:39] apptainer version 1.3.2-1.el7
[2025-05-28 09:33:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 09:33:52] cg-vwn239.simple-grid.lan
[2025-05-28 09:33:52] apptainer works
[2025-05-28 09:33:52] Set ATHENA_PROC_NUMBER=8
[2025-05-28 09:33:52] Set ATHENA_CORE_NUMBER=8
[2025-05-28 09:33:53] Starting ATLAS job with PandaID=6667279908
[2025-05-28 09:33:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 15:01:07]  *** The last 200 lines of the pilot log: ***
[2025-05-28 15:01:07] 2025-05-28 13:00:53,434 | INFO     | extracted standard info from prmon json
[2025-05-28 15:01:07] 2025-05-28 13:00:53,434 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 15:01:07] 2025-05-28 13:00:53,434 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 15:01:07] 2025-05-28 13:00:53,434 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 15:01:07] 2025-05-28 13:00:53,434 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 15:01:07] 2025-05-28 13:00:53,441 | INFO     | fitting pss+swap vs Time
[2025-05-28 15:01:07] 2025-05-28 13:00:53,442 | INFO     | sum of square deviations: 9237596457.5
[2025-05-28 15:01:07] 2025-05-28 13:00:53,445 | INFO     | sum of deviations: 121491777981.49998
[2025-05-28 15:01:07] 2025-05-28 13:00:53,446 | INFO     | mean x: 1748427755.5
[2025-05-28 15:01:07] 2025-05-28 13:00:53,446 | INFO     | mean y: 2466820.45483871
[2025-05-28 15:01:07] 2025-05-28 13:00:53,446 | INFO     | -- intersect: -22992648593.51575
[2025-05-28 15:01:07] 2025-05-28 13:00:53,446 | INFO     | intersect: -22992648593.51575
[2025-05-28 15:01:07] 2025-05-28 13:00:53,447 | INFO     | chi2: 5.51630504726124
[2025-05-28 15:01:07] 2025-05-28 13:00:53,447 | INFO     | sum of square deviations: 8797783560.0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,450 | INFO     | sum of deviations: 119381697305.00002
[2025-05-28 15:01:07] 2025-05-28 13:00:53,451 | INFO     | mean x: 1748427603.0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,451 | INFO     | mean y: 2466088.747540984
[2025-05-28 15:01:07] 2025-05-28 13:00:53,451 | INFO     | -- intersect: -23722856708.469894
[2025-05-28 15:01:07] 2025-05-28 13:00:53,451 | INFO     | intersect: -23722856708.469894
[2025-05-28 15:01:07] 2025-05-28 13:00:53,451 | INFO     | chi2: 5.521743314227434
[2025-05-28 15:01:07] 2025-05-28 13:00:53,451 | INFO     | current chi2=5.521743314227434 (change=-0.09858531969499922 %)
[2025-05-28 15:01:07] 2025-05-28 13:00:53,452 | INFO     | right removable region: 304
[2025-05-28 15:01:07] 2025-05-28 13:00:53,452 | INFO     | sum of square deviations: 8797783560.0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,455 | INFO     | sum of deviations: 13802238382.999992
[2025-05-28 15:01:07] 2025-05-28 13:00:53,456 | INFO     | mean x: 1748427908.0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,456 | INFO     | mean y: 2504133.544262295
[2025-05-28 15:01:07] 2025-05-28 13:00:53,456 | INFO     | -- intersect: -2740484326.802218
[2025-05-28 15:01:07] 2025-05-28 13:00:53,456 | INFO     | intersect: -2740484326.802218
[2025-05-28 15:01:07] 2025-05-28 13:00:53,456 | INFO     | chi2: 0.8777769934268497
[2025-05-28 15:01:07] 2025-05-28 13:00:53,457 | INFO     | current chi2=0.8777769934268497 (change=84.0875914963649 %)
[2025-05-28 15:01:07] 2025-05-28 13:00:53,457 | INFO     | sum of square deviations: 8372156975.0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,460 | INFO     | sum of deviations: -21886220378.0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,460 | INFO     | mean x: 1748428060.5
[2025-05-28 15:01:07] 2025-05-28 13:00:53,461 | INFO     | mean y: 2516837.86
[2025-05-28 15:01:07] 2025-05-28 13:00:53,461 | INFO     | -- intersect: 4573200588.946991
[2025-05-28 15:01:07] 2025-05-28 13:00:53,461 | INFO     | intersect: 4573200588.946991
[2025-05-28 15:01:07] 2025-05-28 13:00:53,461 | INFO     | chi2: 0.13923724113575234
[2025-05-28 15:01:07] 2025-05-28 13:00:53,461 | INFO     | current chi2=0.13923724113575234 (change=84.13751531671288 %)
[2025-05-28 15:01:07] 2025-05-28 13:00:53,462 | INFO     | sum of square deviations: 7960484140.0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,465 | INFO     | sum of deviations: -21310506282.000004
[2025-05-28 15:01:07] 2025-05-28 13:00:53,465 | INFO     | mean x: 1748428213.0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,465 | INFO     | mean y: 2516605.650847458
[2025-05-28 15:01:07] 2025-05-28 13:00:53,465 | INFO     | -- intersect: 4683122679.537521
[2025-05-28 15:01:07] 2025-05-28 13:00:53,465 | INFO     | intersect: 4683122679.537521
[2025-05-28 15:01:07] 2025-05-28 13:00:53,466 | INFO     | chi2: 0.12496596182079321
[2025-05-28 15:01:07] 2025-05-28 13:00:53,466 | INFO     | current chi2=0.12496596182079321 (change=10.249613679895479 %)
[2025-05-28 15:01:07] 2025-05-28 13:00:53,466 | INFO     | left removable region: 30
[2025-05-28 15:01:07] 2025-05-28 13:00:53,467 | INFO     | sum of square deviations: 6378584712.5
[2025-05-28 15:01:07] 2025-05-28 13:00:53,469 | INFO     | sum of deviations: 8165941137.500001
[2025-05-28 15:01:07] 2025-05-28 13:00:53,469 | INFO     | mean x: 1748428487.5
[2025-05-28 15:01:07] 2025-05-28 13:00:53,469 | INFO     | mean y: 2504644.602189781
[2025-05-28 15:01:07] 2025-05-28 13:00:53,470 | INFO     | -- intersect: -2235854608.364015
[2025-05-28 15:01:07] 2025-05-28 13:00:53,470 | INFO     | intersect: -2235854608.364015
[2025-05-28 15:01:07] 2025-05-28 13:00:53,470 | INFO     | chi2: 0.0009639882747949866
[2025-05-28 15:01:07] 2025-05-28 13:00:53,470 | INFO     | -- intersect: -2235854608.364015
[2025-05-28 15:01:07] 2025-05-28 13:00:53,470 | INFO     | current memory leak: 1.28 B/s (using 274 data points, chi2=0.00)
[2025-05-28 15:01:07] 2025-05-28 13:00:53,471 | INFO     | ..............................
[2025-05-28 15:01:07] 2025-05-28 13:00:53,472 | INFO     | . Timing measurements:
[2025-05-28 15:01:07] 2025-05-28 13:00:53,472 | INFO     | . get job = 0 s
[2025-05-28 15:01:07] 2025-05-28 13:00:53,472 | INFO     | . initial setup = 5 s
[2025-05-28 15:01:07] 2025-05-28 13:00:53,472 | INFO     | . payload setup = 150 s
[2025-05-28 15:01:07] 2025-05-28 13:00:53,472 | INFO     | . stage-in = 0 s
[2025-05-28 15:01:07] 2025-05-28 13:00:53,472 | INFO     | . payload execution = 19055 s
[2025-05-28 15:01:07] 2025-05-28 13:00:53,472 | INFO     | . stage-out = 11 s
[2025-05-28 15:01:07] 2025-05-28 13:00:53,472 | INFO     | . log creation = 9 s
[2025-05-28 15:01:07] 2025-05-28 13:00:53,472 | INFO     | ..............................
[2025-05-28 15:01:07] 2025-05-28 13:00:53,864 | INFO     | 
[2025-05-28 15:01:07] 2025-05-28 13:00:53,864 | INFO     | job summary report
[2025-05-28 15:01:07] 2025-05-28 13:00:53,864 | INFO     | --------------------------------------------------
[2025-05-28 15:01:07] 2025-05-28 13:00:53,864 | INFO     | PanDA job id: 6667279908
[2025-05-28 15:01:07] 2025-05-28 13:00:53,864 | INFO     | task id: 44871837
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | errors: (none)
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | pilot state: finished 
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | transexitcode: 0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | exeerrorcode: 0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | exeerrordiag: 
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | exitcode: 0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | exitmsg: OK
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | cpuconsumptiontime: 71679 s
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | nevents: 400
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | neventsw: 0
[2025-05-28 15:01:07] 2025-05-28 13:00:53,865 | INFO     | pid: 25037
[2025-05-28 15:01:07] 2025-05-28 13:00:53,866 | INFO     | pgrp: 25037
[2025-05-28 15:01:07] 2025-05-28 13:00:53,866 | INFO     | corecount: 8
[2025-05-28 15:01:07] 2025-05-28 13:00:53,866 | INFO     | event service: False
[2025-05-28 15:01:07] 2025-05-28 13:00:53,866 | INFO     | sizes: {0: 2405063, 1: 2405262, 12: 2405262, 22: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 65: 2405558, 76: 2405586, 87: 2405642, 88: 2405876, 97: 2406184, 1
[2025-05-28 15:01:07] 2025-05-28 13:00:53,866 | INFO     | --------------------------------------------------
[2025-05-28 15:01:07] 2025-05-28 13:00:53,866 | INFO     | 
[2025-05-28 15:01:07] 2025-05-28 13:00:53,866 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-05-28 15:01:07] 2025-05-28 13:00:53,889 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,890 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,890 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,890 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,890 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,890 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,890 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,890 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 15:01:07] 2025-05-28 13:00:53,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,892 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 15:01:07] 2025-05-28 13:00:53,892 | INFO     | job 6667279908 has completed (purged errors)
[2025-05-28 15:01:07] 2025-05-28 13:00:53,892 | INFO     | overall cleanup function is called
[2025-05-28 15:01:07] 2025-05-28 13:00:54,900 | INFO     | --- collectZombieJob: --- 10, [25037]
[2025-05-28 15:01:07] 2025-05-28 13:00:54,900 | INFO     | zombie collector waiting for pid 25037
[2025-05-28 15:01:07] 2025-05-28 13:00:54,900 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 15:01:07] 2025-05-28 13:00:54,900 | INFO     | collected zombie processes
[2025-05-28 15:01:07] 2025-05-28 13:00:54,900 | INFO     | will attempt to kill all subprocesses of pid=25037
[2025-05-28 15:01:07] 2025-05-28 13:00:55,003 | INFO     | process IDs to be killed: [25037] (in reverse order)
[2025-05-28 15:01:07] 2025-05-28 13:00:55,058 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 15:01:07] 2025-05-28 13:00:55,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 15:01:07] 2025-05-28 13:00:55,062 | INFO     | did not find any defunct processes belonging to 25037
[2025-05-28 15:01:07] 2025-05-28 13:00:55,065 | INFO     | did not find any defunct processes belonging to 25037
[2025-05-28 15:01:07] 2025-05-28 13:00:55,065 | INFO     | ready for new job
[2025-05-28 15:01:07] 2025-05-28 13:00:55,065 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 15:01:07] 2025-05-28 13:00:55,068 | INFO     | **************************************
[2025-05-28 15:01:07] 2025-05-28 13:00:55,068 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 15:01:07] 2025-05-28 13:00:55,068 | INFO     | **************************************
[2025-05-28 15:01:07] 2025-05-28 13:00:55,068 | INFO     | 
[2025-05-28 15:01:07] 2025-05-28 13:00:55,069 | INFO     | pilot is running in a VM
[2025-05-28 15:01:07] 2025-05-28 13:00:55,069 | INFO     | architecture information:
[2025-05-28 15:01:07] 2025-05-28 13:00:55,069 | INFO     | executing command: cat /etc/os-release
[2025-05-28 15:01:07] 2025-05-28 13:00:55,088 | INFO     | cat /etc/os-release:
[2025-05-28 15:01:07] NAME="CentOS Linux"
[2025-05-28 15:01:07] VERSION="7 (Core)"
[2025-05-28 15:01:07] ID="centos"
[2025-05-28 15:01:07] ID_LIKE="rhel fedora"
[2025-05-28 15:01:07] VERSION_ID="7"
[2025-05-28 15:01:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 15:01:07] ANSI_COLOR="0;31"
[2025-05-28 15:01:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 15:01:07] HOME_URL="https://www.centos.org/"
[2025-05-28 15:01:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 15:01:07] 
[2025-05-28 15:01:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 15:01:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 15:01:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 15:01:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 15:01:07] 
[2025-05-28 15:01:07] 2025-05-28 13:00:55,089 | INFO     | **************************************
[2025-05-28 15:01:07] 2025-05-28 13:00:55,590 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-05-28 15:01:07] 2025-05-28 13:00:55,608 | INFO     | sufficient remaining disk space (495163801600 B)
[2025-05-28 15:01:07] 2025-05-28 13:00:55,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 15:01:07] 2025-05-28 13:00:55,608 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 15:01:07] 2025-05-28 13:00:55,608 | INFO     | update_server=False
[2025-05-28 15:01:07] 2025-05-28 13:00:55,608 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 15:01:07] 2025-05-28 13:00:55,609 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 15:01:07] 2025-05-28 13:00:55,609 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 15:01:07] 2025-05-28 13:00:55,609 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 15:01:07] 2025-05-28 13:00:55,609 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 15:01:07] 2025-05-28 13:00:55,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 15:01:07] 2025-05-28 13:00:55,610 | INFO     | aborting loop
[2025-05-28 15:01:07] 2025-05-28 13:00:55,610 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 15:01:07] 2025-05-28 13:00:56,568 | INFO     | all data control threads have been joined
[2025-05-28 15:01:07] 2025-05-28 13:00:56,614 | INFO     | [job] retrieve thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:56,615 | INFO     | [job] job monitor thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:56,652 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:56,674 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:56,705 | INFO     | all payload control threads have been joined
[2025-05-28 15:01:07] 2025-05-28 13:00:56,745 | INFO     | [payload] validate_post thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:56,866 | INFO     | all job control threads have been joined
[2025-05-28 15:01:07] 2025-05-28 13:00:57,080 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 15:01:07] 2025-05-28 13:00:57,367 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:57,570 | INFO     | [data] control thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:57,612 | INFO     | [data] copytool_out thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:57,623 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:57,623 | INFO     | [job] validate thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:57,710 | INFO     | [payload] control thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:57,869 | INFO     | [job] control thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:57,927 | INFO     | [payload] failed_post thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:58,027 | INFO     | [data] copytool_in thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:00:58,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 15:01:07] 2025-05-28 13:00:59,610 | INFO     | [job] queue monitor thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:01:01,086 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 15:01:07] 2025-05-28 13:01:01,644 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965582796608)>', '<ExcThread(monitor, started 139964897539840)>']
[2025-05-28 15:01:07] 2025-05-28 13:01:02,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 15:01:07] 2025-05-28 13:01:02,641 | INFO     | [monitor] control thread has ended
[2025-05-28 15:01:07] 2025-05-28 13:01:06,669 | INFO     | all workflow threads have been joined
[2025-05-28 15:01:07] 2025-05-28 13:01:06,669 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 15:01:07] 2025-05-28 13:01:06,669 | INFO     | traces error code: 0
[2025-05-28 15:01:07] 2025-05-28 13:01:06,670 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 15:01:07] 2025-05-28 13:01:06,845 [wrapper] ==== pilot stdout END ====
[2025-05-28 15:01:07] 2025-05-28 13:01:06,848 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 15:01:07] 2025-05-28 13:01:06,852 [wrapper] pilotpid: 14443
[2025-05-28 15:01:07] 2025-05-28 13:01:06,857 [wrapper] Pilot exit status: 0
[2025-05-28 15:01:07] 2025-05-28 13:01:06,874 [wrapper] pandaids: 6667279908
[2025-05-28 15:01:07] 2025-05-28 13:01:06,915 [wrapper] cleanup supervisor_pilot 10297 14444
[2025-05-28 15:01:07] 2025-05-28 13:01:06,925 [wrapper] Test setup, not cleaning
[2025-05-28 15:01:07] 2025-05-28 13:01:06,928 [wrapper] apfmon messages muted
[2025-05-28 15:01:07] 2025-05-28 13:01:06,931 [wrapper] ==== wrapper stdout END ====
[2025-05-28 15:01:07] 2025-05-28 13:01:06,934 [wrapper] ==== wrapper stderr END ====
[2025-05-28 15:01:07]  *** Error codes and diagnostics ***
[2025-05-28 15:01:07]     "exeErrorCode": 0,
[2025-05-28 15:01:07]     "exeErrorDiag": "",
[2025-05-28 15:01:07]     "pilotErrorCode": 0,
[2025-05-28 15:01:07]     "pilotErrorDiag": "",
[2025-05-28 15:01:07]  *** Listing of results directory ***
[2025-05-28 15:01:07] total 418848
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc    495897 May 27 17:39 pilot3.tar.gz
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc      5111 May 27 18:05 queuedata.json
[2025-05-28 15:01:07] -rwx------. 1 boinc boinc     37140 May 27 18:06 runpilot2-wrapper.sh
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc       100 May 28 09:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 15:01:07] -rwxr-xr-x. 1 boinc boinc      7986 May 28 09:33 run_atlas
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc       105 May 28 09:33 job.xml
[2025-05-28 15:01:07] -rw-r--r--. 2 boinc boinc 223437770 May 28 09:33 EVNT.44871834._002750.pool.root.1
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc      6372 May 28 09:33 init_data.xml
[2025-05-28 15:01:07] -rw-r--r--. 2 boinc boinc     15093 May 28 09:33 start_atlas.sh
[2025-05-28 15:01:07] drwxrwx--x. 2 boinc boinc        68 May 28 09:33 shared
[2025-05-28 15:01:07] -rw-r--r--. 2 boinc boinc    508887 May 28 09:33 input.tar.gz
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc         0 May 28 09:33 boinc_lockfile
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc      2559 May 28 09:33 pandaJob.out
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc    991169 May 28 09:37 agis_schedconf.cvmfs.json
[2025-05-28 15:01:07] drwx------. 4 boinc boinc      4096 May 28 09:37 pilot3
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc 197456971 May 28 14:59 HITS.44871837._069978.pool.root.1
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc        95 May 28 14:59 pilot_heartbeat.json
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc       531 May 28 15:00 boinc_task_state.xml
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc      1018 May 28 15:00 memory_monitor_summary.json
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc   1603667 May 28 15:00 agis_ddmendpoints.agis.ALL.json
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc    440274 May 28 15:00 log.44871837._069978.job.log.tgz.1
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc      8192 May 28 15:00 boinc_mmap_file
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc        28 May 28 15:00 wrapper_checkpoint.txt
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc      7690 May 28 15:00 heartbeat.json
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc      4539 May 28 15:01 pilotlog.txt
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc   1645649 May 28 15:01 log.44871837._069978.job.log.1
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc       357 May 28 15:01 output.list
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc       620 May 28 15:01 runtime_log
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc   2109440 May 28 15:01 result.tar.gz
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc       656 May 28 15:01 uJ2NDmK0Be7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmspZKDmVXKGvn.diag
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc      8659 May 28 15:01 runtime_log.err
[2025-05-28 15:01:07] -rw-r--r--. 1 boinc boinc     20513 May 28 15:01 stderr.txt
[2025-05-28 15:01:07] HITS file was successfully produced:
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc 197456971 May 28 14:59 shared/HITS.pool.root.1
[2025-05-28 15:01:07]  *** Contents of shared directory: ***
[2025-05-28 15:01:07] total 413612
[2025-05-28 15:01:07] -rw-r--r--. 2 boinc boinc 223437770 May 28 09:33 ATLAS.root_0
[2025-05-28 15:01:07] -rw-r--r--. 2 boinc boinc     15093 May 28 09:33 start_atlas.sh
[2025-05-28 15:01:07] -rw-r--r--. 2 boinc boinc    508887 May 28 09:33 input.tar.gz
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc 197456971 May 28 14:59 HITS.pool.root.1
[2025-05-28 15:01:07] -rw-------. 1 boinc boinc   2109440 May 28 15:01 result.tar.gz
15:01:08 (9006): run_atlas exited; CPU time 71947.381014
15:01:08 (9006): called boinc_finish(0)

</stderr_txt>
]]>

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