Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:48:27 (30732): wrapper (7.7.26015): starting
10:48:27 (30732): wrapper: running run_atlas (--nthreads 8)
[2025-05-28 10:48:27] Arguments: --nthreads 8
[2025-05-28 10:48:27] Threads: 8
[2025-05-28 10:48:27] Checking for CVMFS
[2025-05-28 10:48:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 10:48:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 10:48:28] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 10:48:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 10:48:29] 2.11.2.0 32329 23020 89612 146511 2 59 12917395 25165824 4240 130560 0 12963276 99.797 15032966 1991 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-28 10:48:29] CVMFS is ok
[2025-05-28 10:48:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 10:48:29] Checking for apptainer binary...
[2025-05-28 10:48:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 10:48:29] Running /usr/bin/apptainer --version
[2025-05-28 10:48:29] apptainer version 1.3.2-1.el7
[2025-05-28 10:48:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 10:48:41] cg-vwn362.simple-grid.lan
[2025-05-28 10:48:41] apptainer works
[2025-05-28 10:48:41] Set ATHENA_PROC_NUMBER=8
[2025-05-28 10:48:41] Set ATHENA_CORE_NUMBER=8
[2025-05-28 10:48:41] Starting ATLAS job with PandaID=6666948520
[2025-05-28 10:48:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 16:27:33]  *** The last 200 lines of the pilot log: ***
[2025-05-28 16:27:33] 2025-05-28 14:03:20,803 | INFO     | extracted standard info from prmon json
[2025-05-28 16:27:33] 2025-05-28 14:03:20,803 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 16:27:33] 2025-05-28 14:03:20,803 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 16:27:33] 2025-05-28 14:03:20,804 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 16:27:33] 2025-05-28 14:03:20,804 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 16:27:33] 2025-05-28 14:03:20,810 | INFO     | fitting pss+swap vs Time
[2025-05-28 16:27:33] 2025-05-28 14:03:20,810 | INFO     | sum of square deviations: 8123493708.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,820 | INFO     | sum of deviations: 144004140332.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,821 | INFO     | mean x: 1748431866.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,821 | INFO     | mean y: 2418235.888888889
[2025-05-28 16:27:33] 2025-05-28 14:03:20,821 | INFO     | -- intersect: -30991811198.233868
[2025-05-28 16:27:33] 2025-05-28 14:03:20,821 | INFO     | intersect: -30991811198.233868
[2025-05-28 16:27:33] 2025-05-28 14:03:20,822 | INFO     | chi2: 8.801193633606758
[2025-05-28 16:27:33] 2025-05-28 14:03:20,822 | INFO     | sum of square deviations: 7720081493.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,825 | INFO     | sum of deviations: 184113221726.5
[2025-05-28 16:27:33] 2025-05-28 14:03:20,825 | INFO     | mean x: 1748431713.5
[2025-05-28 16:27:33] 2025-05-28 14:03:20,825 | INFO     | mean y: 2433230.085616438
[2025-05-28 16:27:33] 2025-05-28 14:03:20,825 | INFO     | -- intersect: -41695234862.29832
[2025-05-28 16:27:33] 2025-05-28 14:03:20,825 | INFO     | intersect: -41695234862.29832
[2025-05-28 16:27:33] 2025-05-28 14:03:20,826 | INFO     | chi2: 7.043314673583841
[2025-05-28 16:27:33] 2025-05-28 14:03:20,826 | INFO     | current chi2=7.043314673583841 (change=19.973188106106154 %)
[2025-05-28 16:27:33] 2025-05-28 14:03:20,826 | INFO     | right removable region: 291
[2025-05-28 16:27:33] 2025-05-28 14:03:20,826 | INFO     | sum of square deviations: 7720081493.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,829 | INFO     | sum of deviations: 39202492684.50002
[2025-05-28 16:27:33] 2025-05-28 14:03:20,830 | INFO     | mean x: 1748432018.5
[2025-05-28 16:27:33] 2025-05-28 14:03:20,830 | INFO     | mean y: 2457837.6815068494
[2025-05-28 16:27:33] 2025-05-28 14:03:20,830 | INFO     | -- intersect: -8876061576.490675
[2025-05-28 16:27:33] 2025-05-28 14:03:20,830 | INFO     | intersect: -8876061576.490675
[2025-05-28 16:27:33] 2025-05-28 14:03:20,830 | INFO     | chi2: 3.831513252524762
[2025-05-28 16:27:33] 2025-05-28 14:03:20,831 | INFO     | current chi2=3.831513252524762 (change=56.465981638054295 %)
[2025-05-28 16:27:33] 2025-05-28 14:03:20,831 | INFO     | sum of square deviations: 7330250928.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,834 | INFO     | sum of deviations: -23789317349.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,834 | INFO     | mean x: 1748432171.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,834 | INFO     | mean y: 2482393.9407665506
[2025-05-28 16:27:33] 2025-05-28 14:03:20,834 | INFO     | -- intersect: 5676777610.798864
[2025-05-28 16:27:33] 2025-05-28 14:03:20,834 | INFO     | intersect: 5676777610.798864
[2025-05-28 16:27:33] 2025-05-28 14:03:20,842 | INFO     | chi2: 1.9381854849040583
[2025-05-28 16:27:33] 2025-05-28 14:03:20,842 | INFO     | current chi2=1.9381854849040583 (change=49.414621399863414 %)
[2025-05-28 16:27:33] 2025-05-28 14:03:20,843 | INFO     | sum of square deviations: 6953769450.5
[2025-05-28 16:27:33] 2025-05-28 14:03:20,845 | INFO     | sum of deviations: -26357484327.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,846 | INFO     | mean x: 1748432323.5
[2025-05-28 16:27:33] 2025-05-28 14:03:20,846 | INFO     | mean y: 2483408.8865248226
[2025-05-28 16:27:33] 2025-05-28 14:03:20,846 | INFO     | -- intersect: 6629720318.525199
[2025-05-28 16:27:33] 2025-05-28 14:03:20,846 | INFO     | intersect: 6629720318.525199
[2025-05-28 16:27:33] 2025-05-28 14:03:20,846 | INFO     | chi2: 1.9157510544909666
[2025-05-28 16:27:33] 2025-05-28 14:03:20,846 | INFO     | current chi2=1.9157510544909666 (change=1.1574965651031175 %)
[2025-05-28 16:27:33] 2025-05-28 14:03:20,846 | INFO     | left removable region: 30
[2025-05-28 16:27:33] 2025-05-28 14:03:20,847 | INFO     | sum of square deviations: 5513070810.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,849 | INFO     | sum of deviations: 6960947534.000001
[2025-05-28 16:27:33] 2025-05-28 14:03:20,849 | INFO     | mean x: 1748432598.0
[2025-05-28 16:27:33] 2025-05-28 14:03:20,850 | INFO     | mean y: 2503742.436781609
[2025-05-28 16:27:33] 2025-05-28 14:03:20,850 | INFO     | -- intersect: -2205113028.843781
[2025-05-28 16:27:33] 2025-05-28 14:03:20,850 | INFO     | intersect: -2205113028.843781
[2025-05-28 16:27:33] 2025-05-28 14:03:20,850 | INFO     | chi2: 0.0007495329742659057
[2025-05-28 16:27:33] 2025-05-28 14:03:20,850 | INFO     | -- intersect: -2205113028.843781
[2025-05-28 16:27:33] 2025-05-28 14:03:20,859 | INFO     | current memory leak: 1.26 B/s (using 261 data points, chi2=0.00)
[2025-05-28 16:27:33] 2025-05-28 14:03:20,860 | INFO     | ..............................
[2025-05-28 16:27:33] 2025-05-28 14:03:20,860 | INFO     | . Timing measurements:
[2025-05-28 16:27:33] 2025-05-28 14:03:20,860 | INFO     | . get job = 0 s
[2025-05-28 16:27:33] 2025-05-28 14:03:20,860 | INFO     | . initial setup = 10 s
[2025-05-28 16:27:33] 2025-05-28 14:03:20,860 | INFO     | . payload setup = 180 s
[2025-05-28 16:27:33] 2025-05-28 14:03:20,860 | INFO     | . stage-in = 0 s
[2025-05-28 16:27:33] 2025-05-28 14:03:20,860 | INFO     | . payload execution = 18214 s
[2025-05-28 16:27:33] 2025-05-28 14:03:20,860 | INFO     | . stage-out = 3 s
[2025-05-28 16:27:33] 2025-05-28 14:03:20,860 | INFO     | . log creation = 1 s
[2025-05-28 16:27:33] 2025-05-28 14:03:20,861 | INFO     | ..............................
[2025-05-28 16:27:33] 2025-05-28 14:03:21,478 | INFO     | 
[2025-05-28 16:27:33] 2025-05-28 14:03:21,478 | INFO     | job summary report
[2025-05-28 16:27:33] 2025-05-28 14:03:21,478 | INFO     | --------------------------------------------------
[2025-05-28 16:27:33] 2025-05-28 14:03:21,478 | INFO     | PanDA job id: 6666948520
[2025-05-28 16:27:33] 2025-05-28 14:03:21,478 | INFO     | task id: 44871837
[2025-05-28 16:27:33] 2025-05-28 14:03:21,478 | INFO     | errors: (none)
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | pilot state: finished 
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | transexitcode: 0
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | exeerrorcode: 0
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | exeerrordiag: 
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | exitcode: 0
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | exitmsg: OK
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | cpuconsumptiontime: 68908 s
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | nevents: 400
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | neventsw: 0
[2025-05-28 16:27:33] 2025-05-28 14:03:21,479 | INFO     | pid: 13249
[2025-05-28 16:27:33] 2025-05-28 14:03:21,480 | INFO     | pgrp: 13249
[2025-05-28 16:27:33] 2025-05-28 14:03:21,480 | INFO     | corecount: 8
[2025-05-28 16:27:33] 2025-05-28 14:03:21,480 | INFO     | event service: False
[2025-05-28 16:27:33] 2025-05-28 14:03:21,480 | INFO     | sizes: {0: 2405013, 1: 2405212, 12: 2405212, 23: 2405240, 33: 2405268, 44: 2405324, 55: 2405480, 66: 2405508, 76: 2405536, 87: 2405592, 89: 2405826, 98: 2406134, 1
[2025-05-28 16:27:33] 2025-05-28 14:03:21,480 | INFO     | --------------------------------------------------
[2025-05-28 16:27:33] 2025-05-28 14:03:21,480 | INFO     | 
[2025-05-28 16:27:33] 2025-05-28 14:03:21,480 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-05-28 16:27:33] 2025-05-28 14:03:22,091 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,092 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,092 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,092 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,092 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,092 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,092 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,092 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,092 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,092 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,093 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,093 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,093 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,093 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,093 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,093 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,093 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,093 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 16:27:33] 2025-05-28 14:03:22,093 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,094 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 16:27:33] 2025-05-28 14:03:22,094 | INFO     | job 6666948520 has completed (purged errors)
[2025-05-28 16:27:33] 2025-05-28 14:03:22,094 | INFO     | overall cleanup function is called
[2025-05-28 16:27:33] 2025-05-28 14:03:23,103 | INFO     | --- collectZombieJob: --- 10, [13249]
[2025-05-28 16:27:33] 2025-05-28 14:03:23,103 | INFO     | zombie collector waiting for pid 13249
[2025-05-28 16:27:33] 2025-05-28 14:03:23,103 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 16:27:33] 2025-05-28 14:03:23,103 | INFO     | collected zombie processes
[2025-05-28 16:27:33] 2025-05-28 14:03:23,103 | INFO     | will attempt to kill all subprocesses of pid=13249
[2025-05-28 16:27:33] 2025-05-28 14:03:23,225 | INFO     | process IDs to be killed: [13249] (in reverse order)
[2025-05-28 16:27:33] 2025-05-28 14:03:23,657 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 16:27:33] 2025-05-28 14:03:23,658 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 16:27:33] 2025-05-28 14:03:23,661 | INFO     | did not find any defunct processes belonging to 13249
[2025-05-28 16:27:33] 2025-05-28 14:03:23,664 | INFO     | did not find any defunct processes belonging to 13249
[2025-05-28 16:27:33] 2025-05-28 14:03:23,664 | INFO     | ready for new job
[2025-05-28 16:27:33] 2025-05-28 14:03:23,665 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 16:27:33] 2025-05-28 14:03:23,667 | INFO     | **************************************
[2025-05-28 16:27:33] 2025-05-28 14:03:23,667 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 16:27:33] 2025-05-28 14:03:23,667 | INFO     | **************************************
[2025-05-28 16:27:33] 2025-05-28 14:03:23,667 | INFO     | 
[2025-05-28 16:27:33] 2025-05-28 14:03:23,668 | INFO     | pilot is running in a VM
[2025-05-28 16:27:33] 2025-05-28 14:03:23,668 | INFO     | architecture information:
[2025-05-28 16:27:33] 2025-05-28 14:03:23,673 | INFO     | executing command: cat /etc/os-release
[2025-05-28 16:27:33] 2025-05-28 14:03:23,779 | INFO     | cat /etc/os-release:
[2025-05-28 16:27:33] NAME="CentOS Linux"
[2025-05-28 16:27:33] VERSION="7 (Core)"
[2025-05-28 16:27:33] ID="centos"
[2025-05-28 16:27:33] ID_LIKE="rhel fedora"
[2025-05-28 16:27:33] VERSION_ID="7"
[2025-05-28 16:27:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 16:27:33] ANSI_COLOR="0;31"
[2025-05-28 16:27:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 16:27:33] HOME_URL="https://www.centos.org/"
[2025-05-28 16:27:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 16:27:33] 
[2025-05-28 16:27:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 16:27:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 16:27:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 16:27:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 16:27:33] 
[2025-05-28 16:27:33] 2025-05-28 14:03:23,780 | INFO     | **************************************
[2025-05-28 16:27:33] 2025-05-28 14:03:24,283 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-05-28 16:27:33] 2025-05-28 14:03:24,484 | INFO     | sufficient remaining disk space (496136880128 B)
[2025-05-28 16:27:33] 2025-05-28 14:03:24,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 16:27:33] 2025-05-28 14:03:24,484 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 16:27:33] 2025-05-28 14:03:24,484 | INFO     | update_server=False
[2025-05-28 16:27:33] 2025-05-28 14:03:24,484 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 16:27:33] 2025-05-28 14:03:24,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 16:27:33] 2025-05-28 14:03:24,486 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 16:27:33] 2025-05-28 14:03:24,486 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 16:27:33] 2025-05-28 14:03:24,486 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 16:27:33] 2025-05-28 14:03:24,486 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 16:27:33] 2025-05-28 14:03:25,231 | INFO     | all job control threads have been joined
[2025-05-28 16:27:33] 2025-05-28 14:03:25,286 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 16:27:33] 2025-05-28 14:03:25,286 | INFO     | aborting loop
[2025-05-28 16:27:33] 2025-05-28 14:03:25,490 | INFO     | [job] retrieve thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:25,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 16:27:33] 2025-05-28 14:03:25,553 | INFO     | all data control threads have been joined
[2025-05-28 16:27:33] 2025-05-28 14:03:25,758 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:25,826 | INFO     | all payload control threads have been joined
[2025-05-28 16:27:33] 2025-05-28 14:03:25,966 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:25,966 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:26,054 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 16:27:33] 2025-05-28 14:03:26,211 | INFO     | [payload] failed_post thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:26,236 | INFO     | [job] control thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:26,292 | INFO     | [job] job monitor thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:26,408 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:26,439 | INFO     | [data] copytool_in thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:26,559 | INFO     | [data] control thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:26,690 | INFO     | [job] validate thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:26,832 | INFO     | [payload] control thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:27,051 | INFO     | [payload] validate_post thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:27,059 | INFO     | [job] queue monitor thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:27,551 | INFO     | [data] copytool_out thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:28,494 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 16:27:33] 2025-05-28 14:03:29,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140036963034944)>', '<ExcThread(monitor, started 140036376872704)>']
[2025-05-28 16:27:33] 2025-05-28 14:03:29,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 16:27:33] 2025-05-28 14:03:29,516 | INFO     | [monitor] control thread has ended
[2025-05-28 16:27:33] 2025-05-28 14:03:34,467 | INFO     | all workflow threads have been joined
[2025-05-28 16:27:33] 2025-05-28 14:03:34,467 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 16:27:33] 2025-05-28 14:03:34,467 | INFO     | traces error code: 0
[2025-05-28 16:27:33] 2025-05-28 14:03:34,468 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 16:27:33] 2025-05-28 14:03:34,668 [wrapper] ==== pilot stdout END ====
[2025-05-28 16:27:33] 2025-05-28 14:03:34,721 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 16:27:33] 2025-05-28 14:03:34,738 [wrapper] pilotpid: 2673
[2025-05-28 16:27:33] 2025-05-28 14:03:34,760 [wrapper] Pilot exit status: 0
[2025-05-28 16:27:33] 2025-05-28 14:03:34,914 [wrapper] pandaids: 6666948520
[2025-05-28 16:27:33] 2025-05-28 14:03:35,328 [wrapper] cleanup supervisor_pilot  5268 2674
[2025-05-28 16:27:33] 2025-05-28 14:03:35,390 [wrapper] Test setup, not cleaning
[2025-05-28 16:27:33] 2025-05-28 14:03:35,453 [wrapper] apfmon messages muted
[2025-05-28 16:27:33] 2025-05-28 14:03:35,523 [wrapper] ==== wrapper stdout END ====
[2025-05-28 16:27:33] 2025-05-28 14:03:35,586 [wrapper] ==== wrapper stderr END ====
[2025-05-28 16:27:33]  *** Error codes and diagnostics ***
[2025-05-28 16:27:33]     "exeErrorCode": 0,
[2025-05-28 16:27:33]     "exeErrorDiag": "",
[2025-05-28 16:27:33]     "pilotErrorCode": 0,
[2025-05-28 16:27:33]     "pilotErrorDiag": "",
[2025-05-28 16:27:33]  *** Listing of results directory ***
[2025-05-28 16:27:33] total 416136
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc    495897 May 27 12:25 pilot3.tar.gz
[2025-05-28 16:27:33] -rwx------. 1 boinc boinc     37140 May 27 12:54 runpilot2-wrapper.sh
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc      5111 May 27 12:54 queuedata.json
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc       100 May 28 10:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 16:27:33] -rwxr-xr-x. 1 boinc boinc      7986 May 28 10:48 run_atlas
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc       105 May 28 10:48 job.xml
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc      6372 May 28 10:48 init_data.xml
[2025-05-28 16:27:33] -rw-r--r--. 2 boinc boinc 224454959 May 28 10:48 EVNT.44871834._001021.pool.root.1
[2025-05-28 16:27:33] -rw-r--r--. 2 boinc boinc     15093 May 28 10:48 start_atlas.sh
[2025-05-28 16:27:33] drwxrwx--x. 2 boinc boinc        68 May 28 10:48 shared
[2025-05-28 16:27:33] -rw-r--r--. 2 boinc boinc    508880 May 28 10:48 input.tar.gz
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc         0 May 28 10:48 boinc_lockfile
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc      2559 May 28 10:48 pandaJob.out
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc    991351 May 28 10:51 agis_schedconf.cvmfs.json
[2025-05-28 16:27:33] drwx------. 4 boinc boinc      4096 May 28 10:51 pilot3
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc 193781159 May 28 16:00 HITS.44871837._066173.pool.root.1
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc       531 May 28 16:00 boinc_task_state.xml
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc      1014 May 28 16:01 memory_monitor_summary.json
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc   1603667 May 28 16:01 agis_ddmendpoints.agis.ALL.json
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc    430978 May 28 16:01 log.44871837._066173.job.log.tgz.1
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc        95 May 28 16:03 pilot_heartbeat.json
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc      7685 May 28 16:03 heartbeat.json
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc      4539 May 28 16:03 pilotlog.txt
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc   1597657 May 28 16:03 log.44871837._066173.job.log.1
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc       357 May 28 16:03 output.list
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc       620 May 28 16:03 runtime_log
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc   2048000 May 28 16:03 result.tar.gz
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc      8659 May 28 16:03 runtime_log.err
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc       656 May 28 16:03 iKCMDmi76d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm3BZKDmFny6nn.diag
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc      8192 May 28 16:27 boinc_mmap_file
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc        28 May 28 16:27 wrapper_checkpoint.txt
[2025-05-28 16:27:33] -rw-r--r--. 1 boinc boinc     20505 May 28 16:27 stderr.txt
[2025-05-28 16:27:33] HITS file was successfully produced:
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc 193781159 May 28 16:00 shared/HITS.pool.root.1
[2025-05-28 16:27:33]  *** Contents of shared directory: ***
[2025-05-28 16:27:33] total 410952
[2025-05-28 16:27:33] -rw-r--r--. 2 boinc boinc 224454959 May 28 10:48 ATLAS.root_0
[2025-05-28 16:27:33] -rw-r--r--. 2 boinc boinc     15093 May 28 10:48 start_atlas.sh
[2025-05-28 16:27:33] -rw-r--r--. 2 boinc boinc    508880 May 28 10:48 input.tar.gz
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc 193781159 May 28 16:00 HITS.pool.root.1
[2025-05-28 16:27:33] -rw-------. 1 boinc boinc   2048000 May 28 16:03 result.tar.gz
16:27:35 (30732): run_atlas exited; CPU time 69155.097081
16:27:35 (30732): called boinc_finish(0)

</stderr_txt>
]]>

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