Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:28:09 (20663): wrapper (7.7.26015): starting
10:28:09 (20663): wrapper: running run_atlas (--nthreads 8)
[2025-05-28 10:28:09] Arguments: --nthreads 8
[2025-05-28 10:28:09] Threads: 8
[2025-05-28 10:28:09] Checking for CVMFS
[2025-05-28 10:28:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 10:28:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 10:28:10] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 10:28:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 10:28:11] 2.11.2.0 1855 22895 97432 146511 1 16 20644528 25165824 4632 130560 0 12804625 99.799 14062311 1784 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-28 10:28:11] CVMFS is ok
[2025-05-28 10:28:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 10:28:11] Checking for apptainer binary...
[2025-05-28 10:28:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 10:28:11] Running /usr/bin/apptainer --version
[2025-05-28 10:28:11] apptainer version 1.3.2-1.el7
[2025-05-28 10:28:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 10:28:55] cg-vwn348.simple-grid.lan
[2025-05-28 10:28:55] apptainer works
[2025-05-28 10:28:55] Set ATHENA_PROC_NUMBER=8
[2025-05-28 10:28:55] Set ATHENA_CORE_NUMBER=8
[2025-05-28 10:28:55] Starting ATLAS job with PandaID=6666948907
[2025-05-28 10:28:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/28 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 15:31:49]  *** The last 200 lines of the pilot log: ***
[2025-05-28 15:31:49] 2025-05-28 13:31:35,227 | INFO     | extracted standard info from prmon json
[2025-05-28 15:31:49] 2025-05-28 13:31:35,227 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 15:31:49] 2025-05-28 13:31:35,227 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 15:31:49] 2025-05-28 13:31:35,228 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 15:31:49] 2025-05-28 13:31:35,228 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 15:31:49] 2025-05-28 13:31:35,234 | INFO     | fitting pss+swap vs Time
[2025-05-28 15:31:49] 2025-05-28 13:31:35,235 | INFO     | sum of square deviations: 7330250928.0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,238 | INFO     | sum of deviations: 96501811570.99997
[2025-05-28 15:31:49] 2025-05-28 13:31:35,238 | INFO     | mean x: 1748430354.0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,239 | INFO     | mean y: 2455088.6724738674
[2025-05-28 15:31:49] 2025-05-28 13:31:35,239 | INFO     | -- intersect: -23015405858.24609
[2025-05-28 15:31:49] 2025-05-28 13:31:35,239 | INFO     | intersect: -23015405858.24609
[2025-05-28 15:31:49] 2025-05-28 13:31:35,239 | INFO     | chi2: 6.7660395919201894
[2025-05-28 15:31:49] 2025-05-28 13:31:35,240 | INFO     | sum of square deviations: 6953769450.5
[2025-05-28 15:31:49] 2025-05-28 13:31:35,243 | INFO     | sum of deviations: 113504934857.0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,243 | INFO     | mean x: 1748430201.5
[2025-05-28 15:31:49] 2025-05-28 13:31:35,243 | INFO     | mean y: 2461866.560283688
[2025-05-28 15:31:49] 2025-05-28 13:31:35,243 | INFO     | -- intersect: -28536801267.76742
[2025-05-28 15:31:49] 2025-05-28 13:31:35,243 | INFO     | intersect: -28536801267.76742
[2025-05-28 15:31:49] 2025-05-28 13:31:35,244 | INFO     | chi2: 6.041967364923021
[2025-05-28 15:31:49] 2025-05-28 13:31:35,244 | INFO     | current chi2=6.041967364923021 (change=10.701566509628979 %)
[2025-05-28 15:31:49] 2025-05-28 13:31:35,244 | INFO     | right removable region: 281
[2025-05-28 15:31:49] 2025-05-28 13:31:35,245 | INFO     | sum of square deviations: 6953769450.5
[2025-05-28 15:31:49] 2025-05-28 13:31:35,247 | INFO     | sum of deviations: -3890788132.000002
[2025-05-28 15:31:49] 2025-05-28 13:31:35,248 | INFO     | mean x: 1748430506.5
[2025-05-28 15:31:49] 2025-05-28 13:31:35,248 | INFO     | mean y: 2495728.829787234
[2025-05-28 15:31:49] 2025-05-28 13:31:35,248 | INFO     | -- intersect: 980781349.7066499
[2025-05-28 15:31:49] 2025-05-28 13:31:35,248 | INFO     | intersect: 980781349.7066499
[2025-05-28 15:31:49] 2025-05-28 13:31:35,249 | INFO     | chi2: 1.9987185864539718
[2025-05-28 15:31:49] 2025-05-28 13:31:35,249 | INFO     | current chi2=1.9987185864539718 (change=70.45954935231558 %)
[2025-05-28 15:31:49] 2025-05-28 13:31:35,249 | INFO     | sum of square deviations: 6590404498.0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,252 | INFO     | sum of deviations: -44415015549.0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,252 | INFO     | mean x: 1748430659.0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,253 | INFO     | mean y: 2512633.606498195
[2025-05-28 15:31:49] 2025-05-28 13:31:35,253 | INFO     | -- intersect: 11785791631.033724
[2025-05-28 15:31:49] 2025-05-28 13:31:35,253 | INFO     | intersect: 11785791631.033724
[2025-05-28 15:31:49] 2025-05-28 13:31:35,253 | INFO     | chi2: 0.9688330524205844
[2025-05-28 15:31:49] 2025-05-28 13:31:35,253 | INFO     | current chi2=0.9688330524205844 (change=51.527290585742726 %)
[2025-05-28 15:31:49] 2025-05-28 13:31:35,254 | INFO     | sum of square deviations: 6239923508.0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,257 | INFO     | sum of deviations: -43802085047.99999
[2025-05-28 15:31:49] 2025-05-28 13:31:35,257 | INFO     | mean x: 1748430811.5
[2025-05-28 15:31:49] 2025-05-28 13:31:35,257 | INFO     | mean y: 2512344.5220588236
[2025-05-28 15:31:49] 2025-05-28 13:31:35,257 | INFO     | -- intersect: 12275886370.290106
[2025-05-28 15:31:49] 2025-05-28 13:31:35,257 | INFO     | intersect: 12275886370.290106
[2025-05-28 15:31:49] 2025-05-28 13:31:35,258 | INFO     | chi2: 0.9541811151726245
[2025-05-28 15:31:49] 2025-05-28 13:31:35,258 | INFO     | current chi2=0.9541811151726245 (change=1.5123283842714381 %)
[2025-05-28 15:31:49] 2025-05-28 13:31:35,258 | INFO     | left removable region: 30
[2025-05-28 15:31:49] 2025-05-28 13:31:35,258 | INFO     | sum of square deviations: 4903347750.0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,261 | INFO     | sum of deviations: 2600883352.000001
[2025-05-28 15:31:49] 2025-05-28 13:31:35,261 | INFO     | mean x: 1748431086.0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,261 | INFO     | mean y: 2506857.784860558
[2025-05-28 15:31:49] 2025-05-28 13:31:35,261 | INFO     | -- intersect: -924913658.8808566
[2025-05-28 15:31:49] 2025-05-28 13:31:35,261 | INFO     | intersect: -924913658.8808566
[2025-05-28 15:31:49] 2025-05-28 13:31:35,262 | INFO     | chi2: 0.05278122691509367
[2025-05-28 15:31:49] 2025-05-28 13:31:35,262 | INFO     | -- intersect: -924913658.8808566
[2025-05-28 15:31:49] 2025-05-28 13:31:35,262 | INFO     | current memory leak: 0.53 B/s (using 251 data points, chi2=0.05)
[2025-05-28 15:31:49] 2025-05-28 13:31:35,263 | INFO     | ..............................
[2025-05-28 15:31:49] 2025-05-28 13:31:35,263 | INFO     | . Timing measurements:
[2025-05-28 15:31:49] 2025-05-28 13:31:35,263 | INFO     | . get job = 0 s
[2025-05-28 15:31:49] 2025-05-28 13:31:35,263 | INFO     | . initial setup = 7 s
[2025-05-28 15:31:49] 2025-05-28 13:31:35,263 | INFO     | . payload setup = 167 s
[2025-05-28 15:31:49] 2025-05-28 13:31:35,264 | INFO     | . stage-in = 0 s
[2025-05-28 15:31:49] 2025-05-28 13:31:35,264 | INFO     | . payload execution = 17604 s
[2025-05-28 15:31:49] 2025-05-28 13:31:35,264 | INFO     | . stage-out = 1 s
[2025-05-28 15:31:49] 2025-05-28 13:31:35,264 | INFO     | . log creation = 0 s
[2025-05-28 15:31:49] 2025-05-28 13:31:35,264 | INFO     | ..............................
[2025-05-28 15:31:49] 2025-05-28 13:31:35,391 | INFO     | 
[2025-05-28 15:31:49] 2025-05-28 13:31:35,392 | INFO     | job summary report
[2025-05-28 15:31:49] 2025-05-28 13:31:35,392 | INFO     | --------------------------------------------------
[2025-05-28 15:31:49] 2025-05-28 13:31:35,392 | INFO     | PanDA job id: 6666948907
[2025-05-28 15:31:49] 2025-05-28 13:31:35,392 | INFO     | task id: 44871837
[2025-05-28 15:31:49] 2025-05-28 13:31:35,392 | INFO     | errors: (none)
[2025-05-28 15:31:49] 2025-05-28 13:31:35,392 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 15:31:49] 2025-05-28 13:31:35,392 | INFO     | pilot state: finished 
[2025-05-28 15:31:49] 2025-05-28 13:31:35,392 | INFO     | transexitcode: 0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | exeerrorcode: 0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | exeerrordiag: 
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | exitcode: 0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | exitmsg: OK
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | cpuconsumptiontime: 66857 s
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | nevents: 400
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | neventsw: 0
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | pid: 4966
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | pgrp: 4966
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | corecount: 8
[2025-05-28 15:31:49] 2025-05-28 13:31:35,393 | INFO     | event service: False
[2025-05-28 15:31:49] 2025-05-28 13:31:35,394 | INFO     | sizes: {0: 2404957, 1: 2405212, 12: 2405212, 23: 2405240, 34: 2405268, 44: 2405296, 55: 2405452, 66: 2405480, 77: 2405508, 83: 2405770, 87: 2405826, 17775: 2437193
[2025-05-28 15:31:49] 2025-05-28 13:31:35,394 | INFO     | --------------------------------------------------
[2025-05-28 15:31:49] 2025-05-28 13:31:35,394 | INFO     | 
[2025-05-28 15:31:49] 2025-05-28 13:31:35,394 | INFO     | executing command: ls -lF /var/lib/boinc/slots/28
[2025-05-28 15:31:49] 2025-05-28 13:31:35,419 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,419 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,419 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,419 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,420 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,420 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,420 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,420 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,420 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,420 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,420 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,420 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,421 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,421 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,421 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,421 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,421 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,421 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 15:31:49] 2025-05-28 13:31:35,421 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,421 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 15:31:49] 2025-05-28 13:31:35,421 | INFO     | job 6666948907 has completed (purged errors)
[2025-05-28 15:31:49] 2025-05-28 13:31:35,422 | INFO     | overall cleanup function is called
[2025-05-28 15:31:49] 2025-05-28 13:31:36,253 | INFO     | 17968s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-05-28 15:31:49] 2025-05-28 13:31:36,426 | INFO     | --- collectZombieJob: --- 10, [4966]
[2025-05-28 15:31:49] 2025-05-28 13:31:36,426 | INFO     | zombie collector waiting for pid 4966
[2025-05-28 15:31:49] 2025-05-28 13:31:36,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 15:31:49] 2025-05-28 13:31:36,426 | INFO     | collected zombie processes
[2025-05-28 15:31:49] 2025-05-28 13:31:36,426 | INFO     | will attempt to kill all subprocesses of pid=4966
[2025-05-28 15:31:49] 2025-05-28 13:31:36,516 | INFO     | process IDs to be killed: [4966] (in reverse order)
[2025-05-28 15:31:49] 2025-05-28 13:31:36,568 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 15:31:49] 2025-05-28 13:31:36,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 15:31:49] 2025-05-28 13:31:36,571 | INFO     | did not find any defunct processes belonging to 4966
[2025-05-28 15:31:49] 2025-05-28 13:31:36,574 | INFO     | did not find any defunct processes belonging to 4966
[2025-05-28 15:31:49] 2025-05-28 13:31:36,574 | INFO     | ready for new job
[2025-05-28 15:31:49] 2025-05-28 13:31:36,574 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 15:31:49] 2025-05-28 13:31:36,576 | INFO     | **************************************
[2025-05-28 15:31:49] 2025-05-28 13:31:36,576 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 15:31:49] 2025-05-28 13:31:36,576 | INFO     | **************************************
[2025-05-28 15:31:49] 2025-05-28 13:31:36,576 | INFO     | 
[2025-05-28 15:31:49] 2025-05-28 13:31:36,577 | INFO     | pilot is running in a VM
[2025-05-28 15:31:49] 2025-05-28 13:31:36,577 | INFO     | architecture information:
[2025-05-28 15:31:49] 2025-05-28 13:31:36,578 | INFO     | executing command: cat /etc/os-release
[2025-05-28 15:31:49] 2025-05-28 13:31:36,596 | INFO     | cat /etc/os-release:
[2025-05-28 15:31:49] NAME="CentOS Linux"
[2025-05-28 15:31:49] VERSION="7 (Core)"
[2025-05-28 15:31:49] ID="centos"
[2025-05-28 15:31:49] ID_LIKE="rhel fedora"
[2025-05-28 15:31:49] VERSION_ID="7"
[2025-05-28 15:31:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 15:31:49] ANSI_COLOR="0;31"
[2025-05-28 15:31:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 15:31:49] HOME_URL="https://www.centos.org/"
[2025-05-28 15:31:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 15:31:49] 
[2025-05-28 15:31:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 15:31:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 15:31:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 15:31:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 15:31:49] 
[2025-05-28 15:31:49] 2025-05-28 13:31:36,597 | INFO     | **************************************
[2025-05-28 15:31:49] 2025-05-28 13:31:37,100 | INFO     | executing command: df -mP /var/lib/boinc/slots/28
[2025-05-28 15:31:49] 2025-05-28 13:31:37,125 | INFO     | sufficient remaining disk space (496056139776 B)
[2025-05-28 15:31:49] 2025-05-28 13:31:37,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 15:31:49] 2025-05-28 13:31:37,126 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 15:31:49] 2025-05-28 13:31:37,126 | INFO     | update_server=False
[2025-05-28 15:31:49] 2025-05-28 13:31:37,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 15:31:49] 2025-05-28 13:31:37,126 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 15:31:49] 2025-05-28 13:31:37,134 | INFO     | all data control threads have been joined
[2025-05-28 15:31:49] 2025-05-28 13:31:37,254 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 15:31:49] 2025-05-28 13:31:37,254 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 15:31:49] 2025-05-28 13:31:37,254 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 15:31:49] 2025-05-28 13:31:37,641 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 15:31:49] 2025-05-28 13:31:37,740 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 15:31:49] 2025-05-28 13:31:37,740 | INFO     | aborting loop
[2025-05-28 15:31:49] 2025-05-28 13:31:38,132 | INFO     | [job] retrieve thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:38,132 | INFO     | [job] queue monitor thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:38,137 | INFO     | [data] control thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:38,306 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:38,436 | INFO     | all job control threads have been joined
[2025-05-28 15:31:49] 2025-05-28 13:31:38,465 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:38,531 | INFO     | all payload control threads have been joined
[2025-05-28 15:31:49] 2025-05-28 13:31:38,700 | INFO     | [payload] failed_post thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:38,742 | INFO     | [job] job monitor thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:38,981 | INFO     | [job] validate thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:39,336 | INFO     | [payload] validate_post thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:39,390 | INFO     | [data] copytool_in thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:39,419 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:39,442 | INFO     | [job] control thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:39,534 | INFO     | [payload] control thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:39,607 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:39,647 | INFO     | [data] copytool_out thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:40,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 15:31:49] 2025-05-28 13:31:44,102 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 15:31:49] 2025-05-28 13:31:44,225 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140473358309184)>', '<ExcThread(monitor, started 140472920033024)>']
[2025-05-28 15:31:49] 2025-05-28 13:31:44,271 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 15:31:49] 2025-05-28 13:31:44,272 | INFO     | [monitor] control thread has ended
[2025-05-28 15:31:49] 2025-05-28 13:31:49,241 | INFO     | all workflow threads have been joined
[2025-05-28 15:31:49] 2025-05-28 13:31:49,241 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 15:31:49] 2025-05-28 13:31:49,241 | INFO     | traces error code: 0
[2025-05-28 15:31:49] 2025-05-28 13:31:49,242 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 15:31:49] 2025-05-28 13:31:49,412 [wrapper] ==== pilot stdout END ====
[2025-05-28 15:31:49] 2025-05-28 13:31:49,416 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 15:31:49] 2025-05-28 13:31:49,420 [wrapper] pilotpid: 28748
[2025-05-28 15:31:49] 2025-05-28 13:31:49,423 [wrapper] Pilot exit status: 0
[2025-05-28 15:31:49] 2025-05-28 13:31:49,439 [wrapper] pandaids: 6666948907
[2025-05-28 15:31:49] 2025-05-28 13:31:49,489 [wrapper] cleanup supervisor_pilot  6590 28749
[2025-05-28 15:31:49] 2025-05-28 13:31:49,501 [wrapper] Test setup, not cleaning
[2025-05-28 15:31:49] 2025-05-28 13:31:49,506 [wrapper] apfmon messages muted
[2025-05-28 15:31:49] 2025-05-28 13:31:49,509 [wrapper] ==== wrapper stdout END ====
[2025-05-28 15:31:49] 2025-05-28 13:31:49,513 [wrapper] ==== wrapper stderr END ====
[2025-05-28 15:31:49]  *** Error codes and diagnostics ***
[2025-05-28 15:31:49]     "exeErrorCode": 0,
[2025-05-28 15:31:49]     "exeErrorDiag": "",
[2025-05-28 15:31:49]     "pilotErrorCode": 0,
[2025-05-28 15:31:49]     "pilotErrorDiag": "",
[2025-05-28 15:31:49]  *** Listing of results directory ***
[2025-05-28 15:31:49] total 413680
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc    495897 May 27 12:25 pilot3.tar.gz
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc      5111 May 27 13:08 queuedata.json
[2025-05-28 15:31:49] -rwx------. 1 boinc boinc     37140 May 27 13:11 runpilot2-wrapper.sh
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc       100 May 28 10:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 15:31:49] -rwxr-xr-x. 1 boinc boinc      7986 May 28 10:28 run_atlas
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc       105 May 28 10:28 job.xml
[2025-05-28 15:31:49] -rw-r--r--. 2 boinc boinc 225911412 May 28 10:28 EVNT.44871834._002617.pool.root.1
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc      6372 May 28 10:28 init_data.xml
[2025-05-28 15:31:49] -rw-r--r--. 2 boinc boinc     15093 May 28 10:28 start_atlas.sh
[2025-05-28 15:31:49] drwxrwx--x. 2 boinc boinc        68 May 28 10:28 shared
[2025-05-28 15:31:49] -rw-r--r--. 2 boinc boinc    508873 May 28 10:28 input.tar.gz
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc         0 May 28 10:28 boinc_lockfile
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc      2558 May 28 10:28 pandaJob.out
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc    991351 May 28 10:32 agis_schedconf.cvmfs.json
[2025-05-28 15:31:49] drwx------. 4 boinc boinc      4096 May 28 10:32 pilot3
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc 189990398 May 28 15:30 HITS.44871837._066468.pool.root.1
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc       531 May 28 15:31 boinc_task_state.xml
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc        95 May 28 15:31 pilot_heartbeat.json
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc      1021 May 28 15:31 memory_monitor_summary.json
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc   1603667 May 28 15:31 agis_ddmendpoints.agis.ALL.json
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc    410036 May 28 15:31 log.44871837._066468.job.log.tgz.1
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc      7695 May 28 15:31 heartbeat.json
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc      8192 May 28 15:31 boinc_mmap_file
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc        28 May 28 15:31 wrapper_checkpoint.txt
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc      4417 May 28 15:31 pilotlog.txt
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc   1524853 May 28 15:31 log.44871837._066468.job.log.1
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc       357 May 28 15:31 output.list
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc       620 May 28 15:31 runtime_log
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc   1955840 May 28 15:31 result.tar.gz
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc      8673 May 28 15:31 runtime_log.err
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc       657 May 28 15:31 cZmLDmrO7d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTFZKDm21UG5n.diag
[2025-05-28 15:31:49] -rw-r--r--. 1 boinc boinc     20500 May 28 15:31 stderr.txt
[2025-05-28 15:31:49] HITS file was successfully produced:
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc 189990398 May 28 15:30 shared/HITS.pool.root.1
[2025-05-28 15:31:49]  *** Contents of shared directory: ***
[2025-05-28 15:31:49] total 408588
[2025-05-28 15:31:49] -rw-r--r--. 2 boinc boinc 225911412 May 28 10:28 ATLAS.root_0
[2025-05-28 15:31:49] -rw-r--r--. 2 boinc boinc     15093 May 28 10:28 start_atlas.sh
[2025-05-28 15:31:49] -rw-r--r--. 2 boinc boinc    508873 May 28 10:28 input.tar.gz
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc 189990398 May 28 15:30 HITS.pool.root.1
[2025-05-28 15:31:49] -rw-------. 1 boinc boinc   1955840 May 28 15:31 result.tar.gz
15:31:51 (20663): run_atlas exited; CPU time 67097.544958
15:31:51 (20663): called boinc_finish(0)

</stderr_txt>
]]>

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