Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
aborted by project - no longer usable</message>
<stderr_txt>
23:43:39 (869247): wrapper (7.7.26015): starting
23:43:39 (869247): wrapper: running run_atlas (--nthreads 4)
[2025-05-28 23:43:39] Arguments: --nthreads 4
[2025-05-28 23:43:39] Threads: 4
[2025-05-28 23:43:39] Checking for CVMFS
[2025-05-28 23:43:39] No cvmfs_config command found, will try listing directly
[2025-05-28 23:43:39] CVMFS is ok
[2025-05-28 23:43:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-28 23:43:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-28 23:43:39] Further information can be found at the LHC@home message board.
[2025-05-28 23:43:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 23:43:39] Checking for apptainer binary...
[2025-05-28 23:43:39] which: no apptainer in ((null))
[2025-05-28 23:43:39] apptainer is not installed, using version from CVMFS
[2025-05-28 23:43:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 23:43:39] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-05-28 23:43:39] apptainer works
[2025-05-28 23:43:39] Set ATHENA_PROC_NUMBER=4
[2025-05-28 23:43:39] Set ATHENA_CORE_NUMBER=4
[2025-05-28 23:43:39] Starting ATLAS job with PandaID=6667201129
[2025-05-28 23:43:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:10:59 (1626657): wrapper (7.7.26015): starting
09:10:59 (1626657): wrapper: running run_atlas (--nthreads 4)
[2025-05-29 09:10:59] Arguments: --nthreads 4
[2025-05-29 09:10:59] Threads: 4
[2025-05-29 09:10:59] This job has been restarted, cleaning up previous attempt
[2025-05-29 09:10:59] Checking for CVMFS
[2025-05-29 09:10:59] No cvmfs_config command found, will try listing directly
[2025-05-29 09:10:59] CVMFS is ok
[2025-05-29 09:10:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 09:10:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 09:10:59] Further information can be found at the LHC@home message board.
[2025-05-29 09:10:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 09:10:59] Checking for apptainer binary...
[2025-05-29 09:10:59] which: no apptainer in ((null))
[2025-05-29 09:10:59] apptainer is not installed, using version from CVMFS
[2025-05-29 09:10:59] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 09:10:59] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-05-29 09:10:59] apptainer works
[2025-05-29 09:10:59] Set ATHENA_PROC_NUMBER=4
[2025-05-29 09:10:59] Set ATHENA_CORE_NUMBER=4
[2025-05-29 09:10:59] Starting ATLAS job with PandaID=6667201129
[2025-05-29 09:10:59] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 09:22:52] Job failed
[2025-05-29 09:22:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-05-29 09:22:52] ++ pwd
[2025-05-29 09:22:52] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot12/slots/0/
[2025-05-29 09:22:52] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot12/slots/0/
[2025-05-29 09:22:52] + mv ATLAS.root_0 EVNT.44871834._002722.pool.root.1
[2025-05-29 09:22:52] mv: 'ATLAS.root_0' and 'EVNT.44871834._002722.pool.root.1' are the same file
[2025-05-29 09:22:52] + tar --strip-components=5 -xvf input.tar.gz
[2025-05-29 09:22:52] + umask 077
[2025-05-29 09:22:52] ++ date +%s
[2025-05-29 09:22:52] + ACCOUNTING_STARTTIME=1748502659
[2025-05-29 09:22:52] + echo 'Detecting resource accounting method available for the job.'
[2025-05-29 09:22:52] Detecting resource accounting method available for the job.
[2025-05-29 09:22:52] + JOB_ACCOUNTING=
[2025-05-29 09:22:52] + command -v arc-job-cgroup
[2025-05-29 09:22:52] + '[' -z '' ']'
[2025-05-29 09:22:52] + GNU_TIME=/usr/bin/time
[2025-05-29 09:22:52] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-05-29 09:22:52] Looking for /usr/bin/time tool for accounting measurements
[2025-05-29 09:22:52] + '[' '!' -z /usr/bin/time ']'
[2025-05-29 09:22:52] + /usr/bin/time --version
[2025-05-29 09:22:52] + echo 'GNU time found and will be used for job accounting.'
[2025-05-29 09:22:52] GNU time found and will be used for job accounting.
[2025-05-29 09:22:52] + JOB_ACCOUNTING=gnutime
[2025-05-29 09:22:52] + '[' -z gnutime ']'
[2025-05-29 09:22:52] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-29 09:22:52] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-29 09:22:52] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667201129.out
[2025-05-29 09:22:52] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667201129.out
[2025-05-29 09:22:52] + export PILOT_NOKILL=YES
[2025-05-29 09:22:52] + PILOT_NOKILL=YES
[2025-05-29 09:22:52] + export GRID_GLOBAL_JOBID=IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-05-29 09:22:52] + GRID_GLOBAL_JOBID=IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-05-29 09:22:52] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-05-29 09:22:52] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-05-29 09:22:52] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-29 09:22:52] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-29 09:22:52] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-05-29 09:22:52] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-05-29 09:22:52] ++ pwd
[2025-05-29 09:22:52] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot12/slots/0
[2025-05-29 09:22:52] + RUNTIME_JOB_STDIN=/dev/null
[2025-05-29 09:22:52] ++ pwd
[2025-05-29 09:22:52] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot12/slots/0/log.44871837._069250.job.log.1
[2025-05-29 09:22:52] ++ pwd
[2025-05-29 09:22:52] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot12/slots/0/log.44871837._069250.job.log.1
[2025-05-29 09:22:52] ++ pwd
[2025-05-29 09:22:52] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot12/slots/0.diag
[2025-05-29 09:22:52] + '[' '!' -z '' ']'
[2025-05-29 09:22:52] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-05-29 09:22:52] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-05-29 09:22:52] + RUNTIME_FRONTEND_SEES_NODE=
[2025-05-29 09:22:52] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-05-29 09:22:52] + '[' '!' -z '' ']'
[2025-05-29 09:22:52] + '[' -z yes ']'
[2025-05-29 09:22:52] ++ pwd
[2025-05-29 09:22:52] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag
[2025-05-29 09:22:52] + runtimeenvironments=
[2025-05-29 09:22:52] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-29 09:22:52] + RTE_function_0 1
[2025-05-29 09:22:52] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 09:22:52] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 09:22:52] + export BOINC_APP=ATLAS
[2025-05-29 09:22:52] + BOINC_APP=ATLAS
[2025-05-29 09:22:52] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 09:22:52] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 09:22:52] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 09:22:52] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 09:22:52] + '[' -z 1 ']'
[2025-05-29 09:22:52] + '[' 1 == 1 ']'
[2025-05-29 09:22:52] + shift
[2025-05-29 09:22:52] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot12/slots/0/
[2025-05-29 09:22:52] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot12/slots/0/
[2025-05-29 09:22:52] + '[' 0 -ne 0 ']'
[2025-05-29 09:22:52] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-05-29 09:22:52] + '[' -f /etc/os-release ']'
[2025-05-29 09:22:52] +++ cat /etc/os-release
[2025-05-29 09:22:52] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-05-29 09:22:52] +++ NAME='CentOS Linux'
[2025-05-29 09:22:52] +++ VERSION='7 (Core)'
[2025-05-29 09:22:52] +++ ID=centos
[2025-05-29 09:22:52] +++ ID_LIKE='rhel fedora'
[2025-05-29 09:22:52] +++ VERSION_ID=7
[2025-05-29 09:22:52] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-05-29 09:22:52] +++ ANSI_COLOR='0;31'
[2025-05-29 09:22:52] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-05-29 09:22:52] +++ HOME_URL=https://www.centos.org/
[2025-05-29 09:22:52] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-05-29 09:22:52] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-05-29 09:22:52] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-05-29 09:22:52] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-05-29 09:22:52] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-05-29 09:22:52] ++ echo 'CentOS Linux 7 (Core)'
[2025-05-29 09:22:52] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-05-29 09:22:52] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-05-29 09:22:52] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-05-29 09:22:52] + HOME=/scratch/boinc/var/slot12/slots/0
[2025-05-29 09:22:52] + export HOME
[2025-05-29 09:22:52] + cd /scratch/boinc/var/slot12/slots/0
[2025-05-29 09:22:52] + '[' '!' -z '' ']'
[2025-05-29 09:22:52] + '[' -z '' ']'
[2025-05-29 09:22:52] ++ /bin/hostname -f
[2025-05-29 09:22:52] + nodename=skurut26.grid.cesnet.cz
[2025-05-29 09:22:52] + echo nodename=skurut26.grid.cesnet.cz
[2025-05-29 09:22:52] + echo Processors=2
[2025-05-29 09:22:52] + echo Nodecount=1
[2025-05-29 09:22:52] + echo Benchmark=HEPSPEC:1.0
[2025-05-29 09:22:52] + executable=./runpilot2-wrapper.sh
[2025-05-29 09:22:52] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-05-29 09:22:52] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-05-29 09:22:52] ++ head -n 1
[2025-05-29 09:22:52] ++ tr -d '\0'
[2025-05-29 09:22:52] + line1='#!/bin/bash'
[2025-05-29 09:22:52] ++ echo '#!/bin/bash'
[2025-05-29 09:22:52] ++ sed -n 's/^#! *//p'
[2025-05-29 09:22:52] + shebang=/bin/bash
[2025-05-29 09:22:52] ++ echo /bin/bash
[2025-05-29 09:22:52] ++ awk '{print $1}'
[2025-05-29 09:22:52] + interpreter=/bin/bash
[2025-05-29 09:22:52] + '[' /bin/bash = /usr/bin/env ']'
[2025-05-29 09:22:52] + '[' x/bin/bash = x ']'
[2025-05-29 09:22:52] + type /bin/bash
[2025-05-29 09:22:52] + '[' xgnutime = xgnutime ']'
[2025-05-29 09:22:52] + /usr/bin/time -o /scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-05-29 09:22:52] + RESULT=2
[2025-05-29 09:22:52] + sed -i -e /nodename=/d /scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag
[2025-05-29 09:22:52] ++ awk -F '>' '{print $2}'
[2025-05-29 09:22:52] ++ grep domain_name init_data.xml
[2025-05-29 09:22:52] ++ awk -F '<' '{print $1}'
[2025-05-29 09:22:52] ++ sed -e 's# #_#g'
[2025-05-29 09:22:52] + hostname=skurut26.grid.cesnet.cz
[2025-05-29 09:22:52] ++ grep user_name init_data.xml
[2025-05-29 09:22:52] ++ awk -F '<' '{print $1}'
[2025-05-29 09:22:52] ++ sed -e 's# #_#g'
[2025-05-29 09:22:52] ++ awk -F '>' '{print $2}'
[2025-05-29 09:22:52] + username=praguelcg2
[2025-05-29 09:22:52] + nodename=praguelcg2@skurut26.grid.cesnet.cz
[2025-05-29 09:22:52] + echo nodename=praguelcg2@skurut26.grid.cesnet.cz
[2025-05-29 09:22:52] + '[' -n 4 ']'
[2025-05-29 09:22:52] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag
[2025-05-29 09:22:52] + echo exitcode=2
[2025-05-29 09:22:52] + runtimeenvironments=
[2025-05-29 09:22:52] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-29 09:22:52] + RTE_function_0 2
[2025-05-29 09:22:52] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 09:22:52] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 09:22:52] + export BOINC_APP=ATLAS
[2025-05-29 09:22:52] + BOINC_APP=ATLAS
[2025-05-29 09:22:52] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 09:22:52] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 09:22:52] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 09:22:52] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 09:22:52] + '[' -z 2 ']'
[2025-05-29 09:22:52] + '[' 2 == 1 ']'
[2025-05-29 09:22:52] + '[' 0 -ne 0 ']'
[2025-05-29 09:22:52] + echo 'zip all output files'
[2025-05-29 09:22:52] + flist='*.diag '
[2025-05-29 09:22:52] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-05-29 09:22:52] + '[' -e ./heartbeat.json ']'
[2025-05-29 09:22:52] + flist='*.diag  ./heartbeat.json'
[2025-05-29 09:22:52] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-05-29 09:22:52] + '[' -e ./output.list ']'
[2025-05-29 09:22:52] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-05-29 09:22:52] + '[' -e ./log.44871837._069250.job.log.1 ']'
[2025-05-29 09:22:52] + flist='*.diag  ./heartbeat.json ./log.44871837._069250.job.log.1'
[2025-05-29 09:22:52] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-05-29 09:22:52] + '[' -e ./log.44871837._069250.job.log.1 ']'
[2025-05-29 09:22:52] + flist='*.diag  ./heartbeat.json ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1'
[2025-05-29 09:22:52] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-05-29 09:22:52] + '[' -e ./gmlog/ ']'
[2025-05-29 09:22:52] + '[' -f output.list ']'
[2025-05-29 09:22:52] + tar cvf result.tar.gz IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag ./heartbeat.json ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1
[2025-05-29 09:22:52] + '[' xgnutime = xcgroup ']'
[2025-05-29 09:22:52] + '[' -n '' ']'
[2025-05-29 09:22:52] + '[' -n '' ']'
[2025-05-29 09:22:52] ++ date +%s
[2025-05-29 09:22:52] + ACCOUNTING_ENDTIME=1748502846
[2025-05-29 09:22:52] ++ date -d '1970-01-01 UTC 1748502659 seconds' +%Y%m%d%H%M%SZ
[2025-05-29 09:22:52] + echo LRMSStartTime=20250529091059Z
[2025-05-29 09:22:52] ++ date -d '1970-01-01 UTC 1748502846 seconds' +%Y%m%d%H%M%SZ
[2025-05-29 09:22:52] + echo LRMSEndTime=20250529091406Z
[2025-05-29 09:22:52] + echo walltime=187
[2025-05-29 09:22:52] + echo exitcode=2
[2025-05-29 09:22:52] + exit 2
[2025-05-29 09:22:52] ./PanDA_Pilot-6667201129/prmon.log
[2025-05-29 09:22:52] ./PanDA_Pilot-6667201129/PoolFileCatalog.xml
[2025-05-29 09:22:52] ./PanDA_Pilot-6667201129/pilotlog.txt
[2025-05-29 09:22:52] ./PanDA_Pilot-6667201129/log.EVNTtoHITS
[2025-05-29 09:22:52] ./log.44871837._069250.job.log.1
[2025-05-29 09:22:52] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-05-29 09:22:52] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-05-29 09:22:52] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-05-29 09:22:52] ./pilot3/pilot/util/loggingsupport.py
[2025-05-29 09:22:52] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-05-29 09:22:52] ./pilot3/pilot/util/realtimelogger.py
[2025-05-29 09:22:52] ./runtime_log
[2025-05-29 09:22:52] ./runtime_log.err
[2025-05-29 09:22:52] ./pilotlog.txt
16:42:14 (2265512): wrapper (7.7.26015): starting
16:42:14 (2265512): wrapper: running run_atlas (--nthreads 4)
[2025-05-29 16:42:14] Arguments: --nthreads 4
[2025-05-29 16:42:14] Threads: 4
[2025-05-29 16:42:14] This job has been restarted, cleaning up previous attempt
[2025-05-29 16:42:14] Checking for CVMFS
[2025-05-29 16:42:14] No cvmfs_config command found, will try listing directly
[2025-05-29 16:42:14] CVMFS is ok
[2025-05-29 16:42:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 16:42:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 16:42:14] Further information can be found at the LHC@home message board.
[2025-05-29 16:42:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 16:42:14] Checking for apptainer binary...
[2025-05-29 16:42:14] which: no apptainer in ((null))
[2025-05-29 16:42:14] apptainer is not installed, using version from CVMFS
[2025-05-29 16:42:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 16:42:14] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-05-29 16:42:14] apptainer works
[2025-05-29 16:42:14] Set ATHENA_PROC_NUMBER=4
[2025-05-29 16:42:14] Set ATHENA_CORE_NUMBER=4
[2025-05-29 16:42:14] Starting ATLAS job with PandaID=6667201129
[2025-05-29 16:42:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:43:15 (13008): wrapper (7.7.26015): starting
07:43:15 (13008): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 07:43:15] Arguments: --nthreads 4
[2025-06-03 07:43:15] Threads: 4
[2025-06-03 07:43:15] This job has been restarted, cleaning up previous attempt
[2025-06-03 07:43:15] Checking for CVMFS
[2025-06-03 07:43:15] No cvmfs_config command found, will try listing directly
[2025-06-03 07:43:16] CVMFS is ok
[2025-06-03 07:43:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 07:43:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 07:43:16] Further information can be found at the LHC@home message board.
[2025-06-03 07:43:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 07:43:16] Checking for apptainer binary...
[2025-06-03 07:43:16] which: no apptainer in ((null))
[2025-06-03 07:43:16] apptainer is not installed, using version from CVMFS
[2025-06-03 07:43:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 07:43:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-06-03 07:43:17] apptainer works
[2025-06-03 07:43:18] Set ATHENA_PROC_NUMBER=4
[2025-06-03 07:43:18] Set ATHENA_CORE_NUMBER=4
[2025-06-03 07:43:18] Starting ATLAS job with PandaID=6667201129
[2025-06-03 07:43:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 07:46:30] Job failed
[2025-06-03 07:46:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 07:46:30] ++ pwd
[2025-06-03 07:46:30] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot12/slots/0/
[2025-06-03 07:46:30] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot12/slots/0/
[2025-06-03 07:46:30] + mv ATLAS.root_0 EVNT.44871834._002722.pool.root.1
[2025-06-03 07:46:30] mv: 'ATLAS.root_0' and 'EVNT.44871834._002722.pool.root.1' are the same file
[2025-06-03 07:46:30] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 07:46:30] + umask 077
[2025-06-03 07:46:30] ++ date +%s
[2025-06-03 07:46:30] + ACCOUNTING_STARTTIME=1748929398
[2025-06-03 07:46:30] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 07:46:30] Detecting resource accounting method available for the job.
[2025-06-03 07:46:30] + JOB_ACCOUNTING=
[2025-06-03 07:46:30] + command -v arc-job-cgroup
[2025-06-03 07:46:30] + '[' -z '' ']'
[2025-06-03 07:46:30] + GNU_TIME=/usr/bin/time
[2025-06-03 07:46:30] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 07:46:30] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 07:46:30] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 07:46:30] + /usr/bin/time --version
[2025-06-03 07:46:30] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 07:46:30] GNU time found and will be used for job accounting.
[2025-06-03 07:46:30] + JOB_ACCOUNTING=gnutime
[2025-06-03 07:46:30] + '[' -z gnutime ']'
[2025-06-03 07:46:30] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 07:46:30] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 07:46:30] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667201129.out
[2025-06-03 07:46:30] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667201129.out
[2025-06-03 07:46:30] + export PILOT_NOKILL=YES
[2025-06-03 07:46:30] + PILOT_NOKILL=YES
[2025-06-03 07:46:30] + export GRID_GLOBAL_JOBID=IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-06-03 07:46:30] + GRID_GLOBAL_JOBID=IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-06-03 07:46:30] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-06-03 07:46:30] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-06-03 07:46:30] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 07:46:30] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 07:46:30] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 07:46:30] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 07:46:30] ++ pwd
[2025-06-03 07:46:30] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot12/slots/0
[2025-06-03 07:46:30] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 07:46:30] ++ pwd
[2025-06-03 07:46:30] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot12/slots/0/log.44871837._069250.job.log.1
[2025-06-03 07:46:30] ++ pwd
[2025-06-03 07:46:30] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot12/slots/0/log.44871837._069250.job.log.1
[2025-06-03 07:46:30] ++ pwd
[2025-06-03 07:46:30] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot12/slots/0.diag
[2025-06-03 07:46:30] + '[' '!' -z '' ']'
[2025-06-03 07:46:30] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 07:46:30] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 07:46:30] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 07:46:30] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 07:46:30] + '[' '!' -z '' ']'
[2025-06-03 07:46:30] + '[' -z yes ']'
[2025-06-03 07:46:30] ++ pwd
[2025-06-03 07:46:30] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag
[2025-06-03 07:46:30] + runtimeenvironments=
[2025-06-03 07:46:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 07:46:30] + RTE_function_0 1
[2025-06-03 07:46:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 07:46:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 07:46:30] + export BOINC_APP=ATLAS
[2025-06-03 07:46:30] + BOINC_APP=ATLAS
[2025-06-03 07:46:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 07:46:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 07:46:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 07:46:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 07:46:30] + '[' -z 1 ']'
[2025-06-03 07:46:30] + '[' 1 == 1 ']'
[2025-06-03 07:46:30] + shift
[2025-06-03 07:46:30] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot12/slots/0/
[2025-06-03 07:46:30] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot12/slots/0/
[2025-06-03 07:46:30] + '[' 0 -ne 0 ']'
[2025-06-03 07:46:30] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 07:46:30] + '[' -f /etc/os-release ']'
[2025-06-03 07:46:30] +++ cat /etc/os-release
[2025-06-03 07:46:30] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 07:46:30] +++ NAME='CentOS Linux'
[2025-06-03 07:46:30] +++ VERSION='7 (Core)'
[2025-06-03 07:46:30] +++ ID=centos
[2025-06-03 07:46:30] +++ ID_LIKE='rhel fedora'
[2025-06-03 07:46:30] +++ VERSION_ID=7
[2025-06-03 07:46:30] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 07:46:30] +++ ANSI_COLOR='0;31'
[2025-06-03 07:46:30] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 07:46:30] +++ HOME_URL=https://www.centos.org/
[2025-06-03 07:46:30] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 07:46:30] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 07:46:30] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 07:46:30] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 07:46:30] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 07:46:30] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 07:46:30] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 07:46:30] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 07:46:30] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 07:46:30] + HOME=/scratch/boinc/var/slot12/slots/0
[2025-06-03 07:46:30] + export HOME
[2025-06-03 07:46:30] + cd /scratch/boinc/var/slot12/slots/0
[2025-06-03 07:46:30] + '[' '!' -z '' ']'
[2025-06-03 07:46:30] + '[' -z '' ']'
[2025-06-03 07:46:30] ++ /bin/hostname -f
[2025-06-03 07:46:30] + nodename=skurut26.grid.cesnet.cz
[2025-06-03 07:46:30] + echo nodename=skurut26.grid.cesnet.cz
[2025-06-03 07:46:30] + echo Processors=2
[2025-06-03 07:46:30] + echo Nodecount=1
[2025-06-03 07:46:30] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 07:46:30] + executable=./runpilot2-wrapper.sh
[2025-06-03 07:46:30] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 07:46:30] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 07:46:30] ++ head -n 1
[2025-06-03 07:46:30] ++ tr -d '\0'
[2025-06-03 07:46:30] + line1='#!/bin/bash'
[2025-06-03 07:46:30] ++ echo '#!/bin/bash'
[2025-06-03 07:46:30] ++ sed -n 's/^#! *//p'
[2025-06-03 07:46:30] + shebang=/bin/bash
[2025-06-03 07:46:30] ++ echo /bin/bash
[2025-06-03 07:46:30] ++ awk '{print $1}'
[2025-06-03 07:46:30] + interpreter=/bin/bash
[2025-06-03 07:46:30] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 07:46:30] + '[' x/bin/bash = x ']'
[2025-06-03 07:46:30] + type /bin/bash
[2025-06-03 07:46:30] + '[' xgnutime = xgnutime ']'
[2025-06-03 07:46:30] + /usr/bin/time -o /scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 07:46:30] + RESULT=2
[2025-06-03 07:46:30] + sed -i -e /nodename=/d /scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag
[2025-06-03 07:46:30] ++ grep domain_name init_data.xml
[2025-06-03 07:46:30] ++ awk -F '>' '{print $2}'
[2025-06-03 07:46:30] ++ awk -F '<' '{print $1}'
[2025-06-03 07:46:30] ++ sed -e 's# #_#g'
[2025-06-03 07:46:30] + hostname=skurut26.grid.cesnet.cz
[2025-06-03 07:46:30] ++ grep user_name init_data.xml
[2025-06-03 07:46:30] ++ awk -F '>' '{print $2}'
[2025-06-03 07:46:30] ++ awk -F '<' '{print $1}'
[2025-06-03 07:46:30] ++ sed -e 's# #_#g'
[2025-06-03 07:46:30] + username=praguelcg2
[2025-06-03 07:46:30] + nodename=praguelcg2@skurut26.grid.cesnet.cz
[2025-06-03 07:46:30] + echo nodename=praguelcg2@skurut26.grid.cesnet.cz
[2025-06-03 07:46:30] + '[' -n 4 ']'
[2025-06-03 07:46:30] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag
[2025-06-03 07:46:30] + echo exitcode=2
[2025-06-03 07:46:30] + runtimeenvironments=
[2025-06-03 07:46:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 07:46:30] + RTE_function_0 2
[2025-06-03 07:46:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 07:46:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 07:46:30] + export BOINC_APP=ATLAS
[2025-06-03 07:46:30] + BOINC_APP=ATLAS
[2025-06-03 07:46:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 07:46:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 07:46:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 07:46:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 07:46:30] + '[' -z 2 ']'
[2025-06-03 07:46:30] + '[' 2 == 1 ']'
[2025-06-03 07:46:30] + '[' 0 -ne 0 ']'
[2025-06-03 07:46:30] + echo 'zip all output files'
[2025-06-03 07:46:30] + flist='*.diag '
[2025-06-03 07:46:30] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 07:46:30] + '[' -e ./heartbeat.json ']'
[2025-06-03 07:46:30] + flist='*.diag  ./heartbeat.json'
[2025-06-03 07:46:30] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 07:46:30] + '[' -e ./output.list ']'
[2025-06-03 07:46:30] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 07:46:30] + '[' -e ./log.44871837._069250.job.log.1 ']'
[2025-06-03 07:46:30] + flist='*.diag  ./heartbeat.json ./log.44871837._069250.job.log.1'
[2025-06-03 07:46:30] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 07:46:30] + '[' -e ./log.44871837._069250.job.log.1 ']'
[2025-06-03 07:46:30] + flist='*.diag  ./heartbeat.json ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1'
[2025-06-03 07:46:30] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 07:46:30] + '[' -e ./gmlog/ ']'
[2025-06-03 07:46:30] + '[' -f output.list ']'
[2025-06-03 07:46:30] + tar cvf result.tar.gz IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag ./heartbeat.json ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1
[2025-06-03 07:46:30] + '[' xgnutime = xcgroup ']'
[2025-06-03 07:46:30] + '[' -n '' ']'
[2025-06-03 07:46:30] + '[' -n '' ']'
[2025-06-03 07:46:30] ++ date +%s
[2025-06-03 07:46:30] + ACCOUNTING_ENDTIME=1748929590
[2025-06-03 07:46:30] ++ date -d '1970-01-01 UTC 1748929398 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 07:46:30] + echo LRMSStartTime=20250603074318Z
[2025-06-03 07:46:30] ++ date -d '1970-01-01 UTC 1748929590 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 07:46:30] + echo LRMSEndTime=20250603074630Z
[2025-06-03 07:46:30] + echo walltime=192
[2025-06-03 07:46:30] + echo exitcode=2
[2025-06-03 07:46:30] + exit 2
[2025-06-03 07:46:30] ./PanDA_Pilot-6667201129/prmon.log
[2025-06-03 07:46:30] ./PanDA_Pilot-6667201129/PoolFileCatalog.xml
[2025-06-03 07:46:30] ./PanDA_Pilot-6667201129/pilotlog.txt
[2025-06-03 07:46:30] ./PanDA_Pilot-6667201129/log.EVNTtoHITS
[2025-06-03 07:46:30] ./log.44871837._069250.job.log.1
[2025-06-03 07:46:30] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 07:46:30] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 07:46:30] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 07:46:30] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 07:46:30] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 07:46:30] ./pilot3/pilot/util/realtimelogger.py
[2025-06-03 07:46:30] ./runtime_log
[2025-06-03 07:46:30] ./runtime_log.err
[2025-06-03 07:46:30] ./pilotlog.txt
08:32:43 (249528): wrapper (7.7.26015): starting
08:32:43 (249528): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 08:32:43] Arguments: --nthreads 4
[2025-06-03 08:32:43] Threads: 4
[2025-06-03 08:32:43] This job has been restarted, cleaning up previous attempt
[2025-06-03 08:32:43] Checking for CVMFS
[2025-06-03 08:32:43] No cvmfs_config command found, will try listing directly
[2025-06-03 08:32:43] CVMFS is ok
[2025-06-03 08:32:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 08:32:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 08:32:43] Further information can be found at the LHC@home message board.
[2025-06-03 08:32:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:32:43] Checking for apptainer binary...
[2025-06-03 08:32:43] which: no apptainer in ((null))
[2025-06-03 08:32:43] apptainer is not installed, using version from CVMFS
[2025-06-03 08:32:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:32:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-06-03 08:32:43] apptainer works
[2025-06-03 08:32:43] Set ATHENA_PROC_NUMBER=4
[2025-06-03 08:32:43] Set ATHENA_CORE_NUMBER=4
[2025-06-03 08:32:43] Starting ATLAS job with PandaID=6667201129
[2025-06-03 08:32:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:45:47 (340756): wrapper (7.7.26015): starting
08:45:47 (340756): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 08:45:47] Arguments: --nthreads 4
[2025-06-03 08:45:47] Threads: 4
[2025-06-03 08:45:47] This job has been restarted, cleaning up previous attempt
[2025-06-03 08:45:47] Checking for CVMFS
[2025-06-03 08:45:47] No cvmfs_config command found, will try listing directly
[2025-06-03 08:45:47] CVMFS is ok
[2025-06-03 08:45:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 08:45:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 08:45:47] Further information can be found at the LHC@home message board.
[2025-06-03 08:45:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:45:47] Checking for apptainer binary...
[2025-06-03 08:45:47] which: no apptainer in ((null))
[2025-06-03 08:45:47] apptainer is not installed, using version from CVMFS
[2025-06-03 08:45:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:45:47] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-06-03 08:45:47] apptainer works
[2025-06-03 08:45:47] Set ATHENA_PROC_NUMBER=4
[2025-06-03 08:45:47] Set ATHENA_CORE_NUMBER=4
[2025-06-03 08:45:47] Starting ATLAS job with PandaID=6667201129
[2025-06-03 08:45:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:44:45 (426447): wrapper (7.7.26015): starting
09:44:45 (426447): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 09:44:45] Arguments: --nthreads 4
[2025-06-03 09:44:45] Threads: 4
[2025-06-03 09:44:45] This job has been restarted, cleaning up previous attempt
[2025-06-03 09:44:45] Checking for CVMFS
[2025-06-03 09:44:45] No cvmfs_config command found, will try listing directly
[2025-06-03 09:44:45] CVMFS is ok
[2025-06-03 09:44:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 09:44:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 09:44:45] Further information can be found at the LHC@home message board.
[2025-06-03 09:44:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 09:44:45] Checking for apptainer binary...
[2025-06-03 09:44:45] which: no apptainer in ((null))
[2025-06-03 09:44:45] apptainer is not installed, using version from CVMFS
[2025-06-03 09:44:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 09:44:45] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-06-03 09:44:45] apptainer works
[2025-06-03 09:44:45] Set ATHENA_PROC_NUMBER=4
[2025-06-03 09:44:45] Set ATHENA_CORE_NUMBER=4
[2025-06-03 09:44:45] Starting ATLAS job with PandaID=6667201129
[2025-06-03 09:44:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:58:01 (781797): wrapper (7.7.26015): starting
14:58:01 (781797): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 14:58:01] Arguments: --nthreads 4
[2025-06-03 14:58:01] Threads: 4
[2025-06-03 14:58:01] This job has been restarted, cleaning up previous attempt
[2025-06-03 14:58:01] Checking for CVMFS
[2025-06-03 14:58:01] No cvmfs_config command found, will try listing directly
[2025-06-03 14:58:01] CVMFS is ok
[2025-06-03 14:58:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 14:58:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 14:58:02] Further information can be found at the LHC@home message board.
[2025-06-03 14:58:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 14:58:02] Checking for apptainer binary...
[2025-06-03 14:58:02] which: no apptainer in ((null))
[2025-06-03 14:58:02] apptainer is not installed, using version from CVMFS
[2025-06-03 14:58:02] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 14:58:02] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-06-03 14:58:02] apptainer works
[2025-06-03 14:58:02] Set ATHENA_PROC_NUMBER=4
[2025-06-03 14:58:02] Set ATHENA_CORE_NUMBER=4
[2025-06-03 14:58:02] Starting ATLAS job with PandaID=6667201129
[2025-06-03 14:58:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 15:02:23] Job failed
[2025-06-03 15:02:23] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 15:02:23] ++ pwd
[2025-06-03 15:02:23] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot12/slots/0/
[2025-06-03 15:02:23] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot12/slots/0/
[2025-06-03 15:02:23] + mv ATLAS.root_0 EVNT.44871834._002722.pool.root.1
[2025-06-03 15:02:23] mv: 'ATLAS.root_0' and 'EVNT.44871834._002722.pool.root.1' are the same file
[2025-06-03 15:02:23] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 15:02:23] + umask 077
[2025-06-03 15:02:23] ++ date +%s
[2025-06-03 15:02:23] + ACCOUNTING_STARTTIME=1748955482
[2025-06-03 15:02:23] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 15:02:23] Detecting resource accounting method available for the job.
[2025-06-03 15:02:23] + JOB_ACCOUNTING=
[2025-06-03 15:02:23] + command -v arc-job-cgroup
[2025-06-03 15:02:23] + '[' -z '' ']'
[2025-06-03 15:02:23] + GNU_TIME=/usr/bin/time
[2025-06-03 15:02:23] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 15:02:23] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 15:02:23] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 15:02:23] + /usr/bin/time --version
[2025-06-03 15:02:23] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 15:02:23] GNU time found and will be used for job accounting.
[2025-06-03 15:02:23] + JOB_ACCOUNTING=gnutime
[2025-06-03 15:02:23] + '[' -z gnutime ']'
[2025-06-03 15:02:23] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 15:02:23] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 15:02:23] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667201129.out
[2025-06-03 15:02:23] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667201129.out
[2025-06-03 15:02:23] + export PILOT_NOKILL=YES
[2025-06-03 15:02:23] + PILOT_NOKILL=YES
[2025-06-03 15:02:23] + export GRID_GLOBAL_JOBID=IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-06-03 15:02:23] + GRID_GLOBAL_JOBID=IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-06-03 15:02:23] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-06-03 15:02:23] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm
[2025-06-03 15:02:23] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 15:02:23] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 15:02:23] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 15:02:23] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 15:02:23] ++ pwd
[2025-06-03 15:02:23] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot12/slots/0
[2025-06-03 15:02:23] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 15:02:23] ++ pwd
[2025-06-03 15:02:23] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot12/slots/0/log.44871837._069250.job.log.1
[2025-06-03 15:02:23] ++ pwd
[2025-06-03 15:02:23] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot12/slots/0/log.44871837._069250.job.log.1
[2025-06-03 15:02:23] ++ pwd
[2025-06-03 15:02:23] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot12/slots/0.diag
[2025-06-03 15:02:23] + '[' '!' -z '' ']'
[2025-06-03 15:02:23] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 15:02:23] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 15:02:23] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 15:02:23] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 15:02:23] + '[' '!' -z '' ']'
[2025-06-03 15:02:23] + '[' -z yes ']'
[2025-06-03 15:02:23] ++ pwd
[2025-06-03 15:02:23] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag
[2025-06-03 15:02:23] + runtimeenvironments=
[2025-06-03 15:02:23] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 15:02:23] + RTE_function_0 1
[2025-06-03 15:02:23] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 15:02:23] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 15:02:23] + export BOINC_APP=ATLAS
[2025-06-03 15:02:23] + BOINC_APP=ATLAS
[2025-06-03 15:02:23] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 15:02:23] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 15:02:23] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 15:02:23] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 15:02:23] + '[' -z 1 ']'
[2025-06-03 15:02:23] + '[' 1 == 1 ']'
[2025-06-03 15:02:23] + shift
[2025-06-03 15:02:23] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot12/slots/0/
[2025-06-03 15:02:23] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot12/slots/0/
[2025-06-03 15:02:23] + '[' 0 -ne 0 ']'
[2025-06-03 15:02:23] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 15:02:23] + '[' -f /etc/os-release ']'
[2025-06-03 15:02:23] +++ cat /etc/os-release
[2025-06-03 15:02:23] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 15:02:23] +++ NAME='CentOS Linux'
[2025-06-03 15:02:23] +++ VERSION='7 (Core)'
[2025-06-03 15:02:23] +++ ID=centos
[2025-06-03 15:02:23] +++ ID_LIKE='rhel fedora'
[2025-06-03 15:02:23] +++ VERSION_ID=7
[2025-06-03 15:02:23] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 15:02:23] +++ ANSI_COLOR='0;31'
[2025-06-03 15:02:23] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 15:02:23] +++ HOME_URL=https://www.centos.org/
[2025-06-03 15:02:23] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 15:02:23] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 15:02:23] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 15:02:23] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 15:02:23] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 15:02:23] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 15:02:23] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 15:02:23] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 15:02:23] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 15:02:23] + HOME=/scratch/boinc/var/slot12/slots/0
[2025-06-03 15:02:23] + export HOME
[2025-06-03 15:02:23] + cd /scratch/boinc/var/slot12/slots/0
[2025-06-03 15:02:23] + '[' '!' -z '' ']'
[2025-06-03 15:02:23] + '[' -z '' ']'
[2025-06-03 15:02:23] ++ /bin/hostname -f
[2025-06-03 15:02:23] + nodename=skurut26.grid.cesnet.cz
[2025-06-03 15:02:23] + echo nodename=skurut26.grid.cesnet.cz
[2025-06-03 15:02:23] + echo Processors=2
[2025-06-03 15:02:23] + echo Nodecount=1
[2025-06-03 15:02:23] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 15:02:23] + executable=./runpilot2-wrapper.sh
[2025-06-03 15:02:23] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 15:02:23] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 15:02:23] ++ tr -d '\0'
[2025-06-03 15:02:23] ++ head -n 1
[2025-06-03 15:02:23] + line1='#!/bin/bash'
[2025-06-03 15:02:23] ++ echo '#!/bin/bash'
[2025-06-03 15:02:23] ++ sed -n 's/^#! *//p'
[2025-06-03 15:02:23] + shebang=/bin/bash
[2025-06-03 15:02:23] ++ echo /bin/bash
[2025-06-03 15:02:23] ++ awk '{print $1}'
[2025-06-03 15:02:23] + interpreter=/bin/bash
[2025-06-03 15:02:23] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 15:02:23] + '[' x/bin/bash = x ']'
[2025-06-03 15:02:23] + type /bin/bash
[2025-06-03 15:02:23] + '[' xgnutime = xgnutime ']'
[2025-06-03 15:02:23] + /usr/bin/time -o /scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 15:02:23] + RESULT=2
[2025-06-03 15:02:23] + sed -i -e /nodename=/d /scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag
[2025-06-03 15:02:23] ++ grep domain_name init_data.xml
[2025-06-03 15:02:23] ++ awk -F '<' '{print $1}'
[2025-06-03 15:02:23] ++ sed -e 's# #_#g'
[2025-06-03 15:02:23] ++ awk -F '>' '{print $2}'
[2025-06-03 15:02:23] + hostname=skurut26.grid.cesnet.cz
[2025-06-03 15:02:23] ++ grep user_name init_data.xml
[2025-06-03 15:02:23] ++ sed -e 's# #_#g'
[2025-06-03 15:02:23] ++ awk -F '>' '{print $2}'
[2025-06-03 15:02:23] ++ awk -F '<' '{print $1}'
[2025-06-03 15:02:23] + username=praguelcg2
[2025-06-03 15:02:23] + nodename=praguelcg2@skurut26.grid.cesnet.cz
[2025-06-03 15:02:23] + echo nodename=praguelcg2@skurut26.grid.cesnet.cz
[2025-06-03 15:02:23] + '[' -n 4 ']'
[2025-06-03 15:02:23] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot12/slots/0/IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag
[2025-06-03 15:02:23] + echo exitcode=2
[2025-06-03 15:02:23] + runtimeenvironments=
[2025-06-03 15:02:23] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 15:02:23] + RTE_function_0 2
[2025-06-03 15:02:23] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 15:02:23] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 15:02:23] + export BOINC_APP=ATLAS
[2025-06-03 15:02:23] + BOINC_APP=ATLAS
[2025-06-03 15:02:23] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 15:02:23] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 15:02:23] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 15:02:23] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 15:02:23] + '[' -z 2 ']'
[2025-06-03 15:02:23] + '[' 2 == 1 ']'
[2025-06-03 15:02:23] + '[' 0 -ne 0 ']'
[2025-06-03 15:02:23] + echo 'zip all output files'
[2025-06-03 15:02:23] + flist='*.diag '
[2025-06-03 15:02:23] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 15:02:23] + '[' -e ./heartbeat.json ']'
[2025-06-03 15:02:23] + flist='*.diag  ./heartbeat.json'
[2025-06-03 15:02:23] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 15:02:23] + '[' -e ./output.list ']'
[2025-06-03 15:02:23] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 15:02:23] + '[' -e ./log.44871837._069250.job.log.1 ']'
[2025-06-03 15:02:23] + flist='*.diag  ./heartbeat.json ./log.44871837._069250.job.log.1'
[2025-06-03 15:02:23] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 15:02:23] + '[' -e ./log.44871837._069250.job.log.1 ']'
[2025-06-03 15:02:23] + flist='*.diag  ./heartbeat.json ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1'
[2025-06-03 15:02:23] + for f in ./heartbeat.json ./output.list ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1 ./gmlog/
[2025-06-03 15:02:23] + '[' -e ./gmlog/ ']'
[2025-06-03 15:02:23] + '[' -f output.list ']'
[2025-06-03 15:02:23] + tar cvf result.tar.gz IX3NDmpyAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgiZKDmXBtRpm.diag ./heartbeat.json ./log.44871837._069250.job.log.1 ./log.44871837._069250.job.log.1
[2025-06-03 15:02:23] + '[' xgnutime = xcgroup ']'
[2025-06-03 15:02:23] + '[' -n '' ']'
[2025-06-03 15:02:23] + '[' -n '' ']'
[2025-06-03 15:02:23] ++ date +%s
[2025-06-03 15:02:23] + ACCOUNTING_ENDTIME=1748955669
[2025-06-03 15:02:23] ++ date -d '1970-01-01 UTC 1748955482 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 15:02:23] + echo LRMSStartTime=20250603145802Z
[2025-06-03 15:02:23] ++ date -d '1970-01-01 UTC 1748955669 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 15:02:23] + echo LRMSEndTime=20250603150109Z
[2025-06-03 15:02:23] + echo walltime=187
[2025-06-03 15:02:23] + echo exitcode=2
[2025-06-03 15:02:23] + exit 2
[2025-06-03 15:02:23] ./PanDA_Pilot-6667201129/prmon.log
[2025-06-03 15:02:23] ./PanDA_Pilot-6667201129/PoolFileCatalog.xml
[2025-06-03 15:02:23] ./PanDA_Pilot-6667201129/pilotlog.txt
[2025-06-03 15:02:23] ./PanDA_Pilot-6667201129/log.EVNTtoHITS
[2025-06-03 15:02:23] ./log.44871837._069250.job.log.1
[2025-06-03 15:02:23] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 15:02:23] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 15:02:23] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 15:02:23] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 15:02:23] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 15:02:23] ./pilot3/pilot/util/realtimelogger.py
[2025-06-03 15:02:23] ./runtime_log
[2025-06-03 15:02:23] ./runtime_log.err
[2025-06-03 15:02:23] ./pilotlog.txt
01:01:54 (2847643): wrapper (7.7.26015): starting
01:01:54 (2847643): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 01:01:54] Arguments: --nthreads 4
[2025-06-05 01:01:54] Threads: 4
[2025-06-05 01:01:54] This job has been restarted, cleaning up previous attempt
[2025-06-05 01:01:54] Checking for CVMFS
[2025-06-05 01:01:54] No cvmfs_config command found, will try listing directly
[2025-06-05 01:01:54] CVMFS is ok
[2025-06-05 01:01:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 01:01:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 01:01:54] Further information can be found at the LHC@home message board.
[2025-06-05 01:01:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 01:01:54] Checking for apptainer binary...
[2025-06-05 01:01:54] which: no apptainer in ((null))
[2025-06-05 01:01:54] apptainer is not installed, using version from CVMFS
[2025-06-05 01:01:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 01:01:54] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot12/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-06-05 01:01:54] apptainer works
[2025-06-05 01:01:54] Set ATHENA_PROC_NUMBER=4
[2025-06-05 01:01:54] Set ATHENA_CORE_NUMBER=4
[2025-06-05 01:01:54] Starting ATLAS job with PandaID=6667201129
[2025-06-05 01:01:54] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot12/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh

</stderr_txt>
]]>

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