Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
23:00:02 (536633): wrapper (7.7.26015): starting
23:00:02 (536633): wrapper: running run_atlas (--nthreads 12)
[2025-05-27 23:00:02] Arguments: --nthreads 12
[2025-05-27 23:00:02] Threads: 12
[2025-05-27 23:00:02] Checking for CVMFS
[2025-05-27 23:00:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 23:00:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 23:00:04] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 23:00:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 23:00:06] 2.12.7.0 39975 5237 179188 146497 3 187 3587268 4096000 16475 130560 0 53936585 99.999 1385455 935 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.230:3128 1
[2025-05-27 23:00:06] CVMFS is ok
[2025-05-27 23:00:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 23:00:06] Checking for apptainer binary...
[2025-05-27 23:00:06] apptainer is not installed, using version from CVMFS
[2025-05-27 23:00:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 23:00:07] epyc7v12
[2025-05-27 23:00:07] apptainer works
[2025-05-27 23:00:07] Set ATHENA_PROC_NUMBER=12
[2025-05-27 23:00:07] Set ATHENA_CORE_NUMBER=12
[2025-05-27 23:00:07] Starting ATLAS job with PandaID=6667102079
[2025-05-27 23:00:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/19 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 01:38:37]  *** The last 200 lines of the pilot log: ***
[2025-05-28 01:38:37] 2025-05-28 01:38:13,604 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 01:38:37] 2025-05-28 01:38:13,607 | INFO     | fitting pss+swap vs Time
[2025-05-28 01:38:37] 2025-05-28 01:38:13,607 | INFO     | sum of square deviations: 1005187962.0270271
[2025-05-28 01:38:37] 2025-05-28 01:38:13,608 | INFO     | sum of deviations: 70833780650.83788
[2025-05-28 01:38:37] 2025-05-28 01:38:13,608 | INFO     | mean x: 1748391693.5810812
[2025-05-28 01:38:37] 2025-05-28 01:38:13,613 | INFO     | mean y: 2518789.5135135134
[2025-05-28 01:38:37] 2025-05-28 01:38:13,613 | INFO     | -- intersect: -123203486846.61382
[2025-05-28 01:38:37] 2025-05-28 01:38:13,613 | INFO     | intersect: -123203486846.61382
[2025-05-28 01:38:37] 2025-05-28 01:38:13,613 | INFO     | chi2: 6.3276367927929416
[2025-05-28 01:38:37] 2025-05-28 01:38:13,613 | INFO     | sum of square deviations: 906715356.9930075
[2025-05-28 01:38:37] 2025-05-28 01:38:13,614 | INFO     | sum of deviations: 78985087352.4895
[2025-05-28 01:38:37] 2025-05-28 01:38:13,614 | INFO     | mean x: 1748391541.0839162
[2025-05-28 01:38:37] 2025-05-28 01:38:13,615 | INFO     | mean y: 2530940.125874126
[2025-05-28 01:38:37] 2025-05-28 01:38:13,615 | INFO     | -- intersect: -152302001605.6175
[2025-05-28 01:38:37] 2025-05-28 01:38:13,615 | INFO     | intersect: -152302001605.6175
[2025-05-28 01:38:37] 2025-05-28 01:38:13,615 | INFO     | chi2: 5.508584225354453
[2025-05-28 01:38:37] 2025-05-28 01:38:13,615 | INFO     | current chi2=5.508584225354453 (change=12.94405153550175 %)
[2025-05-28 01:38:37] 2025-05-28 01:38:13,615 | INFO     | right removable region: 142
[2025-05-28 01:38:37] 2025-05-28 01:38:13,616 | INFO     | sum of square deviations: 906708036.9930075
[2025-05-28 01:38:37] 2025-05-28 01:38:13,621 | INFO     | sum of deviations: 19262674036.356644
[2025-05-28 01:38:37] 2025-05-28 01:38:13,621 | INFO     | mean x: 1748391846.0839162
[2025-05-28 01:38:37] 2025-05-28 01:38:13,621 | INFO     | mean y: 2598502.72027972
[2025-05-28 01:38:37] 2025-05-28 01:38:13,621 | INFO     | -- intersect: -37141334102.78506
[2025-05-28 01:38:37] 2025-05-28 01:38:13,621 | INFO     | intersect: -37141334102.78506
[2025-05-28 01:38:37] 2025-05-28 01:38:13,621 | INFO     | chi2: 1.7206378852413382
[2025-05-28 01:38:37] 2025-05-28 01:38:13,622 | INFO     | current chi2=1.7206378852413382 (change=72.80757506181278 %)
[2025-05-28 01:38:37] 2025-05-28 01:38:13,622 | INFO     | sum of square deviations: 814879399.4565233
[2025-05-28 01:38:37] 2025-05-28 01:38:13,629 | INFO     | sum of deviations: -590028342.8260899
[2025-05-28 01:38:37] 2025-05-28 01:38:13,629 | INFO     | mean x: 1748391998.5869565
[2025-05-28 01:38:37] 2025-05-28 01:38:13,629 | INFO     | mean y: 2631205.652173913
[2025-05-28 01:38:37] 2025-05-28 01:38:13,629 | INFO     | -- intersect: 1268586430.7132988
[2025-05-28 01:38:37] 2025-05-28 01:38:13,629 | INFO     | intersect: 1268586430.7132988
[2025-05-28 01:38:37] 2025-05-28 01:38:13,630 | INFO     | chi2: 1.0059177666402268
[2025-05-28 01:38:37] 2025-05-28 01:38:13,630 | INFO     | current chi2=1.0059177666402268 (change=41.53809030543717 %)
[2025-05-28 01:38:37] 2025-05-28 01:38:13,630 | INFO     | sum of square deviations: 729469486.917293
[2025-05-28 01:38:37] 2025-05-28 01:38:13,631 | INFO     | sum of deviations: -7050740572.293232
[2025-05-28 01:38:37] 2025-05-28 01:38:13,631 | INFO     | mean x: 1748392151.0902255
[2025-05-28 01:38:37] 2025-05-28 01:38:13,631 | INFO     | mean y: 2642608.77443609
[2025-05-28 01:38:37] 2025-05-28 01:38:13,631 | INFO     | -- intersect: 16901854566.311153
[2025-05-28 01:38:37] 2025-05-28 01:38:13,631 | INFO     | intersect: 16901854566.311153
[2025-05-28 01:38:37] 2025-05-28 01:38:13,632 | INFO     | chi2: 0.9150185809040967
[2025-05-28 01:38:37] 2025-05-28 01:38:13,632 | INFO     | current chi2=0.9150185809040967 (change=9.036443012606695 %)
[2025-05-28 01:38:37] 2025-05-28 01:38:13,632 | INFO     | left removable region: 30
[2025-05-28 01:38:37] 2025-05-28 01:38:13,632 | INFO     | sum of square deviations: 435600644.7142866
[2025-05-28 01:38:37] 2025-05-28 01:38:13,633 | INFO     | sum of deviations: 1715907687.6428573
[2025-05-28 01:38:37] 2025-05-28 01:38:13,633 | INFO     | mean x: 1748392425.607143
[2025-05-28 01:38:37] 2025-05-28 01:38:13,633 | INFO     | mean y: 2663205.1964285714
[2025-05-28 01:38:37] 2025-05-28 01:38:13,633 | INFO     | -- intersect: -6884562607.069326
[2025-05-28 01:38:37] 2025-05-28 01:38:13,633 | INFO     | intersect: -6884562607.069326
[2025-05-28 01:38:37] 2025-05-28 01:38:13,633 | INFO     | chi2: 0.00021185426600699685
[2025-05-28 01:38:37] 2025-05-28 01:38:13,634 | INFO     | -- intersect: -6884562607.069326
[2025-05-28 01:38:37] 2025-05-28 01:38:13,634 | INFO     | current memory leak: 3.94 B/s (using 112 data points, chi2=0.00)
[2025-05-28 01:38:37] 2025-05-28 01:38:13,634 | INFO     | ..............................
[2025-05-28 01:38:37] 2025-05-28 01:38:13,634 | INFO     | . Timing measurements:
[2025-05-28 01:38:37] 2025-05-28 01:38:13,634 | INFO     | . get job = 0 s
[2025-05-28 01:38:37] 2025-05-28 01:38:13,635 | INFO     | . initial setup = 8 s
[2025-05-28 01:38:37] 2025-05-28 01:38:13,635 | INFO     | . payload setup = 126 s
[2025-05-28 01:38:37] 2025-05-28 01:38:13,635 | INFO     | . stage-in = 0 s
[2025-05-28 01:38:37] 2025-05-28 01:38:13,635 | INFO     | . payload execution = 9079 s
[2025-05-28 01:38:37] 2025-05-28 01:38:13,635 | INFO     | . stage-out = 2 s
[2025-05-28 01:38:37] 2025-05-28 01:38:13,635 | INFO     | . log creation = 0 s
[2025-05-28 01:38:37] 2025-05-28 01:38:13,635 | INFO     | ..............................
[2025-05-28 01:38:37] 2025-05-28 01:38:14,057 | INFO     | 
[2025-05-28 01:38:37] 2025-05-28 01:38:14,057 | INFO     | job summary report
[2025-05-28 01:38:37] 2025-05-28 01:38:14,057 | INFO     | --------------------------------------------------
[2025-05-28 01:38:37] 2025-05-28 01:38:14,057 | INFO     | PanDA job id: 6667102079
[2025-05-28 01:38:37] 2025-05-28 01:38:14,057 | INFO     | task id: 44871837
[2025-05-28 01:38:37] 2025-05-28 01:38:14,057 | INFO     | errors: (none)
[2025-05-28 01:38:37] 2025-05-28 01:38:14,057 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | pilot state: finished 
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | transexitcode: 0
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | exeerrorcode: 0
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | exeerrordiag: 
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | exitcode: 0
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | exitmsg: OK
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | cpuconsumptiontime: 55977 s
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | nevents: 400
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | neventsw: 0
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | pid: 568158
[2025-05-28 01:38:37] 2025-05-28 01:38:14,058 | INFO     | pgrp: 568158
[2025-05-28 01:38:37] 2025-05-28 01:38:14,059 | INFO     | corecount: 12
[2025-05-28 01:38:37] 2025-05-28 01:38:14,059 | INFO     | event service: False
[2025-05-28 01:38:37] 2025-05-28 01:38:14,059 | INFO     | sizes: {0: 2404406, 1: 2405115, 2: 2405314, 3: 2405314, 13: 2405342, 24: 2405398, 35: 2405554, 46: 2405582, 56: 2405610, 67: 2405638, 70: 2405872, 78: 2406180, 921
[2025-05-28 01:38:37] 2025-05-28 01:38:14,059 | INFO     | --------------------------------------------------
[2025-05-28 01:38:37] 2025-05-28 01:38:14,059 | INFO     | 
[2025-05-28 01:38:37] 2025-05-28 01:38:14,059 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/19
[2025-05-28 01:38:37] 2025-05-28 01:38:14,121 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,122 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,122 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,122 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,122 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,122 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,122 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,122 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,122 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,122 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,123 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,123 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,123 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,123 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,123 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,123 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,123 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,123 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 01:38:37] 2025-05-28 01:38:14,123 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,124 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 01:38:37] 2025-05-28 01:38:14,124 | INFO     | job 6667102079 has completed (purged errors)
[2025-05-28 01:38:37] 2025-05-28 01:38:14,124 | INFO     | overall cleanup function is called
[2025-05-28 01:38:37] 2025-05-28 01:38:14,795 | INFO     | PID=547342 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-05-28 01:38:37] 2025-05-28 01:38:14,795 | INFO     | .. there are 20 such processes running
[2025-05-28 01:38:37] 2025-05-28 01:38:15,141 | INFO     | --- collectZombieJob: --- 10, [568158]
[2025-05-28 01:38:37] 2025-05-28 01:38:15,141 | INFO     | zombie collector waiting for pid 568158
[2025-05-28 01:38:37] 2025-05-28 01:38:15,141 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 01:38:37] 2025-05-28 01:38:15,141 | INFO     | collected zombie processes
[2025-05-28 01:38:37] 2025-05-28 01:38:15,141 | INFO     | will attempt to kill all subprocesses of pid=568158
[2025-05-28 01:38:37] 2025-05-28 01:38:16,031 | INFO     | process IDs to be killed: [568158] (in reverse order)
[2025-05-28 01:38:37] 2025-05-28 01:38:18,421 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 01:38:37] 2025-05-28 01:38:18,421 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 01:38:37] 2025-05-28 01:38:18,460 | INFO     | did not find any defunct processes belonging to 568158
[2025-05-28 01:38:37] 2025-05-28 01:38:18,494 | INFO     | did not find any defunct processes belonging to 568158
[2025-05-28 01:38:37] 2025-05-28 01:38:18,494 | INFO     | ready for new job
[2025-05-28 01:38:37] 2025-05-28 01:38:18,494 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 01:38:37] 2025-05-28 01:38:18,496 | INFO     | **************************************
[2025-05-28 01:38:37] 2025-05-28 01:38:18,496 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 01:38:37] 2025-05-28 01:38:18,497 | INFO     | **************************************
[2025-05-28 01:38:37] 2025-05-28 01:38:18,497 | INFO     | 
[2025-05-28 01:38:37] 2025-05-28 01:38:18,538 | INFO     | architecture information:
[2025-05-28 01:38:37] 2025-05-28 01:38:18,553 | INFO     | executing command: cat /etc/os-release
[2025-05-28 01:38:37] 2025-05-28 01:38:18,705 | INFO     | cat /etc/os-release:
[2025-05-28 01:38:37] NAME="CentOS Linux"
[2025-05-28 01:38:37] VERSION="7 (Core)"
[2025-05-28 01:38:37] ID="centos"
[2025-05-28 01:38:37] ID_LIKE="rhel fedora"
[2025-05-28 01:38:37] VERSION_ID="7"
[2025-05-28 01:38:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 01:38:37] ANSI_COLOR="0;31"
[2025-05-28 01:38:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 01:38:37] HOME_URL="https://www.centos.org/"
[2025-05-28 01:38:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 01:38:37] 
[2025-05-28 01:38:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 01:38:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 01:38:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 01:38:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 01:38:37] 
[2025-05-28 01:38:37] 2025-05-28 01:38:18,705 | INFO     | **************************************
[2025-05-28 01:38:37] 2025-05-28 01:38:19,209 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/19
[2025-05-28 01:38:37] 2025-05-28 01:38:19,265 | INFO     | sufficient remaining disk space (330389520384 B)
[2025-05-28 01:38:37] 2025-05-28 01:38:19,265 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 01:38:37] 2025-05-28 01:38:19,265 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 01:38:37] 2025-05-28 01:38:19,266 | INFO     | update_server=False
[2025-05-28 01:38:37] 2025-05-28 01:38:19,266 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 01:38:37] 2025-05-28 01:38:19,266 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 01:38:37] 2025-05-28 01:38:19,269 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 01:38:37] 2025-05-28 01:38:19,269 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 01:38:37] 2025-05-28 01:38:19,269 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 01:38:37] 2025-05-28 01:38:19,270 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 01:38:37] 2025-05-28 01:38:19,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 01:38:37] 2025-05-28 01:38:19,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 01:38:37] 2025-05-28 01:38:19,653 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-28 01:38:37] 2025-05-28 01:38:19,653 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-28 01:38:37] 2025-05-28 01:38:19,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 01:38:37] 2025-05-28 01:38:19,653 | INFO     | will abort loop
[2025-05-28 01:38:37] 2025-05-28 01:38:19,981 | INFO     | all payload control threads have been joined
[2025-05-28 01:38:37] 2025-05-28 01:38:20,111 | INFO     | all data control threads have been joined
[2025-05-28 01:38:37] 2025-05-28 01:38:20,248 | INFO     | all job control threads have been joined
[2025-05-28 01:38:37] 2025-05-28 01:38:20,273 | INFO     | [job] retrieve thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:20,273 | INFO     | [job] queue monitor thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:20,377 | INFO     | [payload] failed_post thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:20,641 | INFO     | [data] copytool_in thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:20,661 | INFO     | [job] job monitor thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:20,737 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:20,969 | INFO     | [payload] validate_post thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:20,985 | INFO     | [payload] control thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:21,073 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:21,113 | INFO     | [data] control thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:21,229 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:21,257 | INFO     | [job] control thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:21,473 | INFO     | [data] copytool_out thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:21,741 | INFO     | [job] validate thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:23,643 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:29,545 | INFO     | job.realtimelogging is not enabled
[2025-05-28 01:38:37] 2025-05-28 01:38:30,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 01:38:37] 2025-05-28 01:38:30,917 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139697323992896)>', '<ExcThread(monitor, started 139696738912000)>']
[2025-05-28 01:38:37] 2025-05-28 01:38:31,345 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 01:38:37] 2025-05-28 01:38:31,345 | INFO     | [monitor] control thread has ended
[2025-05-28 01:38:37] 2025-05-28 01:38:35,941 | INFO     | all workflow threads have been joined
[2025-05-28 01:38:37] 2025-05-28 01:38:35,941 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 01:38:37] 2025-05-28 01:38:35,941 | INFO     | traces error code: 0
[2025-05-28 01:38:37] 2025-05-28 01:38:35,942 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 01:38:37] 2025-05-28 01:38:36,177 [wrapper] ==== pilot stdout END ====
[2025-05-28 01:38:37] 2025-05-28 01:38:36,189 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 01:38:37] 2025-05-28 01:38:36,238 [wrapper] pilotpid: 547342
[2025-05-28 01:38:37] 2025-05-28 01:38:36,260 [wrapper] Pilot exit status: 0
[2025-05-28 01:38:37] 2025-05-28 01:38:36,405 [wrapper] pandaids: 6667102079
[2025-05-28 01:38:37] 2025-05-28 01:38:36,729 [wrapper] cleanup supervisor_pilot 1127266 547343
[2025-05-28 01:38:37] 2025-05-28 01:38:36,761 [wrapper] Test setup, not cleaning
[2025-05-28 01:38:37] 2025-05-28 01:38:36,817 [wrapper] apfmon messages muted
[2025-05-28 01:38:37] 2025-05-28 01:38:36,845 [wrapper] ==== wrapper stdout END ====
[2025-05-28 01:38:37] 2025-05-28 01:38:36,889 [wrapper] ==== wrapper stderr END ====
[2025-05-28 01:38:37]  *** Error codes and diagnostics ***
[2025-05-28 01:38:37]     "exeErrorCode": 0,
[2025-05-28 01:38:37]     "exeErrorDiag": "",
[2025-05-28 01:38:37]     "pilotErrorCode": 0,
[2025-05-28 01:38:37]     "pilotErrorDiag": "",
[2025-05-28 01:38:37]  *** Listing of results directory ***
[2025-05-28 01:38:37] total 410280
[2025-05-28 01:38:37] -rw-r--r-- 1 boinc boinc    495897 May 27 13:43 pilot3.tar.gz
[2025-05-28 01:38:37] -rwx------ 1 boinc boinc     37140 May 27 14:21 runpilot2-wrapper.sh
[2025-05-28 01:38:37] -rw-r--r-- 1 boinc boinc      5111 May 27 14:21 queuedata.json
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc       100 May 27 23:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 01:38:37] -rwxr-xr-x 1 boinc boinc      7986 May 27 23:00 run_atlas
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc       105 May 27 23:00 job.xml
[2025-05-28 01:38:37] -rw-r--r-- 2 boinc boinc     15093 May 27 23:00 start_atlas.sh
[2025-05-28 01:38:37] drwxrwx--x 2 boinc boinc      4096 May 27 23:00 shared
[2025-05-28 01:38:37] -rw-r--r-- 2 boinc boinc    508878 May 27 23:00 input.tar.gz
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc      6949 May 27 23:00 init_data.xml
[2025-05-28 01:38:37] -rw-r--r-- 2 boinc boinc 222936079 May 27 23:00 EVNT.44871834._002699.pool.root.1
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc         0 May 27 23:00 boinc_lockfile
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc      2559 May 27 23:00 pandaJob.out
[2025-05-28 01:38:37] -rw------- 1 boinc boinc    991177 May 27 23:01 agis_schedconf.cvmfs.json
[2025-05-28 01:38:37] -rw------- 1 boinc boinc   1603667 May 27 23:01 agis_ddmendpoints.agis.ALL.json
[2025-05-28 01:38:37] drwx------ 4 boinc boinc      4096 May 27 23:01 pilot3
[2025-05-28 01:38:37] -rw------- 1 boinc boinc 190805999 May 28 01:36 HITS.44871837._068643.pool.root.1
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc       530 May 28 01:36 boinc_task_state.xml
[2025-05-28 01:38:37] -rw------- 1 boinc boinc      1024 May 28 01:37 memory_monitor_summary.json
[2025-05-28 01:38:37] -rw------- 1 boinc boinc    418693 May 28 01:37 log.44871837._068643.job.log.tgz.1
[2025-05-28 01:38:37] -rw------- 1 boinc boinc        95 May 28 01:37 pilot_heartbeat.json
[2025-05-28 01:38:37] -rw------- 1 boinc boinc      7651 May 28 01:38 heartbeat.json
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc        27 May 28 01:38 wrapper_checkpoint.txt
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc      8192 May 28 01:38 boinc_mmap_file
[2025-05-28 01:38:37] -rw------- 1 boinc boinc      4759 May 28 01:38 pilotlog.txt
[2025-05-28 01:38:37] -rw------- 1 boinc boinc    852591 May 28 01:38 log.44871837._068643.job.log.1
[2025-05-28 01:38:37] -rw------- 1 boinc boinc       357 May 28 01:38 output.list
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc       620 May 28 01:38 runtime_log
[2025-05-28 01:38:37] -rw------- 1 boinc boinc   1290240 May 28 01:38 result.tar.gz
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc      8977 May 28 01:38 runtime_log.err
[2025-05-28 01:38:37] -rw------- 1 boinc boinc       652 May 28 01:38 KdqMDmqMAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7cZKDmYhQRxm.diag
[2025-05-28 01:38:37] -rw-rw-r-- 1 boinc boinc     20829 May 28 01:38 stderr.txt
[2025-05-28 01:38:37] HITS file was successfully produced:
[2025-05-28 01:38:37] -rw------- 1 boinc boinc 190805999 May 28 01:36 shared/HITS.pool.root.1
[2025-05-28 01:38:37]  *** Contents of shared directory: ***
[2025-05-28 01:38:37] total 405832
[2025-05-28 01:38:37] -rw-r--r-- 2 boinc boinc     15093 May 27 23:00 start_atlas.sh
[2025-05-28 01:38:37] -rw-r--r-- 2 boinc boinc    508878 May 27 23:00 input.tar.gz
[2025-05-28 01:38:37] -rw-r--r-- 2 boinc boinc 222936079 May 27 23:00 ATLAS.root_0
[2025-05-28 01:38:37] -rw------- 1 boinc boinc 190805999 May 28 01:36 HITS.pool.root.1
[2025-05-28 01:38:37] -rw------- 1 boinc boinc   1290240 May 28 01:38 result.tar.gz
01:38:39 (536633): run_atlas exited; CPU time 56460.122371
01:38:39 (536633): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN