Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
rmation can be found at the LHC@home message board.
[2025-06-02 11:38:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 11:38:54] Checking for apptainer binary...
[2025-06-02 11:38:55] which: no apptainer in ((null))
[2025-06-02 11:38:55] apptainer is not installed, using version from CVMFS
[2025-06-02 11:38:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 11:38:55] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-02 11:38:55] apptainer works
[2025-06-02 11:38:55] Set ATHENA_PROC_NUMBER=4
[2025-06-02 11:38:55] Set ATHENA_CORE_NUMBER=4
[2025-06-02 11:38:55] Starting ATLAS job with PandaID=6667033621
[2025-06-02 11:38:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-02 11:42:06] Job failed
[2025-06-02 11:42:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-02 11:42:06] ++ pwd
[2025-06-02 11:42:06] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/
[2025-06-02 11:42:06] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/
[2025-06-02 11:42:06] + mv ATLAS.root_0 EVNT.44871834._002668.pool.root.1
[2025-06-02 11:42:06] mv: 'ATLAS.root_0' and 'EVNT.44871834._002668.pool.root.1' are the same file
[2025-06-02 11:42:06] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-02 11:42:06] + umask 077
[2025-06-02 11:42:06] ++ date +%s
[2025-06-02 11:42:06] + ACCOUNTING_STARTTIME=1748857135
[2025-06-02 11:42:06] + echo 'Detecting resource accounting method available for the job.'
[2025-06-02 11:42:06] Detecting resource accounting method available for the job.
[2025-06-02 11:42:06] + JOB_ACCOUNTING=
[2025-06-02 11:42:06] + command -v arc-job-cgroup
[2025-06-02 11:42:06] + '[' -z '' ']'
[2025-06-02 11:42:06] + GNU_TIME=/usr/bin/time
[2025-06-02 11:42:06] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-02 11:42:06] Looking for /usr/bin/time tool for accounting measurements
[2025-06-02 11:42:06] + '[' '!' -z /usr/bin/time ']'
[2025-06-02 11:42:06] + /usr/bin/time --version
[2025-06-02 11:42:06] + echo 'GNU time found and will be used for job accounting.'
[2025-06-02 11:42:06] GNU time found and will be used for job accounting.
[2025-06-02 11:42:06] + JOB_ACCOUNTING=gnutime
[2025-06-02 11:42:06] + '[' -z gnutime ']'
[2025-06-02 11:42:06] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-02 11:42:06] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-02 11:42:06] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667033621.out
[2025-06-02 11:42:06] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667033621.out
[2025-06-02 11:42:06] + export PILOT_NOKILL=YES
[2025-06-02 11:42:06] + PILOT_NOKILL=YES
[2025-06-02 11:42:06] + export GRID_GLOBAL_JOBID=DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-02 11:42:06] + GRID_GLOBAL_JOBID=DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-02 11:42:06] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-02 11:42:06] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-02 11:42:06] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-02 11:42:06] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-02 11:42:06] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-02 11:42:06] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-02 11:42:06] ++ pwd
[2025-06-02 11:42:06] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot28/slots/0
[2025-06-02 11:42:06] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-02 11:42:06] ++ pwd
[2025-06-02 11:42:06] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot28/slots/0/log.44871837._067810.job.log.1
[2025-06-02 11:42:06] ++ pwd
[2025-06-02 11:42:06] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot28/slots/0/log.44871837._067810.job.log.1
[2025-06-02 11:42:06] ++ pwd
[2025-06-02 11:42:06] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0.diag
[2025-06-02 11:42:06] + '[' '!' -z '' ']'
[2025-06-02 11:42:06] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-02 11:42:06] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-02 11:42:06] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-02 11:42:06] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-02 11:42:06] + '[' '!' -z '' ']'
[2025-06-02 11:42:06] + '[' -z yes ']'
[2025-06-02 11:42:06] ++ pwd
[2025-06-02 11:42:06] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-02 11:42:06] + runtimeenvironments=
[2025-06-02 11:42:06] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-02 11:42:06] + RTE_function_0 1
[2025-06-02 11:42:06] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-02 11:42:06] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-02 11:42:06] + export BOINC_APP=ATLAS
[2025-06-02 11:42:06] + BOINC_APP=ATLAS
[2025-06-02 11:42:06] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-02 11:42:06] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-02 11:42:06] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-02 11:42:06] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-02 11:42:06] + '[' -z 1 ']'
[2025-06-02 11:42:06] + '[' 1 == 1 ']'
[2025-06-02 11:42:06] + shift
[2025-06-02 11:42:06] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/
[2025-06-02 11:42:06] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/
[2025-06-02 11:42:06] + '[' 0 -ne 0 ']'
[2025-06-02 11:42:06] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-02 11:42:06] + '[' -f /etc/os-release ']'
[2025-06-02 11:42:06] +++ cat /etc/os-release
[2025-06-02 11:42:06] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-02 11:42:06] +++ NAME='CentOS Linux'
[2025-06-02 11:42:06] +++ VERSION='7 (Core)'
[2025-06-02 11:42:06] +++ ID=centos
[2025-06-02 11:42:06] +++ ID_LIKE='rhel fedora'
[2025-06-02 11:42:06] +++ VERSION_ID=7
[2025-06-02 11:42:06] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-02 11:42:06] +++ ANSI_COLOR='0;31'
[2025-06-02 11:42:06] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-02 11:42:06] +++ HOME_URL=https://www.centos.org/
[2025-06-02 11:42:06] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-02 11:42:06] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-02 11:42:06] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-02 11:42:06] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-02 11:42:06] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-02 11:42:06] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-02 11:42:06] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-02 11:42:06] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-02 11:42:06] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-02 11:42:06] + HOME=/scratch/boinc/var/slot28/slots/0
[2025-06-02 11:42:06] + export HOME
[2025-06-02 11:42:06] + cd /scratch/boinc/var/slot28/slots/0
[2025-06-02 11:42:06] + '[' '!' -z '' ']'
[2025-06-02 11:42:06] + '[' -z '' ']'
[2025-06-02 11:42:06] ++ /bin/hostname -f
[2025-06-02 11:42:06] + nodename=skurut02.grid.cesnet.cz
[2025-06-02 11:42:06] + echo nodename=skurut02.grid.cesnet.cz
[2025-06-02 11:42:06] + echo Processors=2
[2025-06-02 11:42:06] + echo Nodecount=1
[2025-06-02 11:42:06] + echo Benchmark=HEPSPEC:1.0
[2025-06-02 11:42:06] + executable=./runpilot2-wrapper.sh
[2025-06-02 11:42:06] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-02 11:42:06] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-02 11:42:06] ++ head -n 1
[2025-06-02 11:42:06] ++ tr -d '\0'
[2025-06-02 11:42:06] + line1='#!/bin/bash'
[2025-06-02 11:42:06] ++ echo '#!/bin/bash'
[2025-06-02 11:42:06] ++ sed -n 's/^#! *//p'
[2025-06-02 11:42:06] + shebang=/bin/bash
[2025-06-02 11:42:06] ++ echo /bin/bash
[2025-06-02 11:42:06] ++ awk '{print $1}'
[2025-06-02 11:42:06] + interpreter=/bin/bash
[2025-06-02 11:42:06] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-02 11:42:06] + '[' x/bin/bash = x ']'
[2025-06-02 11:42:06] + type /bin/bash
[2025-06-02 11:42:06] + '[' xgnutime = xgnutime ']'
[2025-06-02 11:42:06] + /usr/bin/time -o /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-02 11:42:06] + RESULT=2
[2025-06-02 11:42:06] + sed -i -e /nodename=/d /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-02 11:42:06] ++ grep domain_name init_data.xml
[2025-06-02 11:42:06] ++ awk -F '>' '{print $2}'
[2025-06-02 11:42:06] ++ sed -e 's# #_#g'
[2025-06-02 11:42:06] ++ awk -F '<' '{print $1}'
[2025-06-02 11:42:06] + hostname=skurut02.grid.cesnet.cz
[2025-06-02 11:42:06] ++ grep user_name init_data.xml
[2025-06-02 11:42:06] ++ awk -F '>' '{print $2}'
[2025-06-02 11:42:06] ++ sed -e 's# #_#g'
[2025-06-02 11:42:06] ++ awk -F '<' '{print $1}'
[2025-06-02 11:42:06] + username=praguelcg2
[2025-06-02 11:42:06] + nodename=praguelcg2@skurut02.grid.cesnet.cz
[2025-06-02 11:42:06] + echo nodename=praguelcg2@skurut02.grid.cesnet.cz
[2025-06-02 11:42:06] + '[' -n 4 ']'
[2025-06-02 11:42:06] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-02 11:42:06] + echo exitcode=2
[2025-06-02 11:42:06] + runtimeenvironments=
[2025-06-02 11:42:06] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-02 11:42:06] + RTE_function_0 2
[2025-06-02 11:42:06] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-02 11:42:06] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-02 11:42:06] + export BOINC_APP=ATLAS
[2025-06-02 11:42:06] + BOINC_APP=ATLAS
[2025-06-02 11:42:06] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-02 11:42:06] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-02 11:42:06] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-02 11:42:06] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-02 11:42:06] + '[' -z 2 ']'
[2025-06-02 11:42:06] + '[' 2 == 1 ']'
[2025-06-02 11:42:06] + '[' 0 -ne 0 ']'
[2025-06-02 11:42:06] + echo 'zip all output files'
[2025-06-02 11:42:06] + flist='*.diag '
[2025-06-02 11:42:06] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-02 11:42:06] + '[' -e ./heartbeat.json ']'
[2025-06-02 11:42:06] + flist='*.diag  ./heartbeat.json'
[2025-06-02 11:42:06] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-02 11:42:06] + '[' -e ./output.list ']'
[2025-06-02 11:42:06] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-02 11:42:06] + '[' -e ./log.44871837._067810.job.log.1 ']'
[2025-06-02 11:42:06] + flist='*.diag  ./heartbeat.json ./log.44871837._067810.job.log.1'
[2025-06-02 11:42:06] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-02 11:42:06] + '[' -e ./log.44871837._067810.job.log.1 ']'
[2025-06-02 11:42:06] + flist='*.diag  ./heartbeat.json ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1'
[2025-06-02 11:42:06] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-02 11:42:06] + '[' -e ./gmlog/ ']'
[2025-06-02 11:42:06] + '[' -f output.list ']'
[2025-06-02 11:42:06] + tar cvf result.tar.gz DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag ./heartbeat.json ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1
[2025-06-02 11:42:06] + '[' xgnutime = xcgroup ']'
[2025-06-02 11:42:06] + '[' -n '' ']'
[2025-06-02 11:42:06] + '[' -n '' ']'
[2025-06-02 11:42:06] ++ date +%s
[2025-06-02 11:42:06] + ACCOUNTING_ENDTIME=1748857323
[2025-06-02 11:42:06] ++ date -d '1970-01-01 UTC 1748857135 seconds' +%Y%m%d%H%M%SZ
[2025-06-02 11:42:06] + echo LRMSStartTime=20250602113855Z
[2025-06-02 11:42:06] ++ date -d '1970-01-01 UTC 1748857323 seconds' +%Y%m%d%H%M%SZ
[2025-06-02 11:42:06] + echo LRMSEndTime=20250602114203Z
[2025-06-02 11:42:06] + echo walltime=188
[2025-06-02 11:42:06] + echo exitcode=2
[2025-06-02 11:42:06] + exit 2
[2025-06-02 11:42:06] ./pilotlog.txt
[2025-06-02 11:42:06] ./log.44871837._067810.job.log.1
[2025-06-02 11:42:06] ./runtime_log
[2025-06-02 11:42:06] ./log.44871837._067810.job.log.tgz.1
[2025-06-02 11:42:06] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-02 11:42:06] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-02 11:42:06] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-02 11:42:06] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-02 11:42:06] ./pilot3/pilot/util/loggingsupport.py
[2025-06-02 11:42:06] ./pilot3/pilot/util/realtimelogger.py
[2025-06-02 11:42:06] ./PanDA_Pilot-6667033621/PoolFileCatalog.xml
[2025-06-02 11:42:06] ./PanDA_Pilot-6667033621/pilotlog.txt
[2025-06-02 11:42:06] ./PanDA_Pilot-6667033621/prmon.log
[2025-06-02 11:42:06] ./PanDA_Pilot-6667033621/log.EVNTtoHITS
[2025-06-02 11:42:06] ./runtime_log.err
19:42:48 (2387621): wrapper (7.7.26015): starting
19:42:48 (2387621): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 19:42:48] Arguments: --nthreads 4
[2025-06-03 19:42:48] Threads: 4
[2025-06-03 19:42:48] This job has been restarted, cleaning up previous attempt
[2025-06-03 19:42:48] Checking for CVMFS
[2025-06-03 19:42:48] No cvmfs_config command found, will try listing directly
[2025-06-03 19:42:48] CVMFS is ok
[2025-06-03 19:42:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 19:42:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 19:42:48] Further information can be found at the LHC@home message board.
[2025-06-03 19:42:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 19:42:48] Checking for apptainer binary...
[2025-06-03 19:42:48] which: no apptainer in ((null))
[2025-06-03 19:42:48] apptainer is not installed, using version from CVMFS
[2025-06-03 19:42:48] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 19:42:48] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-03 19:42:48] apptainer works
[2025-06-03 19:42:48] Set ATHENA_PROC_NUMBER=4
[2025-06-03 19:42:48] Set ATHENA_CORE_NUMBER=4
[2025-06-03 19:42:48] Starting ATLAS job with PandaID=6667033621
[2025-06-03 19:42:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 19:48:50] Job failed
[2025-06-03 19:48:50] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 19:48:50] ++ pwd
[2025-06-03 19:48:50] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/
[2025-06-03 19:48:50] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/
[2025-06-03 19:48:50] + mv ATLAS.root_0 EVNT.44871834._002668.pool.root.1
[2025-06-03 19:48:50] mv: 'ATLAS.root_0' and 'EVNT.44871834._002668.pool.root.1' are the same file
[2025-06-03 19:48:50] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 19:48:50] + umask 077
[2025-06-03 19:48:50] ++ date +%s
[2025-06-03 19:48:50] + ACCOUNTING_STARTTIME=1748972568
[2025-06-03 19:48:50] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 19:48:50] Detecting resource accounting method available for the job.
[2025-06-03 19:48:50] + JOB_ACCOUNTING=
[2025-06-03 19:48:50] + command -v arc-job-cgroup
[2025-06-03 19:48:50] + '[' -z '' ']'
[2025-06-03 19:48:50] + GNU_TIME=/usr/bin/time
[2025-06-03 19:48:50] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 19:48:50] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 19:48:50] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 19:48:50] + /usr/bin/time --version
[2025-06-03 19:48:50] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 19:48:50] GNU time found and will be used for job accounting.
[2025-06-03 19:48:50] + JOB_ACCOUNTING=gnutime
[2025-06-03 19:48:50] + '[' -z gnutime ']'
[2025-06-03 19:48:50] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 19:48:50] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 19:48:50] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667033621.out
[2025-06-03 19:48:50] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667033621.out
[2025-06-03 19:48:50] + export PILOT_NOKILL=YES
[2025-06-03 19:48:50] + PILOT_NOKILL=YES
[2025-06-03 19:48:50] + export GRID_GLOBAL_JOBID=DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-03 19:48:50] + GRID_GLOBAL_JOBID=DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-03 19:48:50] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-03 19:48:50] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-03 19:48:50] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 19:48:50] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 19:48:50] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 19:48:50] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 19:48:50] ++ pwd
[2025-06-03 19:48:50] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot28/slots/0
[2025-06-03 19:48:50] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 19:48:50] ++ pwd
[2025-06-03 19:48:50] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot28/slots/0/log.44871837._067810.job.log.1
[2025-06-03 19:48:50] ++ pwd
[2025-06-03 19:48:50] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot28/slots/0/log.44871837._067810.job.log.1
[2025-06-03 19:48:50] ++ pwd
[2025-06-03 19:48:50] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0.diag
[2025-06-03 19:48:50] + '[' '!' -z '' ']'
[2025-06-03 19:48:50] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 19:48:50] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 19:48:50] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 19:48:50] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 19:48:50] + '[' '!' -z '' ']'
[2025-06-03 19:48:50] + '[' -z yes ']'
[2025-06-03 19:48:50] ++ pwd
[2025-06-03 19:48:50] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-03 19:48:50] + runtimeenvironments=
[2025-06-03 19:48:50] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 19:48:50] + RTE_function_0 1
[2025-06-03 19:48:50] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 19:48:50] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 19:48:50] + export BOINC_APP=ATLAS
[2025-06-03 19:48:50] + BOINC_APP=ATLAS
[2025-06-03 19:48:50] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 19:48:50] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 19:48:50] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 19:48:50] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 19:48:50] + '[' -z 1 ']'
[2025-06-03 19:48:50] + '[' 1 == 1 ']'
[2025-06-03 19:48:50] + shift
[2025-06-03 19:48:50] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/
[2025-06-03 19:48:50] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/
[2025-06-03 19:48:50] + '[' 0 -ne 0 ']'
[2025-06-03 19:48:50] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 19:48:50] + '[' -f /etc/os-release ']'
[2025-06-03 19:48:50] +++ cat /etc/os-release
[2025-06-03 19:48:50] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 19:48:50] +++ NAME='CentOS Linux'
[2025-06-03 19:48:50] +++ VERSION='7 (Core)'
[2025-06-03 19:48:50] +++ ID=centos
[2025-06-03 19:48:50] +++ ID_LIKE='rhel fedora'
[2025-06-03 19:48:50] +++ VERSION_ID=7
[2025-06-03 19:48:50] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 19:48:50] +++ ANSI_COLOR='0;31'
[2025-06-03 19:48:50] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 19:48:50] +++ HOME_URL=https://www.centos.org/
[2025-06-03 19:48:50] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 19:48:50] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 19:48:50] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 19:48:50] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 19:48:50] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 19:48:50] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 19:48:50] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 19:48:50] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 19:48:50] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 19:48:50] + HOME=/scratch/boinc/var/slot28/slots/0
[2025-06-03 19:48:50] + export HOME
[2025-06-03 19:48:50] + cd /scratch/boinc/var/slot28/slots/0
[2025-06-03 19:48:50] + '[' '!' -z '' ']'
[2025-06-03 19:48:50] + '[' -z '' ']'
[2025-06-03 19:48:50] ++ /bin/hostname -f
[2025-06-03 19:48:50] + nodename=skurut02.grid.cesnet.cz
[2025-06-03 19:48:50] + echo nodename=skurut02.grid.cesnet.cz
[2025-06-03 19:48:50] + echo Processors=2
[2025-06-03 19:48:50] + echo Nodecount=1
[2025-06-03 19:48:50] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 19:48:50] + executable=./runpilot2-wrapper.sh
[2025-06-03 19:48:50] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 19:48:50] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 19:48:50] ++ head -n 1
[2025-06-03 19:48:50] ++ tr -d '\0'
[2025-06-03 19:48:50] + line1='#!/bin/bash'
[2025-06-03 19:48:50] ++ echo '#!/bin/bash'
[2025-06-03 19:48:50] ++ sed -n 's/^#! *//p'
[2025-06-03 19:48:50] + shebang=/bin/bash
[2025-06-03 19:48:50] ++ echo /bin/bash
[2025-06-03 19:48:50] ++ awk '{print $1}'
[2025-06-03 19:48:50] + interpreter=/bin/bash
[2025-06-03 19:48:50] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 19:48:50] + '[' x/bin/bash = x ']'
[2025-06-03 19:48:50] + type /bin/bash
[2025-06-03 19:48:50] + '[' xgnutime = xgnutime ']'
[2025-06-03 19:48:50] + /usr/bin/time -o /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 19:48:50] + RESULT=2
[2025-06-03 19:48:50] + sed -i -e /nodename=/d /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-03 19:48:50] ++ grep domain_name init_data.xml
[2025-06-03 19:48:50] ++ sed -e 's# #_#g'
[2025-06-03 19:48:50] ++ awk -F '<' '{print $1}'
[2025-06-03 19:48:50] ++ awk -F '>' '{print $2}'
[2025-06-03 19:48:50] + hostname=skurut02.grid.cesnet.cz
[2025-06-03 19:48:50] ++ awk -F '<' '{print $1}'
[2025-06-03 19:48:50] ++ sed -e 's# #_#g'
[2025-06-03 19:48:50] ++ awk -F '>' '{print $2}'
[2025-06-03 19:48:50] ++ grep user_name init_data.xml
[2025-06-03 19:48:50] + username=praguelcg2
[2025-06-03 19:48:50] + nodename=praguelcg2@skurut02.grid.cesnet.cz
[2025-06-03 19:48:50] + echo nodename=praguelcg2@skurut02.grid.cesnet.cz
[2025-06-03 19:48:50] + '[' -n 4 ']'
[2025-06-03 19:48:50] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-03 19:48:50] + echo exitcode=2
[2025-06-03 19:48:50] + runtimeenvironments=
[2025-06-03 19:48:50] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 19:48:50] + RTE_function_0 2
[2025-06-03 19:48:50] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 19:48:50] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 19:48:50] + export BOINC_APP=ATLAS
[2025-06-03 19:48:50] + BOINC_APP=ATLAS
[2025-06-03 19:48:50] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 19:48:50] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 19:48:50] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 19:48:50] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 19:48:50] + '[' -z 2 ']'
[2025-06-03 19:48:50] + '[' 2 == 1 ']'
[2025-06-03 19:48:50] + '[' 0 -ne 0 ']'
[2025-06-03 19:48:50] + echo 'zip all output files'
[2025-06-03 19:48:50] + flist='*.diag '
[2025-06-03 19:48:50] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-03 19:48:50] + '[' -e ./heartbeat.json ']'
[2025-06-03 19:48:50] + flist='*.diag  ./heartbeat.json'
[2025-06-03 19:48:50] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-03 19:48:50] + '[' -e ./output.list ']'
[2025-06-03 19:48:50] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-03 19:48:50] + '[' -e ./log.44871837._067810.job.log.1 ']'
[2025-06-03 19:48:50] + flist='*.diag  ./heartbeat.json ./log.44871837._067810.job.log.1'
[2025-06-03 19:48:50] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-03 19:48:50] + '[' -e ./log.44871837._067810.job.log.1 ']'
[2025-06-03 19:48:50] + flist='*.diag  ./heartbeat.json ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1'
[2025-06-03 19:48:50] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-03 19:48:50] + '[' -e ./gmlog/ ']'
[2025-06-03 19:48:50] + '[' -f output.list ']'
[2025-06-03 19:48:50] + tar cvf result.tar.gz DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag ./heartbeat.json ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1
[2025-06-03 19:48:50] + '[' xgnutime = xcgroup ']'
[2025-06-03 19:48:50] + '[' -n '' ']'
[2025-06-03 19:48:50] + '[' -n '' ']'
[2025-06-03 19:48:50] ++ date +%s
[2025-06-03 19:48:50] + ACCOUNTING_ENDTIME=1748972757
[2025-06-03 19:48:50] ++ date -d '1970-01-01 UTC 1748972568 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 19:48:50] + echo LRMSStartTime=20250603194248Z
[2025-06-03 19:48:50] ++ date -d '1970-01-01 UTC 1748972757 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 19:48:50] + echo LRMSEndTime=20250603194557Z
[2025-06-03 19:48:50] + echo walltime=189
[2025-06-03 19:48:50] + echo exitcode=2
[2025-06-03 19:48:50] + exit 2
[2025-06-03 19:48:50] ./pilotlog.txt
[2025-06-03 19:48:50] ./log.44871837._067810.job.log.1
[2025-06-03 19:48:50] ./runtime_log
[2025-06-03 19:48:50] ./log.44871837._067810.job.log.tgz.1
[2025-06-03 19:48:50] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 19:48:50] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 19:48:50] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 19:48:50] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 19:48:50] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 19:48:50] ./pilot3/pilot/util/realtimelogger.py
[2025-06-03 19:48:50] ./PanDA_Pilot-6667033621/PoolFileCatalog.xml
[2025-06-03 19:48:50] ./PanDA_Pilot-6667033621/pilotlog.txt
[2025-06-03 19:48:50] ./PanDA_Pilot-6667033621/prmon.log
[2025-06-03 19:48:50] ./PanDA_Pilot-6667033621/log.EVNTtoHITS
[2025-06-03 19:48:50] ./runtime_log.err
20:01:08 (2456467): wrapper (7.7.26015): starting
20:01:08 (2456467): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 20:01:08] Arguments: --nthreads 4
[2025-06-03 20:01:08] Threads: 4
[2025-06-03 20:01:08] This job has been restarted, cleaning up previous attempt
[2025-06-03 20:01:08] Checking for CVMFS
[2025-06-03 20:01:08] No cvmfs_config command found, will try listing directly
[2025-06-03 20:01:08] CVMFS is ok
[2025-06-03 20:01:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 20:01:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 20:01:08] Further information can be found at the LHC@home message board.
[2025-06-03 20:01:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 20:01:08] Checking for apptainer binary...
[2025-06-03 20:01:08] which: no apptainer in ((null))
[2025-06-03 20:01:08] apptainer is not installed, using version from CVMFS
[2025-06-03 20:01:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 20:01:08] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-03 20:01:08] apptainer works
[2025-06-03 20:01:08] Set ATHENA_PROC_NUMBER=4
[2025-06-03 20:01:08] Set ATHENA_CORE_NUMBER=4
[2025-06-03 20:01:08] Starting ATLAS job with PandaID=6667033621
[2025-06-03 20:01:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:55:21 (4114957): wrapper (7.7.26015): starting
11:55:21 (4114957): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 11:55:21] Arguments: --nthreads 4
[2025-06-04 11:55:21] Threads: 4
[2025-06-04 11:55:21] This job has been restarted, cleaning up previous attempt
[2025-06-04 11:55:21] Checking for CVMFS
[2025-06-04 11:55:21] No cvmfs_config command found, will try listing directly
[2025-06-04 11:55:21] CVMFS is ok
[2025-06-04 11:55:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 11:55:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 11:55:21] Further information can be found at the LHC@home message board.
[2025-06-04 11:55:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 11:55:21] Checking for apptainer binary...
[2025-06-04 11:55:21] which: no apptainer in ((null))
[2025-06-04 11:55:21] apptainer is not installed, using version from CVMFS
[2025-06-04 11:55:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 11:55:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-04 11:55:21] apptainer works
[2025-06-04 11:55:21] Set ATHENA_PROC_NUMBER=4
[2025-06-04 11:55:21] Set ATHENA_CORE_NUMBER=4
[2025-06-04 11:55:21] Starting ATLAS job with PandaID=6667033621
[2025-06-04 11:55:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:11:26 (1153795): wrapper (7.7.26015): starting
00:11:26 (1153795): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 00:11:26] Arguments: --nthreads 4
[2025-06-05 00:11:26] Threads: 4
[2025-06-05 00:11:26] This job has been restarted, cleaning up previous attempt
[2025-06-05 00:11:26] Checking for CVMFS
[2025-06-05 00:11:26] No cvmfs_config command found, will try listing directly
[2025-06-05 00:11:26] CVMFS is ok
[2025-06-05 00:11:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 00:11:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 00:11:26] Further information can be found at the LHC@home message board.
[2025-06-05 00:11:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 00:11:26] Checking for apptainer binary...
[2025-06-05 00:11:26] which: no apptainer in ((null))
[2025-06-05 00:11:26] apptainer is not installed, using version from CVMFS
[2025-06-05 00:11:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 00:11:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-05 00:11:27] apptainer works
[2025-06-05 00:11:27] Set ATHENA_PROC_NUMBER=4
[2025-06-05 00:11:27] Set ATHENA_CORE_NUMBER=4
[2025-06-05 00:11:27] Starting ATLAS job with PandaID=6667033621
[2025-06-05 00:11:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 00:14:58] Job failed
[2025-06-05 00:14:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-05 00:14:58] ++ pwd
[2025-06-05 00:14:58] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/
[2025-06-05 00:14:58] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/
[2025-06-05 00:14:58] + mv ATLAS.root_0 EVNT.44871834._002668.pool.root.1
[2025-06-05 00:14:58] mv: 'ATLAS.root_0' and 'EVNT.44871834._002668.pool.root.1' are the same file
[2025-06-05 00:14:58] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-05 00:14:58] + umask 077
[2025-06-05 00:14:58] ++ date +%s
[2025-06-05 00:14:58] + ACCOUNTING_STARTTIME=1749075087
[2025-06-05 00:14:58] + echo 'Detecting resource accounting method available for the job.'
[2025-06-05 00:14:58] Detecting resource accounting method available for the job.
[2025-06-05 00:14:58] + JOB_ACCOUNTING=
[2025-06-05 00:14:58] + command -v arc-job-cgroup
[2025-06-05 00:14:58] + '[' -z '' ']'
[2025-06-05 00:14:58] + GNU_TIME=/usr/bin/time
[2025-06-05 00:14:58] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-05 00:14:58] Looking for /usr/bin/time tool for accounting measurements
[2025-06-05 00:14:58] + '[' '!' -z /usr/bin/time ']'
[2025-06-05 00:14:58] + /usr/bin/time --version
[2025-06-05 00:14:58] + echo 'GNU time found and will be used for job accounting.'
[2025-06-05 00:14:58] GNU time found and will be used for job accounting.
[2025-06-05 00:14:58] + JOB_ACCOUNTING=gnutime
[2025-06-05 00:14:58] + '[' -z gnutime ']'
[2025-06-05 00:14:58] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-05 00:14:58] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-05 00:14:58] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667033621.out
[2025-06-05 00:14:58] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667033621.out
[2025-06-05 00:14:58] + export PILOT_NOKILL=YES
[2025-06-05 00:14:58] + PILOT_NOKILL=YES
[2025-06-05 00:14:58] + export GRID_GLOBAL_JOBID=DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-05 00:14:58] + GRID_GLOBAL_JOBID=DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-05 00:14:58] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-05 00:14:58] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-05 00:14:58] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-05 00:14:58] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-05 00:14:58] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-05 00:14:58] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-05 00:14:58] ++ pwd
[2025-06-05 00:14:58] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot28/slots/0
[2025-06-05 00:14:58] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-05 00:14:58] ++ pwd
[2025-06-05 00:14:58] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot28/slots/0/log.44871837._067810.job.log.1
[2025-06-05 00:14:58] ++ pwd
[2025-06-05 00:14:58] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot28/slots/0/log.44871837._067810.job.log.1
[2025-06-05 00:14:58] ++ pwd
[2025-06-05 00:14:58] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0.diag
[2025-06-05 00:14:58] + '[' '!' -z '' ']'
[2025-06-05 00:14:58] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-05 00:14:58] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-05 00:14:58] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-05 00:14:58] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-05 00:14:58] + '[' '!' -z '' ']'
[2025-06-05 00:14:58] + '[' -z yes ']'
[2025-06-05 00:14:58] ++ pwd
[2025-06-05 00:14:58] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-05 00:14:58] + runtimeenvironments=
[2025-06-05 00:14:58] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-05 00:14:58] + RTE_function_0 1
[2025-06-05 00:14:58] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 00:14:58] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 00:14:58] + export BOINC_APP=ATLAS
[2025-06-05 00:14:58] + BOINC_APP=ATLAS
[2025-06-05 00:14:58] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 00:14:58] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 00:14:58] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 00:14:58] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 00:14:58] + '[' -z 1 ']'
[2025-06-05 00:14:58] + '[' 1 == 1 ']'
[2025-06-05 00:14:58] + shift
[2025-06-05 00:14:58] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/
[2025-06-05 00:14:58] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/
[2025-06-05 00:14:58] + '[' 0 -ne 0 ']'
[2025-06-05 00:14:58] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-05 00:14:58] + '[' -f /etc/os-release ']'
[2025-06-05 00:14:58] +++ cat /etc/os-release
[2025-06-05 00:14:58] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-05 00:14:58] +++ NAME='CentOS Linux'
[2025-06-05 00:14:58] +++ VERSION='7 (Core)'
[2025-06-05 00:14:58] +++ ID=centos
[2025-06-05 00:14:58] +++ ID_LIKE='rhel fedora'
[2025-06-05 00:14:58] +++ VERSION_ID=7
[2025-06-05 00:14:58] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-05 00:14:58] +++ ANSI_COLOR='0;31'
[2025-06-05 00:14:58] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-05 00:14:58] +++ HOME_URL=https://www.centos.org/
[2025-06-05 00:14:58] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-05 00:14:58] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-05 00:14:58] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-05 00:14:58] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-05 00:14:58] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-05 00:14:58] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-05 00:14:58] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-05 00:14:58] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-05 00:14:58] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-05 00:14:58] + HOME=/scratch/boinc/var/slot28/slots/0
[2025-06-05 00:14:58] + export HOME
[2025-06-05 00:14:58] + cd /scratch/boinc/var/slot28/slots/0
[2025-06-05 00:14:58] + '[' '!' -z '' ']'
[2025-06-05 00:14:58] + '[' -z '' ']'
[2025-06-05 00:14:58] ++ /bin/hostname -f
[2025-06-05 00:14:58] + nodename=skurut02.grid.cesnet.cz
[2025-06-05 00:14:58] + echo nodename=skurut02.grid.cesnet.cz
[2025-06-05 00:14:58] + echo Processors=2
[2025-06-05 00:14:58] + echo Nodecount=1
[2025-06-05 00:14:58] + echo Benchmark=HEPSPEC:1.0
[2025-06-05 00:14:58] + executable=./runpilot2-wrapper.sh
[2025-06-05 00:14:58] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-05 00:14:58] ++ head -n 1
[2025-06-05 00:14:58] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-05 00:14:58] ++ tr -d '\0'
[2025-06-05 00:14:58] + line1='#!/bin/bash'
[2025-06-05 00:14:58] ++ echo '#!/bin/bash'
[2025-06-05 00:14:58] ++ sed -n 's/^#! *//p'
[2025-06-05 00:14:58] + shebang=/bin/bash
[2025-06-05 00:14:58] ++ echo /bin/bash
[2025-06-05 00:14:58] ++ awk '{print $1}'
[2025-06-05 00:14:58] + interpreter=/bin/bash
[2025-06-05 00:14:58] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-05 00:14:58] + '[' x/bin/bash = x ']'
[2025-06-05 00:14:58] + type /bin/bash
[2025-06-05 00:14:58] + '[' xgnutime = xgnutime ']'
[2025-06-05 00:14:58] + /usr/bin/time -o /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-05 00:14:58] + RESULT=2
[2025-06-05 00:14:58] + sed -i -e /nodename=/d /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-05 00:14:58] ++ grep domain_name init_data.xml
[2025-06-05 00:14:58] ++ sed -e 's# #_#g'
[2025-06-05 00:14:58] ++ awk -F '<' '{print $1}'
[2025-06-05 00:14:58] ++ awk -F '>' '{print $2}'
[2025-06-05 00:14:58] + hostname=skurut02.grid.cesnet.cz
[2025-06-05 00:14:58] ++ grep user_name init_data.xml
[2025-06-05 00:14:58] ++ awk -F '>' '{print $2}'
[2025-06-05 00:14:58] ++ awk -F '<' '{print $1}'
[2025-06-05 00:14:58] ++ sed -e 's# #_#g'
[2025-06-05 00:14:58] + username=praguelcg2
[2025-06-05 00:14:58] + nodename=praguelcg2@skurut02.grid.cesnet.cz
[2025-06-05 00:14:58] + echo nodename=praguelcg2@skurut02.grid.cesnet.cz
[2025-06-05 00:14:58] + '[' -n 4 ']'
[2025-06-05 00:14:58] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-05 00:14:58] + echo exitcode=2
[2025-06-05 00:14:58] + runtimeenvironments=
[2025-06-05 00:14:58] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-05 00:14:58] + RTE_function_0 2
[2025-06-05 00:14:58] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 00:14:58] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 00:14:58] + export BOINC_APP=ATLAS
[2025-06-05 00:14:58] + BOINC_APP=ATLAS
[2025-06-05 00:14:58] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 00:14:58] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 00:14:58] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 00:14:58] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 00:14:58] + '[' -z 2 ']'
[2025-06-05 00:14:58] + '[' 2 == 1 ']'
[2025-06-05 00:14:58] + '[' 0 -ne 0 ']'
[2025-06-05 00:14:58] + echo 'zip all output files'
[2025-06-05 00:14:58] + flist='*.diag '
[2025-06-05 00:14:58] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 00:14:58] + '[' -e ./heartbeat.json ']'
[2025-06-05 00:14:58] + flist='*.diag  ./heartbeat.json'
[2025-06-05 00:14:58] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 00:14:58] + '[' -e ./output.list ']'
[2025-06-05 00:14:58] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 00:14:58] + '[' -e ./log.44871837._067810.job.log.1 ']'
[2025-06-05 00:14:58] + flist='*.diag  ./heartbeat.json ./log.44871837._067810.job.log.1'
[2025-06-05 00:14:58] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 00:14:58] + '[' -e ./log.44871837._067810.job.log.1 ']'
[2025-06-05 00:14:58] + flist='*.diag  ./heartbeat.json ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1'
[2025-06-05 00:14:58] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 00:14:58] + '[' -e ./gmlog/ ']'
[2025-06-05 00:14:58] + '[' -f output.list ']'
[2025-06-05 00:14:58] + tar cvf result.tar.gz DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag ./heartbeat.json ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1
[2025-06-05 00:14:58] + '[' xgnutime = xcgroup ']'
[2025-06-05 00:14:58] + '[' -n '' ']'
[2025-06-05 00:14:58] + '[' -n '' ']'
[2025-06-05 00:14:58] ++ date +%s
[2025-06-05 00:14:58] + ACCOUNTING_ENDTIME=1749075274
[2025-06-05 00:14:58] ++ date -d '1970-01-01 UTC 1749075087 seconds' +%Y%m%d%H%M%SZ
[2025-06-05 00:14:58] + echo LRMSStartTime=20250605001127Z
[2025-06-05 00:14:58] ++ date -d '1970-01-01 UTC 1749075274 seconds' +%Y%m%d%H%M%SZ
[2025-06-05 00:14:58] + echo LRMSEndTime=20250605001434Z
[2025-06-05 00:14:58] + echo walltime=187
[2025-06-05 00:14:58] + echo exitcode=2
[2025-06-05 00:14:58] + exit 2
[2025-06-05 00:14:58] ./pilotlog.txt
[2025-06-05 00:14:58] ./log.44871837._067810.job.log.1
[2025-06-05 00:14:58] ./runtime_log
[2025-06-05 00:14:58] ./log.44871837._067810.job.log.tgz.1
[2025-06-05 00:14:58] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-05 00:14:58] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-05 00:14:58] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-05 00:14:58] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-05 00:14:58] ./pilot3/pilot/util/loggingsupport.py
[2025-06-05 00:14:58] ./pilot3/pilot/util/realtimelogger.py
[2025-06-05 00:14:58] ./PanDA_Pilot-6667033621/PoolFileCatalog.xml
[2025-06-05 00:14:58] ./PanDA_Pilot-6667033621/pilotlog.txt
[2025-06-05 00:14:58] ./PanDA_Pilot-6667033621/prmon.log
[2025-06-05 00:14:58] ./PanDA_Pilot-6667033621/log.EVNTtoHITS
[2025-06-05 00:14:58] ./runtime_log.err
22:23:01 (3569705): wrapper (7.7.26015): starting
22:23:01 (3569705): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 22:23:01] Arguments: --nthreads 4
[2025-06-05 22:23:01] Threads: 4
[2025-06-05 22:23:01] This job has been restarted, cleaning up previous attempt
[2025-06-05 22:23:01] Checking for CVMFS
[2025-06-05 22:23:01] No cvmfs_config command found, will try listing directly
[2025-06-05 22:23:01] CVMFS is ok
[2025-06-05 22:23:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 22:23:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 22:23:01] Further information can be found at the LHC@home message board.
[2025-06-05 22:23:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 22:23:01] Checking for apptainer binary...
[2025-06-05 22:23:01] which: no apptainer in ((null))
[2025-06-05 22:23:01] apptainer is not installed, using version from CVMFS
[2025-06-05 22:23:01] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 22:23:01] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2025-06-05 22:23:01] apptainer works
[2025-06-05 22:23:02] Set ATHENA_PROC_NUMBER=4
[2025-06-05 22:23:02] Set ATHENA_CORE_NUMBER=4
[2025-06-05 22:23:02] Starting ATLAS job with PandaID=6667033621
[2025-06-05 22:23:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 22:31:43] Job failed
[2025-06-05 22:31:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-05 22:31:43] ++ pwd
[2025-06-05 22:31:43] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/
[2025-06-05 22:31:43] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/
[2025-06-05 22:31:43] + mv ATLAS.root_0 EVNT.44871834._002668.pool.root.1
[2025-06-05 22:31:43] mv: 'ATLAS.root_0' and 'EVNT.44871834._002668.pool.root.1' are the same file
[2025-06-05 22:31:43] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-05 22:31:43] + umask 077
[2025-06-05 22:31:43] ++ date +%s
[2025-06-05 22:31:43] + ACCOUNTING_STARTTIME=1749154982
[2025-06-05 22:31:43] + echo 'Detecting resource accounting method available for the job.'
[2025-06-05 22:31:43] Detecting resource accounting method available for the job.
[2025-06-05 22:31:43] + JOB_ACCOUNTING=
[2025-06-05 22:31:43] + command -v arc-job-cgroup
[2025-06-05 22:31:43] + '[' -z '' ']'
[2025-06-05 22:31:43] + GNU_TIME=/usr/bin/time
[2025-06-05 22:31:43] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-05 22:31:43] Looking for /usr/bin/time tool for accounting measurements
[2025-06-05 22:31:43] + '[' '!' -z /usr/bin/time ']'
[2025-06-05 22:31:43] + /usr/bin/time --version
[2025-06-05 22:31:43] + echo 'GNU time found and will be used for job accounting.'
[2025-06-05 22:31:43] GNU time found and will be used for job accounting.
[2025-06-05 22:31:43] + JOB_ACCOUNTING=gnutime
[2025-06-05 22:31:43] + '[' -z gnutime ']'
[2025-06-05 22:31:43] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-05 22:31:43] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-05 22:31:43] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667033621.out
[2025-06-05 22:31:43] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6667033621.out
[2025-06-05 22:31:43] + export PILOT_NOKILL=YES
[2025-06-05 22:31:43] + PILOT_NOKILL=YES
[2025-06-05 22:31:43] + export GRID_GLOBAL_JOBID=DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-05 22:31:43] + GRID_GLOBAL_JOBID=DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-05 22:31:43] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-05 22:31:43] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m
[2025-06-05 22:31:43] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-05 22:31:43] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-05 22:31:43] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-05 22:31:43] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-05 22:31:43] ++ pwd
[2025-06-05 22:31:43] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot28/slots/0
[2025-06-05 22:31:43] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-05 22:31:43] ++ pwd
[2025-06-05 22:31:43] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot28/slots/0/log.44871837._067810.job.log.1
[2025-06-05 22:31:43] ++ pwd
[2025-06-05 22:31:43] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot28/slots/0/log.44871837._067810.job.log.1
[2025-06-05 22:31:43] ++ pwd
[2025-06-05 22:31:43] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0.diag
[2025-06-05 22:31:43] + '[' '!' -z '' ']'
[2025-06-05 22:31:43] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-05 22:31:43] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-05 22:31:43] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-05 22:31:43] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-05 22:31:43] + '[' '!' -z '' ']'
[2025-06-05 22:31:43] + '[' -z yes ']'
[2025-06-05 22:31:43] ++ pwd
[2025-06-05 22:31:43] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-05 22:31:43] + runtimeenvironments=
[2025-06-05 22:31:43] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-05 22:31:43] + RTE_function_0 1
[2025-06-05 22:31:43] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 22:31:43] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 22:31:43] + export BOINC_APP=ATLAS
[2025-06-05 22:31:43] + BOINC_APP=ATLAS
[2025-06-05 22:31:43] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 22:31:43] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 22:31:43] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 22:31:43] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 22:31:43] + '[' -z 1 ']'
[2025-06-05 22:31:43] + '[' 1 == 1 ']'
[2025-06-05 22:31:43] + shift
[2025-06-05 22:31:43] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/
[2025-06-05 22:31:43] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/
[2025-06-05 22:31:43] + '[' 0 -ne 0 ']'
[2025-06-05 22:31:43] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-05 22:31:43] + '[' -f /etc/os-release ']'
[2025-06-05 22:31:43] +++ cat /etc/os-release
[2025-06-05 22:31:43] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-05 22:31:43] +++ NAME='CentOS Linux'
[2025-06-05 22:31:43] +++ VERSION='7 (Core)'
[2025-06-05 22:31:43] +++ ID=centos
[2025-06-05 22:31:43] +++ ID_LIKE='rhel fedora'
[2025-06-05 22:31:43] +++ VERSION_ID=7
[2025-06-05 22:31:43] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-05 22:31:43] +++ ANSI_COLOR='0;31'
[2025-06-05 22:31:43] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-05 22:31:43] +++ HOME_URL=https://www.centos.org/
[2025-06-05 22:31:43] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-05 22:31:43] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-05 22:31:43] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-05 22:31:43] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-05 22:31:43] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-05 22:31:43] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-05 22:31:43] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-05 22:31:43] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-05 22:31:43] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-05 22:31:43] + HOME=/scratch/boinc/var/slot28/slots/0
[2025-06-05 22:31:43] + export HOME
[2025-06-05 22:31:43] + cd /scratch/boinc/var/slot28/slots/0
[2025-06-05 22:31:43] + '[' '!' -z '' ']'
[2025-06-05 22:31:43] + '[' -z '' ']'
[2025-06-05 22:31:43] ++ /bin/hostname -f
[2025-06-05 22:31:43] + nodename=skurut02.grid.cesnet.cz
[2025-06-05 22:31:43] + echo nodename=skurut02.grid.cesnet.cz
[2025-06-05 22:31:43] + echo Processors=2
[2025-06-05 22:31:43] + echo Nodecount=1
[2025-06-05 22:31:43] + echo Benchmark=HEPSPEC:1.0
[2025-06-05 22:31:43] + executable=./runpilot2-wrapper.sh
[2025-06-05 22:31:43] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-05 22:31:43] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-05 22:31:43] ++ head -n 1
[2025-06-05 22:31:43] ++ tr -d '\0'
[2025-06-05 22:31:43] + line1='#!/bin/bash'
[2025-06-05 22:31:43] ++ echo '#!/bin/bash'
[2025-06-05 22:31:43] ++ sed -n 's/^#! *//p'
[2025-06-05 22:31:43] + shebang=/bin/bash
[2025-06-05 22:31:43] ++ echo /bin/bash
[2025-06-05 22:31:43] ++ awk '{print $1}'
[2025-06-05 22:31:43] + interpreter=/bin/bash
[2025-06-05 22:31:43] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-05 22:31:43] + '[' x/bin/bash = x ']'
[2025-06-05 22:31:43] + type /bin/bash
[2025-06-05 22:31:43] + '[' xgnutime = xgnutime ']'
[2025-06-05 22:31:43] + /usr/bin/time -o /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-05 22:31:43] + RESULT=2
[2025-06-05 22:31:43] + sed -i -e /nodename=/d /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-05 22:31:43] ++ grep domain_name init_data.xml
[2025-06-05 22:31:43] ++ awk -F '>' '{print $2}'
[2025-06-05 22:31:43] ++ awk -F '<' '{print $1}'
[2025-06-05 22:31:43] ++ sed -e 's# #_#g'
[2025-06-05 22:31:43] + hostname=skurut02.grid.cesnet.cz
[2025-06-05 22:31:43] ++ grep user_name init_data.xml
[2025-06-05 22:31:43] ++ awk -F '>' '{print $2}'
[2025-06-05 22:31:43] ++ awk -F '<' '{print $1}'
[2025-06-05 22:31:43] ++ sed -e 's# #_#g'
[2025-06-05 22:31:43] + username=praguelcg2
[2025-06-05 22:31:43] + nodename=praguelcg2@skurut02.grid.cesnet.cz
[2025-06-05 22:31:43] + echo nodename=praguelcg2@skurut02.grid.cesnet.cz
[2025-06-05 22:31:43] + '[' -n 4 ']'
[2025-06-05 22:31:43] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot28/slots/0/DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag
[2025-06-05 22:31:43] + echo exitcode=2
[2025-06-05 22:31:43] + runtimeenvironments=
[2025-06-05 22:31:43] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-05 22:31:43] + RTE_function_0 2
[2025-06-05 22:31:43] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 22:31:43] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 22:31:43] + export BOINC_APP=ATLAS
[2025-06-05 22:31:43] + BOINC_APP=ATLAS
[2025-06-05 22:31:43] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 22:31:43] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 22:31:43] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 22:31:43] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 22:31:43] + '[' -z 2 ']'
[2025-06-05 22:31:43] + '[' 2 == 1 ']'
[2025-06-05 22:31:43] + '[' 0 -ne 0 ']'
[2025-06-05 22:31:43] + echo 'zip all output files'
[2025-06-05 22:31:43] + flist='*.diag '
[2025-06-05 22:31:43] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 22:31:43] + '[' -e ./heartbeat.json ']'
[2025-06-05 22:31:43] + flist='*.diag  ./heartbeat.json'
[2025-06-05 22:31:43] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 22:31:43] + '[' -e ./output.list ']'
[2025-06-05 22:31:43] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 22:31:43] + '[' -e ./log.44871837._067810.job.log.1 ']'
[2025-06-05 22:31:43] + flist='*.diag  ./heartbeat.json ./log.44871837._067810.job.log.1'
[2025-06-05 22:31:43] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 22:31:43] + '[' -e ./log.44871837._067810.job.log.1 ']'
[2025-06-05 22:31:43] + flist='*.diag  ./heartbeat.json ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1'
[2025-06-05 22:31:43] + for f in ./heartbeat.json ./output.list ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1 ./gmlog/
[2025-06-05 22:31:43] + '[' -e ./gmlog/ ']'
[2025-06-05 22:31:43] + '[' -f output.list ']'
[2025-06-05 22:31:43] + tar cvf result.tar.gz DG1KDm3G9d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0UZKDmq1pj1m.diag ./heartbeat.json ./log.44871837._067810.job.log.1 ./log.44871837._067810.job.log.1
[2025-06-05 22:31:43] + '[' xgnutime = xcgroup ']'
[2025-06-05 22:31:43] + '[' -n '' ']'
[2025-06-05 22:31:43] + '[' -n '' ']'
[2025-06-05 22:31:43] ++ date +%s
[2025-06-05 22:31:43] + ACCOUNTING_ENDTIME=1749155169
[2025-06-05 22:31:43] ++ date -d '1970-01-01 UTC 1749154982 seconds' +%Y%m%d%H%M%SZ
[2025-06-05 22:31:43] + echo LRMSStartTime=20250605222302Z
[2025-06-05 22:31:43] ++ date -d '1970-01-01 UTC 1749155169 seconds' +%Y%m%d%H%M%SZ
[2025-06-05 22:31:43] + echo LRMSEndTime=20250605222609Z
[2025-06-05 22:31:43] + echo walltime=187
[2025-06-05 22:31:43] + echo exitcode=2
[2025-06-05 22:31:43] + exit 2
[2025-06-05 22:31:44] ./pilotlog.txt
[2025-06-05 22:31:44] ./log.44871837._067810.job.log.1
[2025-06-05 22:31:44] ./runtime_log
[2025-06-05 22:31:44] ./log.44871837._067810.job.log.tgz.1
[2025-06-05 22:31:44] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-05 22:31:44] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-05 22:31:44] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-05 22:31:44] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-05 22:31:44] ./pilot3/pilot/util/loggingsupport.py
[2025-06-05 22:31:44] ./pilot3/pilot/util/realtimelogger.py
[2025-06-05 22:31:44] ./PanDA_Pilot-6667033621/PoolFileCatalog.xml
[2025-06-05 22:31:44] ./PanDA_Pilot-6667033621/pilotlog.txt
[2025-06-05 22:31:44] ./PanDA_Pilot-6667033621/prmon.lo

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