Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
17:53:37 (1467154): wrapper (7.7.26015): starting
17:53:37 (1467154): wrapper: running run_atlas (--nthreads 4)
[2025-05-28 17:53:37] Arguments: --nthreads 4
[2025-05-28 17:53:37] Threads: 4
[2025-05-28 17:53:37] Checking for CVMFS
[2025-05-28 17:53:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 17:53:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 17:53:38] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 17:53:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 17:53:38] 2.12.7.0 14849 12573 46316 146522 2 56 27565993 33554433 0 130560 0 4681637 99.988 1532379 1668 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2025-05-28 17:53:38] CVMFS is ok
[2025-05-28 17:53:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 17:53:38] Checking for apptainer binary...
[2025-05-28 17:53:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 17:53:38] Running /usr/bin/apptainer --version
[2025-05-28 17:53:38] apptainer version 1.4.0
[2025-05-28 17:53:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 17:53:38] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2025-05-28 17:53:38] apptainer works
[2025-05-28 17:53:38] Set ATHENA_PROC_NUMBER=4
[2025-05-28 17:53:38] Set ATHENA_CORE_NUMBER=4
[2025-05-28 17:53:38] Starting ATLAS job with PandaID=6666949255
[2025-05-28 17:53:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 19:08:01]  *** The last 200 lines of the pilot log: ***
[2025-05-28 19:08:01]  domain=
[2025-05-28 19:08:01]  filesize=246348
[2025-05-28 19:08:01]  filetype=log
[2025-05-28 19:08:01]  guid=feba06ab-2a57-4df8-8e9b-1d185c0b4f75
[2025-05-28 19:08:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-05-28 19:08:01]  is_altstaged=None
[2025-05-28 19:08:01]  is_tar=False
[2025-05-28 19:08:01]  lfn=log.44871837._066729.job.log.tgz.1
[2025-05-28 19:08:01]  mtime=0
[2025-05-28 19:08:01]  protocol_id=None
[2025-05-28 19:08:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-28 19:08:01]  replicas=None
[2025-05-28 19:08:01]  scope=mc23_13p6TeV
[2025-05-28 19:08:01]  status=None
[2025-05-28 19:08:01]  status_code=0
[2025-05-28 19:08:01]  storage_token=
[2025-05-28 19:08:01]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6666949255/log.44871837._066729.job.log.tgz.1
[2025-05-28 19:08:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/5f/log.44871837._066729.job.log.tgz.1
[2025-05-28 19:08:01]  workdir=None
[2025-05-28 19:08:01] ]
[2025-05-28 19:08:01] 2025-05-28 16:07:36,844 | INFO     | transferring file log.44871837._066729.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6666949255/log.44871837._066729.job.log.tgz.1 to /home/ek/BOINC/slots/
[2025-05-28 19:08:01] 2025-05-28 16:07:36,844 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6666949255/log.44871837._066729.job.log.tgz.1 /home/ek/BOINC/slots/1/log.44871837._066729.job
[2025-05-28 19:08:01] 2025-05-28 16:07:36,853 | INFO     | adding to output.list: log.44871837._066729.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/5f/log.44871837._066729.job.log.tg
[2025-05-28 19:08:01] 2025-05-28 16:07:36,853 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-28 19:08:01] 2025-05-28 16:07:36,853 | INFO     | summary of transferred files:
[2025-05-28 19:08:01] 2025-05-28 16:07:36,853 | INFO     |  -- lfn=log.44871837._066729.job.log.tgz.1, status_code=0, status=transferred
[2025-05-28 19:08:01] 2025-05-28 16:07:36,853 | INFO     | stage-out finished correctly
[2025-05-28 19:08:01] 2025-05-28 16:07:36,883 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-28 19:08:01] 2025-05-28 16:07:37,542 | INFO     | PID=1470926 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-28 19:08:01] 2025-05-28 16:07:38,750 | INFO     | monitor loop #338: job 0:6666949255 is in state 'finished'
[2025-05-28 19:08:01] 2025-05-28 16:07:38,750 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-28 19:08:01] 2025-05-28 16:07:39,307 | INFO     | job 6666949255 has state=finished
[2025-05-28 19:08:01] 2025-05-28 16:07:39,307 | INFO     | preparing for final server update for job 6666949255 in state='finished'
[2025-05-28 19:08:01] 2025-05-28 16:07:39,307 | INFO     | this job has now completed (state=finished)
[2025-05-28 19:08:01] 2025-05-28 16:07:39,307 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-28 19:08:01] 2025-05-28 16:07:39,307 | INFO     | log transfer has been attempted: DONE
[2025-05-28 19:08:01] 2025-05-28 16:07:39,307 | INFO     | job 6666949255 has finished - writing final server update
[2025-05-28 19:08:01] 2025-05-28 16:07:39,308 | INFO     | total number of processed events: 400 (read)
[2025-05-28 19:08:01] 2025-05-28 16:07:39,309 | INFO     | executing command: lscpu
[2025-05-28 19:08:01] 2025-05-28 16:07:39,325 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-28 19:08:01] 2025-05-28 16:07:41,143 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-28 19:08:01] 2025-05-28 16:07:41,143 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6666949255/memory_monitor_summary.json (trf name=prmon)
[2025-05-28 19:08:01] 2025-05-28 16:07:41,144 | INFO     | extracted standard info from prmon json
[2025-05-28 19:08:01] 2025-05-28 16:07:41,144 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 19:08:01] 2025-05-28 16:07:41,144 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 19:08:01] 2025-05-28 16:07:41,144 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 19:08:01] 2025-05-28 16:07:41,144 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | fitting pss+swap vs Time
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | sum of square deviations: 89127252.5
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | sum of deviations: -10160548814.0
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | mean x: 1748446329.5
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | mean y: 2475066.5454545454
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | -- intersect: 199326181129.89435
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | intersect: 199326181129.89435
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | chi2: 0.14812787728654883
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | -- intersect: 199326181129.89435
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | current memory leak: -114.00 B/s (using 66 data points, chi2=0.15)
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | ..............................
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | . Timing measurements:
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | . get job = 0 s
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | . initial setup = 1 s
[2025-05-28 19:08:01] 2025-05-28 16:07:41,145 | INFO     | . payload setup = 3 s
[2025-05-28 19:08:01] 2025-05-28 16:07:41,146 | INFO     | . stage-in = 0 s
[2025-05-28 19:08:01] 2025-05-28 16:07:41,146 | INFO     | . payload execution = 4412 s
[2025-05-28 19:08:01] 2025-05-28 16:07:41,146 | INFO     | . stage-out = 0 s
[2025-05-28 19:08:01] 2025-05-28 16:07:41,146 | INFO     | . log creation = 0 s
[2025-05-28 19:08:01] 2025-05-28 16:07:41,146 | INFO     | ..............................
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | 
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | job summary report
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | --------------------------------------------------
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | PanDA job id: 6666949255
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | task id: 44871837
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | errors: (none)
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | pilot state: finished 
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | transexitcode: 0
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | exeerrorcode: 0
[2025-05-28 19:08:01] 2025-05-28 16:07:41,177 | INFO     | exeerrordiag: 
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | exitcode: 0
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | exitmsg: OK
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | cpuconsumptiontime: 16668 s
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | nevents: 400
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | neventsw: 0
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | pid: 1477841
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | pgrp: 1477841
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | corecount: 4
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | event service: False
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | sizes: {0: 2405234, 2: 2405440, 10: 2405468, 4419: 2431561, 4421: 2440558, 4425: 2440672}
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | --------------------------------------------------
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | 
[2025-05-28 19:08:01] 2025-05-28 16:07:41,178 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,188 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | job 6666949255 has completed (purged errors)
[2025-05-28 19:08:01] 2025-05-28 16:07:41,189 | INFO     | overall cleanup function is called
[2025-05-28 19:08:01] 2025-05-28 16:07:42,196 | INFO     | --- collectZombieJob: --- 10, [1477841]
[2025-05-28 19:08:01] 2025-05-28 16:07:42,196 | INFO     | zombie collector waiting for pid 1477841
[2025-05-28 19:08:01] 2025-05-28 16:07:42,196 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 19:08:01] 2025-05-28 16:07:42,196 | INFO     | collected zombie processes
[2025-05-28 19:08:01] 2025-05-28 16:07:42,196 | INFO     | will attempt to kill all subprocesses of pid=1477841
[2025-05-28 19:08:01] 2025-05-28 16:07:42,307 | INFO     | process IDs to be killed: [1477841] (in reverse order)
[2025-05-28 19:08:01] 2025-05-28 16:07:42,341 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 19:08:01] 2025-05-28 16:07:42,341 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 19:08:01] 2025-05-28 16:07:42,344 | INFO     | did not find any defunct processes belonging to 1477841
[2025-05-28 19:08:01] 2025-05-28 16:07:42,346 | INFO     | did not find any defunct processes belonging to 1477841
[2025-05-28 19:08:01] 2025-05-28 16:07:42,346 | INFO     | ready for new job
[2025-05-28 19:08:01] 2025-05-28 16:07:42,347 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 19:08:01] 2025-05-28 16:07:42,347 | INFO     | **************************************
[2025-05-28 19:08:01] 2025-05-28 16:07:42,347 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 19:08:01] 2025-05-28 16:07:42,347 | INFO     | **************************************
[2025-05-28 19:08:01] 2025-05-28 16:07:42,347 | INFO     | 
[2025-05-28 19:08:01] 2025-05-28 16:07:42,348 | INFO     | architecture information:
[2025-05-28 19:08:01] 2025-05-28 16:07:42,348 | INFO     | executing command: cat /etc/os-release
[2025-05-28 19:08:01] 2025-05-28 16:07:42,355 | INFO     | cat /etc/os-release:
[2025-05-28 19:08:01] NAME="CentOS Linux"
[2025-05-28 19:08:01] VERSION="7 (Core)"
[2025-05-28 19:08:01] ID="centos"
[2025-05-28 19:08:01] ID_LIKE="rhel fedora"
[2025-05-28 19:08:01] VERSION_ID="7"
[2025-05-28 19:08:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 19:08:01] ANSI_COLOR="0;31"
[2025-05-28 19:08:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 19:08:01] HOME_URL="https://www.centos.org/"
[2025-05-28 19:08:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 19:08:01] 
[2025-05-28 19:08:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 19:08:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 19:08:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 19:08:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 19:08:01] 
[2025-05-28 19:08:01] 2025-05-28 16:07:42,356 | INFO     | **************************************
[2025-05-28 19:08:01] 2025-05-28 16:07:42,858 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2025-05-28 19:08:01] 2025-05-28 16:07:42,866 | INFO     | sufficient remaining disk space (134247088128 B)
[2025-05-28 19:08:01] 2025-05-28 16:07:42,866 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 19:08:01] 2025-05-28 16:07:42,867 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 19:08:01] 2025-05-28 16:07:42,867 | INFO     | update_server=False
[2025-05-28 19:08:01] 2025-05-28 16:07:42,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 19:08:01] 2025-05-28 16:07:42,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 19:08:01] 2025-05-28 16:07:42,867 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 19:08:01] 2025-05-28 16:07:42,867 | INFO     | aborting loop
[2025-05-28 19:08:01] 2025-05-28 16:07:42,867 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 19:08:01] 2025-05-28 16:07:42,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 19:08:01] 2025-05-28 16:07:43,385 | INFO     | all payload control threads have been joined
[2025-05-28 19:08:01] 2025-05-28 16:07:43,558 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 19:08:01] 2025-05-28 16:07:43,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 19:08:01] 2025-05-28 16:07:43,558 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 19:08:01] 2025-05-28 16:07:43,605 | INFO     | all data control threads have been joined
[2025-05-28 19:08:01] 2025-05-28 16:07:43,872 | INFO     | [job] retrieve thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:43,872 | INFO     | [job] queue monitor thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:43,872 | INFO     | [job] job monitor thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:44,207 | INFO     | [payload] validate_post thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:44,259 | INFO     | [payload] failed_post thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:44,390 | INFO     | [payload] control thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:44,447 | INFO     | all job control threads have been joined
[2025-05-28 19:08:01] 2025-05-28 16:07:44,504 | INFO     | [job] validate thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:44,610 | INFO     | [data] control thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:44,624 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:44,640 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:44,872 | INFO     | [data] copytool_out thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:45,168 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:45,247 | INFO     | [data] copytool_in thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:45,452 | INFO     | [job] control thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:46,922 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:53,664 | INFO     | job.realtimelogging is not enabled
[2025-05-28 19:08:01] 2025-05-28 16:07:54,669 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 19:08:01] 2025-05-28 16:07:56,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139681547315008)>', '<ExcThread(monitor, started 139680884434688)>']
[2025-05-28 19:08:01] 2025-05-28 16:07:56,624 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 19:08:01] 2025-05-28 16:07:56,624 | INFO     | [monitor] control thread has ended
[2025-05-28 19:08:01] 2025-05-28 16:08:01,291 | INFO     | all workflow threads have been joined
[2025-05-28 19:08:01] 2025-05-28 16:08:01,291 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 19:08:01] 2025-05-28 16:08:01,291 | INFO     | traces error code: 0
[2025-05-28 19:08:01] 2025-05-28 16:08:01,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 19:08:01] 2025-05-28 16:08:01,346 [wrapper] ==== pilot stdout END ====
[2025-05-28 19:08:01] 2025-05-28 16:08:01,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 19:08:01] 2025-05-28 16:08:01,349 [wrapper] pilotpid: 1470926
[2025-05-28 19:08:01] 2025-05-28 16:08:01,350 [wrapper] Pilot exit status: 0
[2025-05-28 19:08:01] 2025-05-28 16:08:01,355 [wrapper] pandaids: 6666949255
[2025-05-28 19:08:01] 2025-05-28 16:08:01,377 [wrapper] cleanup supervisor_pilot 1524114 1470927
[2025-05-28 19:08:01] 2025-05-28 16:08:01,378 [wrapper] Test setup, not cleaning
[2025-05-28 19:08:01] 2025-05-28 16:08:01,380 [wrapper] apfmon messages muted
[2025-05-28 19:08:01] 2025-05-28 16:08:01,382 [wrapper] ==== wrapper stdout END ====
[2025-05-28 19:08:01] 2025-05-28 16:08:01,384 [wrapper] ==== wrapper stderr END ====
[2025-05-28 19:08:01]  *** Error codes and diagnostics ***
[2025-05-28 19:08:01]     "exeErrorCode": 0,
[2025-05-28 19:08:01]     "exeErrorDiag": "",
[2025-05-28 19:08:01]     "pilotErrorCode": 0,
[2025-05-28 19:08:01]     "pilotErrorDiag": "",
[2025-05-28 19:08:01]  *** Listing of results directory ***
[2025-05-28 19:08:01] total 414504
[2025-05-28 19:08:01] -rw-r--r-- 1 ek ek    495897 May 27 14:17 pilot3.tar.gz
[2025-05-28 19:08:01] -rw-r--r-- 1 ek ek      5111 May 27 14:43 queuedata.json
[2025-05-28 19:08:01] -rwx------ 1 ek ek     37140 May 27 14:44 runpilot2-wrapper.sh
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek       100 May 28 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 19:08:01] -rwxr-xr-x 1 ek ek      7986 May 28 17:53 run_atlas
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek       105 May 28 17:53 job.xml
[2025-05-28 19:08:01] -rw-r--r-- 2 ek ek 225770005 May 28 17:53 EVNT.44871834._002627.pool.root.1
[2025-05-28 19:08:01] -rw-r--r-- 2 ek ek    508879 May 28 17:53 input.tar.gz
[2025-05-28 19:08:01] -rw-r--r-- 2 ek ek     15093 May 28 17:53 start_atlas.sh
[2025-05-28 19:08:01] drwxrwx--x 2 ek ek      4096 May 28 17:53 shared
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek         0 May 28 17:53 boinc_setup_complete
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek      9842 May 28 17:53 init_data.xml
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek         0 May 28 17:53 boinc_lockfile
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek      2559 May 28 17:53 pandaJob.out
[2025-05-28 19:08:01] -rw------- 1 ek ek    991941 May 28 17:53 agis_schedconf.cvmfs.json
[2025-05-28 19:08:01] -rw------- 1 ek ek   1603667 May 28 17:53 agis_ddmendpoints.agis.ALL.json
[2025-05-28 19:08:01] drwx------ 4 ek ek      4096 May 28 17:53 pilot3
[2025-05-28 19:08:01] -rw------- 1 ek ek        95 May 28 19:07 pilot_heartbeat.json
[2025-05-28 19:08:01] -rw------- 1 ek ek 193477925 May 28 19:07 HITS.44871837._066729.pool.root.1
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek       529 May 28 19:07 boinc_task_state.xml
[2025-05-28 19:08:01] -rw------- 1 ek ek      1034 May 28 19:07 memory_monitor_summary.json
[2025-05-28 19:08:01] -rw------- 1 ek ek    246348 May 28 19:07 log.44871837._066729.job.log.tgz.1
[2025-05-28 19:08:01] -rw------- 1 ek ek      7679 May 28 19:07 heartbeat.json
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek      8192 May 28 19:08 boinc_mmap_file
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek        27 May 28 19:08 wrapper_checkpoint.txt
[2025-05-28 19:08:01] -rw------- 1 ek ek      4426 May 28 19:08 pilotlog.txt
[2025-05-28 19:08:01] -rw------- 1 ek ek    433864 May 28 19:08 log.44871837._066729.job.log.1
[2025-05-28 19:08:01] -rw------- 1 ek ek       357 May 28 19:08 output.list
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek       620 May 28 19:08 runtime_log
[2025-05-28 19:08:01] -rw------- 1 ek ek    696320 May 28 19:08 result.tar.gz
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek      8854 May 28 19:08 runtime_log.err
[2025-05-28 19:08:01] -rw------- 1 ek ek       661 May 28 19:08 BoIODmlu7d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5HZKDmQuWgwm.diag
[2025-05-28 19:08:01] -rw-rw-r-- 1 ek ek     20913 May 28 19:08 stderr.txt
[2025-05-28 19:08:01] HITS file was successfully produced:
[2025-05-28 19:08:01] -rw------- 1 ek ek 193477925 May 28 19:07 shared/HITS.pool.root.1
[2025-05-28 19:08:01]  *** Contents of shared directory: ***
[2025-05-28 19:08:01] total 410628
[2025-05-28 19:08:01] -rw-r--r-- 2 ek ek 225770005 May 28 17:53 ATLAS.root_0
[2025-05-28 19:08:01] -rw-r--r-- 2 ek ek    508879 May 28 17:53 input.tar.gz
[2025-05-28 19:08:01] -rw-r--r-- 2 ek ek     15093 May 28 17:53 start_atlas.sh
[2025-05-28 19:08:01] -rw------- 1 ek ek 193477925 May 28 19:07 HITS.pool.root.1
[2025-05-28 19:08:01] -rw------- 1 ek ek    696320 May 28 19:08 result.tar.gz
19:08:03 (1467154): run_atlas exited; CPU time 16704.796857
19:08:03 (1467154): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN