Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
19:08:06 (1538044): wrapper (7.7.26015): starting
19:08:06 (1538044): wrapper: running run_atlas (--nthreads 4)
[2025-05-28 19:08:06] Arguments: --nthreads 4
[2025-05-28 19:08:06] Threads: 4
[2025-05-28 19:08:06] Checking for CVMFS
[2025-05-28 19:08:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 19:08:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 19:08:06] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 19:08:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 19:08:06] 2.12.7.0 14849 12648 46364 146524 0 56 27727408 33554432 0 130560 0 4748463 99.988 1602503 1727 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2025-05-28 19:08:06] CVMFS is ok
[2025-05-28 19:08:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 19:08:06] Checking for apptainer binary...
[2025-05-28 19:08:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 19:08:06] Running /usr/bin/apptainer --version
[2025-05-28 19:08:06] apptainer version 1.4.0
[2025-05-28 19:08:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 19:08:06] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2025-05-28 19:08:06] apptainer works
[2025-05-28 19:08:06] Set ATHENA_PROC_NUMBER=4
[2025-05-28 19:08:06] Set ATHENA_CORE_NUMBER=4
[2025-05-28 19:08:06] Starting ATLAS job with PandaID=6666949395
[2025-05-28 19:08:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 20:26:35]  *** The last 200 lines of the pilot log: ***
[2025-05-28 20:26:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-05-28 20:26:35]  is_altstaged=None
[2025-05-28 20:26:35]  is_tar=False
[2025-05-28 20:26:35]  lfn=log.44871837._066868.job.log.tgz.1
[2025-05-28 20:26:35]  mtime=0
[2025-05-28 20:26:35]  protocol_id=None
[2025-05-28 20:26:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-28 20:26:35]  replicas=None
[2025-05-28 20:26:35]  scope=mc23_13p6TeV
[2025-05-28 20:26:35]  status=None
[2025-05-28 20:26:35]  status_code=0
[2025-05-28 20:26:35]  storage_token=
[2025-05-28 20:26:35]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6666949395/log.44871837._066868.job.log.tgz.1
[2025-05-28 20:26:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/9f/log.44871837._066868.job.log.tgz.1
[2025-05-28 20:26:35]  workdir=None
[2025-05-28 20:26:35] ]
[2025-05-28 20:26:35] 2025-05-28 17:26:10,422 | INFO     | transferring file log.44871837._066868.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6666949395/log.44871837._066868.job.log.tgz.1 to /home/ek/BOINC/slots/
[2025-05-28 20:26:35] 2025-05-28 17:26:10,422 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6666949395/log.44871837._066868.job.log.tgz.1 /home/ek/BOINC/slots/1/log.44871837._066868.job
[2025-05-28 20:26:35] 2025-05-28 17:26:10,433 | INFO     | adding to output.list: log.44871837._066868.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c0/9f/log.44871837._066868.job.log.tg
[2025-05-28 20:26:35] 2025-05-28 17:26:10,433 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-28 20:26:35] 2025-05-28 17:26:10,433 | INFO     | summary of transferred files:
[2025-05-28 20:26:35] 2025-05-28 17:26:10,433 | INFO     |  -- lfn=log.44871837._066868.job.log.tgz.1, status_code=0, status=transferred
[2025-05-28 20:26:35] 2025-05-28 17:26:10,433 | INFO     | stage-out finished correctly
[2025-05-28 20:26:35] 2025-05-28 17:26:11,917 | INFO     | monitor loop #357: job 0:6666949395 is in state 'finished'
[2025-05-28 20:26:35] 2025-05-28 17:26:11,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-28 20:26:35] 2025-05-28 17:26:12,165 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-28 20:26:35] 2025-05-28 17:26:12,195 | INFO     | job 6666949395 has state=finished
[2025-05-28 20:26:35] 2025-05-28 17:26:12,195 | INFO     | preparing for final server update for job 6666949395 in state='finished'
[2025-05-28 20:26:35] 2025-05-28 17:26:12,195 | INFO     | this job has now completed (state=finished)
[2025-05-28 20:26:35] 2025-05-28 17:26:12,195 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-28 20:26:35] 2025-05-28 17:26:12,195 | INFO     | log transfer has been attempted: DONE
[2025-05-28 20:26:35] 2025-05-28 17:26:12,195 | INFO     | job 6666949395 has finished - writing final server update
[2025-05-28 20:26:35] 2025-05-28 17:26:12,195 | INFO     | total number of processed events: 400 (read)
[2025-05-28 20:26:35] 2025-05-28 17:26:12,196 | INFO     | executing command: lscpu
[2025-05-28 20:26:35] 2025-05-28 17:26:12,211 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-28 20:26:35] 2025-05-28 17:26:14,420 | INFO     | monitor loop #358: job 0:6666949395 is in state 'finished'
[2025-05-28 20:26:35] 2025-05-28 17:26:14,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-05-28 20:26:35] 2025-05-28 17:26:14,814 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-28 20:26:35] 2025-05-28 17:26:14,814 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6666949395/memory_monitor_summary.json (trf name=prmon)
[2025-05-28 20:26:35] 2025-05-28 17:26:14,815 | INFO     | extracted standard info from prmon json
[2025-05-28 20:26:35] 2025-05-28 17:26:14,815 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 20:26:35] 2025-05-28 17:26:14,815 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 20:26:35] 2025-05-28 17:26:14,815 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 20:26:35] 2025-05-28 17:26:14,815 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 20:26:35] 2025-05-28 17:26:14,816 | INFO     | fitting pss+swap vs Time
[2025-05-28 20:26:35] 2025-05-28 17:26:14,816 | INFO     | sum of square deviations: 106336877.5
[2025-05-28 20:26:35] 2025-05-28 17:26:14,816 | INFO     | sum of deviations: -5052711434.999999
[2025-05-28 20:26:35] 2025-05-28 17:26:14,816 | INFO     | mean x: 1748450920.5
[2025-05-28 20:26:35] 2025-05-28 17:26:14,816 | INFO     | mean y: 2410100.714285714
[2025-05-28 20:26:35] 2025-05-28 17:26:14,816 | INFO     | -- intersect: 83081941560.02974
[2025-05-28 20:26:35] 2025-05-28 17:26:14,816 | INFO     | intersect: 83081941560.02974
[2025-05-28 20:26:35] 2025-05-28 17:26:14,816 | INFO     | chi2: 0.12190636188181139
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | -- intersect: 83081941560.02974
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | current memory leak: -47.52 B/s (using 70 data points, chi2=0.12)
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | ..............................
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | . Timing measurements:
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | . get job = 0 s
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | . initial setup = 1 s
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | . payload setup = 3 s
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | . stage-in = 0 s
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | . payload execution = 4659 s
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | . stage-out = 0 s
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | . log creation = 0 s
[2025-05-28 20:26:35] 2025-05-28 17:26:14,817 | INFO     | ..............................
[2025-05-28 20:26:35] 2025-05-28 17:26:15,213 | INFO     | 
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | job summary report
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | --------------------------------------------------
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | PanDA job id: 6666949395
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | task id: 44871837
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | errors: (none)
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | pilot state: finished 
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | transexitcode: 0
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | exeerrorcode: 0
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | exeerrordiag: 
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | exitcode: 0
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | exitmsg: OK
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | cpuconsumptiontime: 17723 s
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | nevents: 400
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | neventsw: 0
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | pid: 1548503
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | pgrp: 1548503
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | corecount: 4
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | event service: False
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | sizes: {0: 2405234, 2: 2405440, 11: 2405468, 4665: 2431673, 4666: 2440614, 4667: 2440670, 4670: 2440968}
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | --------------------------------------------------
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | 
[2025-05-28 20:26:35] 2025-05-28 17:26:15,214 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,226 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 20:26:35] 2025-05-28 17:26:15,227 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,227 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 20:26:35] 2025-05-28 17:26:15,227 | INFO     | job 6666949395 has completed (purged errors)
[2025-05-28 20:26:35] 2025-05-28 17:26:15,227 | INFO     | overall cleanup function is called
[2025-05-28 20:26:35] 2025-05-28 17:26:16,233 | INFO     | --- collectZombieJob: --- 10, [1548503]
[2025-05-28 20:26:35] 2025-05-28 17:26:16,233 | INFO     | zombie collector waiting for pid 1548503
[2025-05-28 20:26:35] 2025-05-28 17:26:16,233 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 20:26:35] 2025-05-28 17:26:16,234 | INFO     | collected zombie processes
[2025-05-28 20:26:35] 2025-05-28 17:26:16,234 | INFO     | will attempt to kill all subprocesses of pid=1548503
[2025-05-28 20:26:35] 2025-05-28 17:26:16,340 | INFO     | process IDs to be killed: [1548503] (in reverse order)
[2025-05-28 20:26:35] 2025-05-28 17:26:16,374 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 20:26:35] 2025-05-28 17:26:16,375 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 20:26:35] 2025-05-28 17:26:16,378 | INFO     | did not find any defunct processes belonging to 1548503
[2025-05-28 20:26:35] 2025-05-28 17:26:16,381 | INFO     | did not find any defunct processes belonging to 1548503
[2025-05-28 20:26:35] 2025-05-28 17:26:16,381 | INFO     | ready for new job
[2025-05-28 20:26:35] 2025-05-28 17:26:16,381 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 20:26:35] 2025-05-28 17:26:16,382 | INFO     | **************************************
[2025-05-28 20:26:35] 2025-05-28 17:26:16,382 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 20:26:35] 2025-05-28 17:26:16,382 | INFO     | **************************************
[2025-05-28 20:26:35] 2025-05-28 17:26:16,382 | INFO     | 
[2025-05-28 20:26:35] 2025-05-28 17:26:16,382 | INFO     | architecture information:
[2025-05-28 20:26:35] 2025-05-28 17:26:16,382 | INFO     | executing command: cat /etc/os-release
[2025-05-28 20:26:35] 2025-05-28 17:26:16,389 | INFO     | cat /etc/os-release:
[2025-05-28 20:26:35] NAME="CentOS Linux"
[2025-05-28 20:26:35] VERSION="7 (Core)"
[2025-05-28 20:26:35] ID="centos"
[2025-05-28 20:26:35] ID_LIKE="rhel fedora"
[2025-05-28 20:26:35] VERSION_ID="7"
[2025-05-28 20:26:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 20:26:35] ANSI_COLOR="0;31"
[2025-05-28 20:26:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 20:26:35] HOME_URL="https://www.centos.org/"
[2025-05-28 20:26:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 20:26:35] 
[2025-05-28 20:26:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 20:26:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 20:26:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 20:26:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 20:26:35] 
[2025-05-28 20:26:35] 2025-05-28 17:26:16,389 | INFO     | **************************************
[2025-05-28 20:26:35] 2025-05-28 17:26:16,892 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2025-05-28 20:26:35] 2025-05-28 17:26:16,904 | INFO     | sufficient remaining disk space (134409617408 B)
[2025-05-28 20:26:35] 2025-05-28 17:26:16,904 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 20:26:35] 2025-05-28 17:26:16,905 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 20:26:35] 2025-05-28 17:26:16,905 | INFO     | update_server=False
[2025-05-28 20:26:35] 2025-05-28 17:26:16,905 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 20:26:35] 2025-05-28 17:26:16,905 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 20:26:35] 2025-05-28 17:26:16,905 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 20:26:35] 2025-05-28 17:26:16,905 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 20:26:35] 2025-05-28 17:26:16,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 20:26:35] 2025-05-28 17:26:16,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 20:26:35] 2025-05-28 17:26:16,923 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-05-28 20:26:35] 2025-05-28 17:26:16,923 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-05-28 20:26:35] 2025-05-28 17:26:16,923 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 20:26:35] 2025-05-28 17:26:16,923 | INFO     | will abort loop
[2025-05-28 20:26:35] 2025-05-28 17:26:17,058 | INFO     | all payload control threads have been joined
[2025-05-28 20:26:35] 2025-05-28 17:26:17,101 | INFO     | all data control threads have been joined
[2025-05-28 20:26:35] 2025-05-28 17:26:17,910 | INFO     | [job] retrieve thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:17,928 | INFO     | [job] job monitor thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:18,063 | INFO     | [payload] control thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:18,106 | INFO     | [data] control thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:18,200 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 20:26:35] 2025-05-28 17:26:18,406 | INFO     | all job control threads have been joined
[2025-05-28 20:26:35] 2025-05-28 17:26:18,429 | INFO     | [data] copytool_in thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:18,626 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:18,910 | INFO     | [data] copytool_out thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:19,161 | INFO     | [payload] validate_post thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:19,255 | INFO     | [job] validate thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:19,373 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:19,397 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:19,411 | INFO     | [job] control thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:19,459 | INFO     | [payload] failed_post thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:19,860 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 20:26:35] 2025-05-28 17:26:20,865 | INFO     | [job] queue monitor thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:22,206 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:27,518 | INFO     | job.realtimelogging is not enabled
[2025-05-28 20:26:35] 2025-05-28 17:26:28,519 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 20:26:35] 2025-05-28 17:26:30,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140711150782272)>', '<ExcThread(monitor, started 140710443480832)>']
[2025-05-28 20:26:35] 2025-05-28 17:26:30,975 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 20:26:35] 2025-05-28 17:26:30,975 | INFO     | [monitor] control thread has ended
[2025-05-28 20:26:35] 2025-05-28 17:26:35,333 | INFO     | all workflow threads have been joined
[2025-05-28 20:26:35] 2025-05-28 17:26:35,333 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 20:26:35] 2025-05-28 17:26:35,333 | INFO     | traces error code: 0
[2025-05-28 20:26:35] 2025-05-28 17:26:35,333 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 20:26:35] 2025-05-28 17:26:35,390 [wrapper] ==== pilot stdout END ====
[2025-05-28 20:26:35] 2025-05-28 17:26:35,392 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 20:26:35] 2025-05-28 17:26:35,394 [wrapper] pilotpid: 1541766
[2025-05-28 20:26:35] 2025-05-28 17:26:35,395 [wrapper] Pilot exit status: 0
[2025-05-28 20:26:35] 2025-05-28 17:26:35,402 [wrapper] pandaids: 6666949395
[2025-05-28 20:26:35] 2025-05-28 17:26:35,426 [wrapper] cleanup supervisor_pilot 1606015 1541767
[2025-05-28 20:26:35] 2025-05-28 17:26:35,428 [wrapper] Test setup, not cleaning
[2025-05-28 20:26:35] 2025-05-28 17:26:35,430 [wrapper] apfmon messages muted
[2025-05-28 20:26:35] 2025-05-28 17:26:35,431 [wrapper] ==== wrapper stdout END ====
[2025-05-28 20:26:35] 2025-05-28 17:26:35,433 [wrapper] ==== wrapper stderr END ====
[2025-05-28 20:26:35]  *** Error codes and diagnostics ***
[2025-05-28 20:26:35]     "exeErrorCode": 0,
[2025-05-28 20:26:35]     "exeErrorDiag": "",
[2025-05-28 20:26:35]     "pilotErrorCode": 0,
[2025-05-28 20:26:35]     "pilotErrorDiag": "",
[2025-05-28 20:26:35]  *** Listing of results directory ***
[2025-05-28 20:26:35] total 423568
[2025-05-28 20:26:35] -rw-r--r-- 1 ek ek    495897 May 27 14:17 pilot3.tar.gz
[2025-05-28 20:26:35] -rw-r--r-- 1 ek ek      5111 May 27 14:43 queuedata.json
[2025-05-28 20:26:35] -rwx------ 1 ek ek     37140 May 27 14:47 runpilot2-wrapper.sh
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek       100 May 28 19:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 20:26:35] -rwxr-xr-x 1 ek ek      7986 May 28 19:08 run_atlas
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek       105 May 28 19:08 job.xml
[2025-05-28 20:26:35] -rw-r--r-- 2 ek ek 224449872 May 28 19:08 EVNT.44871834._002633.pool.root.1
[2025-05-28 20:26:35] -rw-r--r-- 2 ek ek    508881 May 28 19:08 input.tar.gz
[2025-05-28 20:26:35] -rw-r--r-- 2 ek ek     15093 May 28 19:08 start_atlas.sh
[2025-05-28 20:26:35] drwxrwx--x 2 ek ek      4096 May 28 19:08 shared
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek         0 May 28 19:08 boinc_setup_complete
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek      9842 May 28 19:08 init_data.xml
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek         0 May 28 19:08 boinc_lockfile
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek      2559 May 28 19:08 pandaJob.out
[2025-05-28 20:26:35] -rw------- 1 ek ek    991935 May 28 19:08 agis_schedconf.cvmfs.json
[2025-05-28 20:26:35] -rw------- 1 ek ek   1603667 May 28 19:08 agis_ddmendpoints.agis.ALL.json
[2025-05-28 20:26:35] drwx------ 4 ek ek      4096 May 28 19:08 pilot3
[2025-05-28 20:26:35] -rw------- 1 ek ek        95 May 28 20:25 pilot_heartbeat.json
[2025-05-28 20:26:35] -rw------- 1 ek ek 204054127 May 28 20:25 HITS.44871837._066868.pool.root.1
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek       529 May 28 20:26 boinc_task_state.xml
[2025-05-28 20:26:35] -rw------- 1 ek ek      1047 May 28 20:26 memory_monitor_summary.json
[2025-05-28 20:26:35] -rw------- 1 ek ek    235952 May 28 20:26 log.44871837._066868.job.log.tgz.1
[2025-05-28 20:26:35] -rw------- 1 ek ek      7699 May 28 20:26 heartbeat.json
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek        27 May 28 20:26 wrapper_checkpoint.txt
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek      8192 May 28 20:26 boinc_mmap_file
[2025-05-28 20:26:35] -rw------- 1 ek ek      4735 May 28 20:26 pilotlog.txt
[2025-05-28 20:26:35] -rw------- 1 ek ek    455909 May 28 20:26 log.44871837._066868.job.log.1
[2025-05-28 20:26:35] -rw------- 1 ek ek       357 May 28 20:26 output.list
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek       620 May 28 20:26 runtime_log
[2025-05-28 20:26:35] -rw------- 1 ek ek    706560 May 28 20:26 result.tar.gz
[2025-05-28 20:26:35] -rw------- 1 ek ek       666 May 28 20:26 UiFODmhx7d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhJZKDmPedFCo.diag
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek      8854 May 28 20:26 runtime_log.err
[2025-05-28 20:26:35] -rw-rw-r-- 1 ek ek     21166 May 28 20:26 stderr.txt
[2025-05-28 20:26:35] HITS file was successfully produced:
[2025-05-28 20:26:35] -rw------- 1 ek ek 204054127 May 28 20:25 shared/HITS.pool.root.1
[2025-05-28 20:26:35]  *** Contents of shared directory: ***
[2025-05-28 20:26:35] total 419680
[2025-05-28 20:26:35] -rw-r--r-- 2 ek ek 224449872 May 28 19:08 ATLAS.root_0
[2025-05-28 20:26:35] -rw-r--r-- 2 ek ek    508881 May 28 19:08 input.tar.gz
[2025-05-28 20:26:35] -rw-r--r-- 2 ek ek     15093 May 28 19:08 start_atlas.sh
[2025-05-28 20:26:35] -rw------- 1 ek ek 204054127 May 28 20:25 HITS.pool.root.1
[2025-05-28 20:26:35] -rw------- 1 ek ek    706560 May 28 20:26 result.tar.gz
20:26:37 (1538044): run_atlas exited; CPU time 17761.633771
20:26:37 (1538044): called boinc_finish(0)

</stderr_txt>
]]>

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