Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:28:13 (1059967): wrapper (7.7.26015): starting
10:28:13 (1059967): wrapper: running run_atlas (--nthreads 12)
[2025-05-27 10:28:13] Arguments: --nthreads 12
[2025-05-27 10:28:13] Threads: 12
[2025-05-27 10:28:13] Checking for CVMFS
[2025-05-27 10:28:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 10:28:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 10:28:14] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 10:28:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 10:28:14] 2.11.5.0 2633 39674 211032 146488 1 211 41865799 45568000 19520 130560 0 327926383 99.781 226694334 23164 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-05-27 10:28:14] CVMFS is ok
[2025-05-27 10:28:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-27 10:28:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-27 10:28:14] Further information can be found at the LHC@home message board.
[2025-05-27 10:28:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 10:28:14] Checking for apptainer binary...
[2025-05-27 10:28:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 10:28:14] Running /usr/bin/apptainer --version
[2025-05-27 10:28:14] apptainer version 1.4.0-1.el9
[2025-05-27 10:28:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 10:28:15] wns0112.triumf.lcg
[2025-05-27 10:28:15] apptainer works
[2025-05-27 10:28:15] Set ATHENA_PROC_NUMBER=12
[2025-05-27 10:28:15] Set ATHENA_CORE_NUMBER=12
[2025-05-27 10:28:16] Starting ATLAS job with PandaID=6667102966
[2025-05-27 10:28:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-27 10:33:22]  *** The last 200 lines of the pilot log: ***
[2025-05-27 10:33:22] 2025-05-27 17:33:07,547 | INFO     | extracted standard info from prmon json
[2025-05-27 10:33:22] 2025-05-27 17:33:07,547 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 10:33:22] 2025-05-27 17:33:07,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 10:33:22] 2025-05-27 17:33:07,548 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 10:33:22] 2025-05-27 17:33:07,548 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | WARNING  | wrong length of table data, x=[1748367021.0], y=[1557.0] (must be same and length>=4)
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | ..............................
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . Timing measurements:
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . get job = 0 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . initial setup = 3 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . payload setup = 27 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . stage-in = 0 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . payload execution = 43 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . stage-out = 2 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . log creation = 0 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | ..............................
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-27 10:33:22] 2025-05-27 17:33:07,550 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6667102966/pilotlog.txt
[2025-05-27 10:33:22] 2025-05-27 17:33:07,653 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-05-27 10:33:22] - Log from pilotlog.txt -
[2025-05-27 10:33:22] 2025-05-27 17:33:07,546 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-27 10:33:22] 2025-05-27 17:33:07,546 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6667102966/memory_monitor_summary.json (trf name=prmon)
[2025-05-27 10:33:22] 2025-05-27 17:33:07,547 | INFO     | extracted standard info from prmon json
[2025-05-27 10:33:22] 2025-05-27 17:33:07,547 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 10:33:22] 2025-05-27 17:33:07,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 10:33:22] 2025-05-27 17:33:07,548 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 10:33:22] 2025-05-27 17:33:07,548 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | WARNING  | wrong length of table data, x=[1748367021.0], y=[1557.0] (must be same and length>=4)
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | ..............................
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . Timing measurements:
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . get job = 0 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . initial setup = 3 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . payload setup = 27 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . stage-in = 0 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . payload execution = 43 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . stage-out = 2 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . log creation = 0 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | ..............................
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-27 10:33:22] 2025-05-27 17:33:07,550 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6667102966/pilotlog.txt
[2025-05-27 10:33:22] 2025-05-27 17:33:07,654 | WARNING  | 
[2025-05-27 10:33:22] [begin log extracts]
[2025-05-27 10:33:22] - Log from pilotlog.txt -
[2025-05-27 10:33:22] 2025-05-27 17:33:07,546 | INFO     | CPU arch script returned: x86-64-v4
[2025-05-27 10:33:22] 2025-05-27 17:33:07,546 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6667102966/memory_monitor_summary.json (trf name=prmon)
[2025-05-27 10:33:22] 2025-05-27 17:33:07,547 | INFO     | extracted standard info from prmon json
[2025-05-27 10:33:22] 2025-05-27 17:33:07,547 | INFO     | extracted standard memory fields from prmon json
[2025-05-27 10:33:22] 2025-05-27 17:33:07,547 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-27 10:33:22] 2025-05-27 17:33:07,548 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-27 10:33:22] 2025-05-27 17:33:07,548 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | WARNING  | wrong length of table data, x=[1748367021.0], y=[1557.0] (must be same and length>=4)
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | ..............................
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . Timing measurements:
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . get job = 0 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . initial setup = 3 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . payload setup = 27 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . stage-in = 0 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . payload execution = 43 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . stage-out = 2 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | . log creation = 0 s
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | ..............................
[2025-05-27 10:33:22] 2025-05-27 17:33:07,549 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-05-27 10:33:22] 2025-05-27 17:33:07,550 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6667102966/pilotlog.txt
[2025-05-27 10:33:22] [end log extracts]
[2025-05-27 10:33:22] 2025-05-27 17:33:07,654 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-05-27 10:33:22] 2025-05-27 17:33:07,655 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-05-27 10:33:22] 2025-05-27 17:33:08,032 | INFO     | 
[2025-05-27 10:33:22] 2025-05-27 17:33:08,032 | INFO     | job summary report
[2025-05-27 10:33:22] 2025-05-27 17:33:08,032 | INFO     | --------------------------------------------------
[2025-05-27 10:33:22] 2025-05-27 17:33:08,032 | INFO     | PanDA job id: 6667102966
[2025-05-27 10:33:22] 2025-05-27 17:33:08,032 | INFO     | task id: 44871837
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-05-27 10:30:42,787 CRITICAL Transform executor raised TransformValidationExceptio
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | pilot state: failed 
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | transexitcode: 65
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | exeerrorcode: 65
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | exitcode: 65
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | cpuconsumptiontime: 19 s
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | nevents: 0
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | neventsw: 0
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | pid: 1077566
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | pgrp: 1077566
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | corecount: 12
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | event service: False
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | sizes: {0: 2404406, 1: 2405088, 2: 2405287, 3: 2405287, 14: 2405315, 17: 2405549, 24: 2405705, 74: 2429150, 78: 2433385, 79: 2433413, 212: 2433583}
[2025-05-27 10:33:22] 2025-05-27 17:33:08,033 | INFO     | --------------------------------------------------
[2025-05-27 10:33:22] 2025-05-27 17:33:08,034 | INFO     | 
[2025-05-27 10:33:22] 2025-05-27 17:33:08,034 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-05-27 10:33:22] 2025-05-27 17:33:08,186 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,188 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,188 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,188 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,188 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-27 10:33:22] 2025-05-27 17:33:08,188 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,188 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-27 10:33:22] 2025-05-27 17:33:08,188 | INFO     | job 6667102966 has completed (purged errors)
[2025-05-27 10:33:22] 2025-05-27 17:33:08,188 | INFO     | overall cleanup function is called
[2025-05-27 10:33:22] 2025-05-27 17:33:09,195 | INFO     | --- collectZombieJob: --- 10, [1077566]
[2025-05-27 10:33:22] 2025-05-27 17:33:09,195 | INFO     | zombie collector waiting for pid 1077566
[2025-05-27 10:33:22] 2025-05-27 17:33:09,195 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-27 10:33:22] 2025-05-27 17:33:09,195 | INFO     | collected zombie processes
[2025-05-27 10:33:22] 2025-05-27 17:33:09,195 | INFO     | will attempt to kill all subprocesses of pid=1077566
[2025-05-27 10:33:22] 2025-05-27 17:33:09,798 | INFO     | process IDs to be killed: [1077566] (in reverse order)
[2025-05-27 10:33:22] 2025-05-27 17:33:10,065 | WARNING  | found no corresponding commands to process id(s)
[2025-05-27 10:33:22] 2025-05-27 17:33:10,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-27 10:33:22] 2025-05-27 17:33:10,087 | INFO     | did not find any defunct processes belonging to 1077566
[2025-05-27 10:33:22] 2025-05-27 17:33:10,099 | INFO     | did not find any defunct processes belonging to 1077566
[2025-05-27 10:33:22] 2025-05-27 17:33:10,100 | INFO     | ready for new job
[2025-05-27 10:33:22] 2025-05-27 17:33:10,100 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-27 10:33:22] 2025-05-27 17:33:10,101 | INFO     | **************************************
[2025-05-27 10:33:22] 2025-05-27 17:33:10,102 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-27 10:33:22] 2025-05-27 17:33:10,102 | INFO     | **************************************
[2025-05-27 10:33:22] 2025-05-27 17:33:10,102 | INFO     | 
[2025-05-27 10:33:22] 2025-05-27 17:33:10,104 | INFO     | architecture information:
[2025-05-27 10:33:22] 2025-05-27 17:33:10,105 | INFO     | executing command: cat /etc/os-release
[2025-05-27 10:33:22] 2025-05-27 17:33:10,121 | INFO     | cat /etc/os-release:
[2025-05-27 10:33:22] NAME="CentOS Linux"
[2025-05-27 10:33:22] VERSION="7 (Core)"
[2025-05-27 10:33:22] ID="centos"
[2025-05-27 10:33:22] ID_LIKE="rhel fedora"
[2025-05-27 10:33:22] VERSION_ID="7"
[2025-05-27 10:33:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-27 10:33:22] ANSI_COLOR="0;31"
[2025-05-27 10:33:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-27 10:33:22] HOME_URL="https://www.centos.org/"
[2025-05-27 10:33:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-27 10:33:22] 
[2025-05-27 10:33:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-27 10:33:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-27 10:33:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-27 10:33:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-27 10:33:22] 
[2025-05-27 10:33:22] 2025-05-27 17:33:10,121 | INFO     | **************************************
[2025-05-27 10:33:22] 2025-05-27 17:33:10,633 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-05-27 10:33:22] 2025-05-27 17:33:10,660 | INFO     | sufficient remaining disk space (1759467536384 B)
[2025-05-27 10:33:22] 2025-05-27 17:33:10,660 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-27 10:33:22] 2025-05-27 17:33:10,660 | INFO     | current server update state: UPDATING_FINAL
[2025-05-27 10:33:22] 2025-05-27 17:33:10,660 | INFO     | update_server=False
[2025-05-27 10:33:22] 2025-05-27 17:33:10,660 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-27 10:33:22] 2025-05-27 17:33:10,665 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-27 10:33:22] 2025-05-27 17:33:11,330 | INFO     | all payload control threads have been joined
[2025-05-27 10:33:22] 2025-05-27 17:33:11,341 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-27 10:33:22] 2025-05-27 17:33:11,341 | INFO     | aborting loop
[2025-05-27 10:33:22] 2025-05-27 17:33:11,498 | INFO     | all data control threads have been joined
[2025-05-27 10:33:22] 2025-05-27 17:33:11,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-27 10:33:22] 2025-05-27 17:33:11,668 | INFO     | PID=1065131 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-05-27 10:33:22] 2025-05-27 17:33:11,668 | INFO     | .. there are 28 such processes running
[2025-05-27 10:33:22] 2025-05-27 17:33:11,669 | INFO     | found 0 job(s) in 20 queues
[2025-05-27 10:33:22] 2025-05-27 17:33:11,669 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-27 10:33:22] 2025-05-27 17:33:11,669 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-27 10:33:22] 2025-05-27 17:33:11,679 | INFO     | [job] retrieve thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:11,992 | INFO     | [payload] failed_post thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,028 | INFO     | all job control threads have been joined
[2025-05-27 10:33:22] 2025-05-27 17:33:12,124 | INFO     | [payload] validate_pre thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,149 | INFO     | [job] create_data_payload thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,267 | INFO     | [payload] execute_payloads thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,336 | INFO     | [payload] control thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,347 | INFO     | [job] job monitor thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,420 | INFO     | [payload] validate_post thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,504 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,504 | INFO     | [data] control thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,676 | INFO     | [job] validate thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,686 | INFO     | [data] copytool_out thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:12,733 | INFO     | [data] copytool_in thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:13,034 | INFO     | [job] control thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:13,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-27 10:33:22] 2025-05-27 17:33:14,076 | INFO     | [job] queue monitor thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:15,506 | INFO     | [data] queue_monitor thread has finished
[2025-05-27 10:33:22] 2025-05-27 17:33:16,998 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140701343971136)>', '<ExcThread(monitor, started 140700427474688)>']
[2025-05-27 10:33:22] 2025-05-27 17:33:17,711 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-27 10:33:22] 2025-05-27 17:33:17,711 | INFO     | [monitor] control thread has ended
[2025-05-27 10:33:22] 2025-05-27 17:33:22,024 | INFO     | all workflow threads have been joined
[2025-05-27 10:33:22] 2025-05-27 17:33:22,024 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-27 10:33:22] 2025-05-27 17:33:22,025 | INFO     | traces error code: 0
[2025-05-27 10:33:22] 2025-05-27 17:33:22,025 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-27 10:33:22] 2025-05-27 17:33:22,222 [wrapper] ==== pilot stdout END ====
[2025-05-27 10:33:22] 2025-05-27 17:33:22,229 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-27 10:33:22] 2025-05-27 17:33:22,232 [wrapper] pilotpid: 1065131
[2025-05-27 10:33:22] 2025-05-27 17:33:22,234 [wrapper] Pilot exit status: 0
[2025-05-27 10:33:22] 2025-05-27 17:33:22,276 [wrapper] pandaids: 6667102966
[2025-05-27 10:33:22] 2025-05-27 17:33:22,342 [wrapper] cleanup supervisor_pilot 1065167 1065132
[2025-05-27 10:33:22] 2025-05-27 17:33:22,344 [wrapper] Test setup, not cleaning
[2025-05-27 10:33:22] 2025-05-27 17:33:22,351 [wrapper] apfmon messages muted
[2025-05-27 10:33:22] 2025-05-27 17:33:22,357 [wrapper] ==== wrapper stdout END ====
[2025-05-27 10:33:22] 2025-05-27 17:33:22,363 [wrapper] ==== wrapper stderr END ====
[2025-05-27 10:33:22]  *** Error codes and diagnostics ***
[2025-05-27 10:33:22]     "exeErrorCode": 65,
[2025-05-27 10:33:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-05-27 10:33:22]     "pilotErrorCode": 1305,
[2025-05-27 10:33:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-05-27 10:33:22]  *** Listing of results directory ***
[2025-05-27 10:33:22] total 223524
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc    495897 May 27 06:43 pilot3.tar.gz
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc      5111 May 27 07:35 queuedata.json
[2025-05-27 10:33:22] -rwx------. 1 boinc boinc     37140 May 27 07:39 runpilot2-wrapper.sh
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc       100 May 27 10:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-27 10:33:22] -rwxr-xr-x. 1 boinc boinc      7986 May 27 10:28 run_atlas
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc       105 May 27 10:28 job.xml
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc      6598 May 27 10:28 init_data.xml
[2025-05-27 10:33:22] -rw-r--r--. 2 boinc boinc 224844910 May 27 10:28 EVNT.44871834._002712.pool.root.1
[2025-05-27 10:33:22] -rw-r--r--. 2 boinc boinc     15093 May 27 10:28 start_atlas.sh
[2025-05-27 10:33:22] drwxrwx--x. 2 boinc boinc      4096 May 27 10:28 shared
[2025-05-27 10:33:22] -rw-r--r--. 2 boinc boinc    508883 May 27 10:28 input.tar.gz
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc         0 May 27 10:28 boinc_lockfile
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc      2559 May 27 10:28 pandaJob.out
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc    991119 May 27 10:28 agis_schedconf.cvmfs.json
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc   1603667 May 27 10:29 agis_ddmendpoints.agis.ALL.json
[2025-05-27 10:33:22] drwx------. 4 boinc boinc      4096 May 27 10:29 pilot3
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc       524 May 27 10:30 boinc_task_state.xml
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc       953 May 27 10:30 memory_monitor_summary.json
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc     21066 May 27 10:30 log.44871837._068950.job.log.tgz.1
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc        95 May 27 10:33 pilot_heartbeat.json
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc      8364 May 27 10:33 heartbeat.json
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc      8192 May 27 10:33 boinc_mmap_file
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc        23 May 27 10:33 wrapper_checkpoint.txt
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc      4747 May 27 10:33 pilotlog.txt
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc     79471 May 27 10:33 log.44871837._068950.job.log.1
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc       188 May 27 10:33 output.list
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc       620 May 27 10:33 runtime_log
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc    122880 May 27 10:33 result.tar.gz
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc      8484 May 27 10:33 runtime_log.err
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc       645 May 27 10:33 BuzLDmydAe7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHgZKDmURU22m.diag
[2025-05-27 10:33:22] -rw-r--r--. 1 boinc boinc     21742 May 27 10:33 stderr.txt
[2025-05-27 10:33:22] No HITS result produced
[2025-05-27 10:33:22]  *** Contents of shared directory: ***
[2025-05-27 10:33:22] total 220216
[2025-05-27 10:33:22] -rw-r--r--. 2 boinc boinc 224844910 May 27 10:28 ATLAS.root_0
[2025-05-27 10:33:22] -rw-r--r--. 2 boinc boinc     15093 May 27 10:28 start_atlas.sh
[2025-05-27 10:33:22] -rw-r--r--. 2 boinc boinc    508883 May 27 10:28 input.tar.gz
[2025-05-27 10:33:22] -rw-------. 1 boinc boinc    122880 May 27 10:33 result.tar.gz
10:33:23 (1059967): run_atlas exited; CPU time 31.021616
10:33:23 (1059967): called boinc_finish(0)

</stderr_txt>
]]>

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