Name | ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm_1 |
Workunit | 232633767 |
Created | 27 May 2025, 9:50:17 UTC |
Sent | 27 May 2025, 12:37:11 UTC |
Report deadline | 4 Jun 2025, 12:37:11 UTC |
Received | 5 Jun 2025, 19:09:35 UTC |
Server state | Over |
Outcome | Computation error |
Client state | Compute error |
Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
Computer ID | 10855563 |
Run time | 6 min 1 sec |
CPU time | 4 hours 18 min 13 sec |
Validate state | Invalid |
Credit | 0.00 |
Device peak FLOPS | 15.94 GFLOPS |
Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 2.51 GB |
Peak swap size | 35.64 GB |
Peak disk usage | 439.77 MB |
<core_client_version>7.20.2</core_client_version> <![CDATA[ <message> process exited with code 195 (0xc3, -61)</message> <stderr_txt> 12:05:41 (2407929): wrapper (7.7.26015): starting 12:05:41 (2407929): wrapper: running run_atlas (--nthreads 4) [2025-06-03 12:05:41] Arguments: --nthreads 4 [2025-06-03 12:05:41] Threads: 4 [2025-06-03 12:05:41] Checking for CVMFS [2025-06-03 12:05:41] No cvmfs_config command found, will try listing directly [2025-06-03 12:05:41] CVMFS is ok [2025-06-03 12:05:41] Efficiency of ATLAS tasks can be improved by the following measure(s): [2025-06-03 12:05:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2025-06-03 12:05:41] Further information can be found at the LHC@home message board. [2025-06-03 12:05:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2025-06-03 12:05:41] Checking for apptainer binary... [2025-06-03 12:05:41] which: no apptainer in ((null)) [2025-06-03 12:05:41] apptainer is not installed, using version from CVMFS [2025-06-03 12:05:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2025-06-03 12:05:41] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz [2025-06-03 12:05:41] apptainer works [2025-06-03 12:05:41] Set ATHENA_PROC_NUMBER=4 [2025-06-03 12:05:41] Set ATHENA_CORE_NUMBER=4 [2025-06-03 12:05:41] Starting ATLAS job with PandaID=6666806520 [2025-06-03 12:05:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh 02:30:51 (3950699): wrapper (7.7.26015): starting 02:30:51 (3950699): wrapper: running run_atlas (--nthreads 4) [2025-06-04 02:30:51] Arguments: --nthreads 4 [2025-06-04 02:30:51] Threads: 4 [2025-06-04 02:30:51] This job has been restarted, cleaning up previous attempt [2025-06-04 02:30:51] Checking for CVMFS [2025-06-04 02:30:51] No cvmfs_config command found, will try listing directly [2025-06-04 02:30:51] CVMFS is ok [2025-06-04 02:30:51] Efficiency of ATLAS tasks can be improved by the following measure(s): [2025-06-04 02:30:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2025-06-04 02:30:51] Further information can be found at the LHC@home message board. [2025-06-04 02:30:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2025-06-04 02:30:51] Checking for apptainer binary... [2025-06-04 02:30:51] which: no apptainer in ((null)) [2025-06-04 02:30:51] apptainer is not installed, using version from CVMFS [2025-06-04 02:30:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2025-06-04 02:30:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz [2025-06-04 02:30:52] apptainer works [2025-06-04 02:30:52] Set ATHENA_PROC_NUMBER=4 [2025-06-04 02:30:52] Set ATHENA_CORE_NUMBER=4 [2025-06-04 02:30:52] Starting ATLAS job with PandaID=6666806520 [2025-06-04 02:30:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2025-06-04 02:34:43] Job failed [2025-06-04 02:34:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment [2025-06-04 02:34:43] ++ pwd [2025-06-04 02:34:43] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/ [2025-06-04 02:34:43] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/ [2025-06-04 02:34:43] + mv ATLAS.root_0 EVNT.44871834._002499.pool.root.1 [2025-06-04 02:34:43] mv: 'ATLAS.root_0' and 'EVNT.44871834._002499.pool.root.1' are the same file [2025-06-04 02:34:43] + tar --strip-components=5 -xvf input.tar.gz [2025-06-04 02:34:43] + umask 077 [2025-06-04 02:34:43] ++ date +%s [2025-06-04 02:34:43] + ACCOUNTING_STARTTIME=1748997052 [2025-06-04 02:34:43] + echo 'Detecting resource accounting method available for the job.' [2025-06-04 02:34:43] Detecting resource accounting method available for the job. [2025-06-04 02:34:43] + JOB_ACCOUNTING= [2025-06-04 02:34:43] + command -v arc-job-cgroup [2025-06-04 02:34:43] + '[' -z '' ']' [2025-06-04 02:34:43] + GNU_TIME=/usr/bin/time [2025-06-04 02:34:43] + echo 'Looking for /usr/bin/time tool for accounting measurements' [2025-06-04 02:34:43] Looking for /usr/bin/time tool for accounting measurements [2025-06-04 02:34:43] + '[' '!' -z /usr/bin/time ']' [2025-06-04 02:34:43] + /usr/bin/time --version [2025-06-04 02:34:43] + echo 'GNU time found and will be used for job accounting.' [2025-06-04 02:34:43] GNU time found and will be used for job accounting. [2025-06-04 02:34:43] + JOB_ACCOUNTING=gnutime [2025-06-04 02:34:43] + '[' -z gnutime ']' [2025-06-04 02:34:43] + export PANDA_JSID=harvester-CERN_central_ACTA [2025-06-04 02:34:43] + PANDA_JSID=harvester-CERN_central_ACTA [2025-06-04 02:34:43] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666806520.out [2025-06-04 02:34:43] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666806520.out [2025-06-04 02:34:43] + export PILOT_NOKILL=YES [2025-06-04 02:34:43] + PILOT_NOKILL=YES [2025-06-04 02:34:43] + export GRID_GLOBAL_JOBID=ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-04 02:34:43] + GRID_GLOBAL_JOBID=ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-04 02:34:43] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-04 02:34:43] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-04 02:34:43] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2025-06-04 02:34:43] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2025-06-04 02:34:43] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch [2025-06-04 02:34:43] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch [2025-06-04 02:34:43] ++ pwd [2025-06-04 02:34:43] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot28/slots/0 [2025-06-04 02:34:43] + RUNTIME_JOB_STDIN=/dev/null [2025-06-04 02:34:43] ++ pwd [2025-06-04 02:34:43] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot28/slots/0/log.44871837._063379.job.log.1 [2025-06-04 02:34:43] ++ pwd [2025-06-04 02:34:43] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot28/slots/0/log.44871837._063379.job.log.1 [2025-06-04 02:34:43] ++ pwd [2025-06-04 02:34:43] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0.diag [2025-06-04 02:34:43] + '[' '!' -z '' ']' [2025-06-04 02:34:43] + RUNTIME_LOCAL_SCRATCH_DIR= [2025-06-04 02:34:43] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv [2025-06-04 02:34:43] + RUNTIME_FRONTEND_SEES_NODE= [2025-06-04 02:34:43] + RUNTIME_NODE_SEES_FRONTEND=yes [2025-06-04 02:34:43] + '[' '!' -z '' ']' [2025-06-04 02:34:43] + '[' -z yes ']' [2025-06-04 02:34:43] ++ pwd [2025-06-04 02:34:43] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag [2025-06-04 02:34:43] + runtimeenvironments= [2025-06-04 02:34:43] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2025-06-04 02:34:43] + RTE_function_0 1 [2025-06-04 02:34:43] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-04 02:34:43] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-04 02:34:43] + export BOINC_APP=ATLAS [2025-06-04 02:34:43] + BOINC_APP=ATLAS [2025-06-04 02:34:43] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-04 02:34:43] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-04 02:34:43] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-04 02:34:43] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-04 02:34:43] + '[' -z 1 ']' [2025-06-04 02:34:43] + '[' 1 == 1 ']' [2025-06-04 02:34:43] + shift [2025-06-04 02:34:43] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/ [2025-06-04 02:34:43] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/ [2025-06-04 02:34:43] + '[' 0 -ne 0 ']' [2025-06-04 02:34:43] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;' [2025-06-04 02:34:43] + '[' -f /etc/os-release ']' [2025-06-04 02:34:43] +++ cat /etc/os-release [2025-06-04 02:34:43] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"' [2025-06-04 02:34:43] +++ NAME='CentOS Linux' [2025-06-04 02:34:43] +++ VERSION='7 (Core)' [2025-06-04 02:34:43] +++ ID=centos [2025-06-04 02:34:43] +++ ID_LIKE='rhel fedora' [2025-06-04 02:34:43] +++ VERSION_ID=7 [2025-06-04 02:34:43] +++ PRETTY_NAME='CentOS Linux 7 (Core)' [2025-06-04 02:34:43] +++ ANSI_COLOR='0;31' [2025-06-04 02:34:43] +++ CPE_NAME=cpe:/o:centos:centos:7 [2025-06-04 02:34:43] +++ HOME_URL=https://www.centos.org/ [2025-06-04 02:34:43] +++ BUG_REPORT_URL=https://bugs.centos.org/ [2025-06-04 02:34:43] +++ CENTOS_MANTISBT_PROJECT=CentOS-7 [2025-06-04 02:34:43] +++ CENTOS_MANTISBT_PROJECT_VERSION=7 [2025-06-04 02:34:43] +++ REDHAT_SUPPORT_PRODUCT=centos [2025-06-04 02:34:43] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7 [2025-06-04 02:34:43] ++ echo 'CentOS Linux 7 (Core)' [2025-06-04 02:34:43] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)' [2025-06-04 02:34:43] + '[' -n 'CentOS Linux 7 (Core)' ']' [2025-06-04 02:34:43] + echo 'systemsoftware=CentOS Linux 7 (Core)' [2025-06-04 02:34:43] + HOME=/scratch/boinc/var/slot28/slots/0 [2025-06-04 02:34:43] + export HOME [2025-06-04 02:34:43] + cd /scratch/boinc/var/slot28/slots/0 [2025-06-04 02:34:43] + '[' '!' -z '' ']' [2025-06-04 02:34:43] + '[' -z '' ']' [2025-06-04 02:34:43] ++ /bin/hostname -f [2025-06-04 02:34:43] + nodename=skurut05.grid.cesnet.cz [2025-06-04 02:34:43] + echo nodename=skurut05.grid.cesnet.cz [2025-06-04 02:34:43] + echo Processors=2 [2025-06-04 02:34:43] + echo Nodecount=1 [2025-06-04 02:34:43] + echo Benchmark=HEPSPEC:1.0 [2025-06-04 02:34:43] + executable=./runpilot2-wrapper.sh [2025-06-04 02:34:43] + '[' '!' -f ./runpilot2-wrapper.sh ']' [2025-06-04 02:34:43] ++ dd if=./runpilot2-wrapper.sh count=1 [2025-06-04 02:34:43] ++ head -n 1 [2025-06-04 02:34:43] ++ tr -d '\0' [2025-06-04 02:34:43] + line1='#!/bin/bash' [2025-06-04 02:34:43] ++ echo '#!/bin/bash' [2025-06-04 02:34:43] ++ sed -n 's/^#! *//p' [2025-06-04 02:34:43] + shebang=/bin/bash [2025-06-04 02:34:43] ++ echo /bin/bash [2025-06-04 02:34:43] ++ awk '{print $1}' [2025-06-04 02:34:43] + interpreter=/bin/bash [2025-06-04 02:34:43] + '[' /bin/bash = /usr/bin/env ']' [2025-06-04 02:34:43] + '[' x/bin/bash = x ']' [2025-06-04 02:34:43] + type /bin/bash [2025-06-04 02:34:43] + '[' xgnutime = xgnutime ']' [2025-06-04 02:34:43] + /usr/bin/time -o /scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container [2025-06-04 02:34:43] + RESULT=2 [2025-06-04 02:34:43] + sed -i -e /nodename=/d /scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag [2025-06-04 02:34:43] ++ grep domain_name init_data.xml [2025-06-04 02:34:43] ++ awk -F '>' '{print $2}' [2025-06-04 02:34:43] ++ awk -F '<' '{print $1}' [2025-06-04 02:34:43] ++ sed -e 's# #_#g' [2025-06-04 02:34:43] + hostname=skurut05.grid.cesnet.cz [2025-06-04 02:34:43] ++ grep user_name init_data.xml [2025-06-04 02:34:43] ++ awk -F '>' '{print $2}' [2025-06-04 02:34:43] ++ awk -F '<' '{print $1}' [2025-06-04 02:34:43] ++ sed -e 's# #_#g' [2025-06-04 02:34:43] + username=praguelcg2 [2025-06-04 02:34:43] + nodename=praguelcg2@skurut05.grid.cesnet.cz [2025-06-04 02:34:43] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz [2025-06-04 02:34:43] + '[' -n 4 ']' [2025-06-04 02:34:43] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag [2025-06-04 02:34:43] + echo exitcode=2 [2025-06-04 02:34:43] + runtimeenvironments= [2025-06-04 02:34:43] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2025-06-04 02:34:43] + RTE_function_0 2 [2025-06-04 02:34:43] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-04 02:34:43] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-04 02:34:43] + export BOINC_APP=ATLAS [2025-06-04 02:34:43] + BOINC_APP=ATLAS [2025-06-04 02:34:43] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-04 02:34:43] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-04 02:34:43] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-04 02:34:43] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-04 02:34:43] + '[' -z 2 ']' [2025-06-04 02:34:43] + '[' 2 == 1 ']' [2025-06-04 02:34:43] + '[' 0 -ne 0 ']' [2025-06-04 02:34:43] + echo 'zip all output files' [2025-06-04 02:34:43] + flist='*.diag ' [2025-06-04 02:34:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 02:34:43] + '[' -e ./heartbeat.json ']' [2025-06-04 02:34:43] + flist='*.diag ./heartbeat.json' [2025-06-04 02:34:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 02:34:43] + '[' -e ./output.list ']' [2025-06-04 02:34:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 02:34:43] + '[' -e ./log.44871837._063379.job.log.1 ']' [2025-06-04 02:34:43] + flist='*.diag ./heartbeat.json ./log.44871837._063379.job.log.1' [2025-06-04 02:34:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 02:34:43] + '[' -e ./log.44871837._063379.job.log.1 ']' [2025-06-04 02:34:43] + flist='*.diag ./heartbeat.json ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1' [2025-06-04 02:34:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 02:34:43] + '[' -e ./gmlog/ ']' [2025-06-04 02:34:43] + '[' -f output.list ']' [2025-06-04 02:34:43] + tar cvf result.tar.gz ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag ./heartbeat.json ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 [2025-06-04 02:34:43] + '[' xgnutime = xcgroup ']' [2025-06-04 02:34:43] + '[' -n '' ']' [2025-06-04 02:34:43] + '[' -n '' ']' [2025-06-04 02:34:43] ++ date +%s [2025-06-04 02:34:43] + ACCOUNTING_ENDTIME=1748997239 [2025-06-04 02:34:43] ++ date -d '1970-01-01 UTC 1748997052 seconds' +%Y%m%d%H%M%SZ [2025-06-04 02:34:43] + echo LRMSStartTime=20250604023052Z [2025-06-04 02:34:43] ++ date -d '1970-01-01 UTC 1748997239 seconds' +%Y%m%d%H%M%SZ [2025-06-04 02:34:43] + echo LRMSEndTime=20250604023359Z [2025-06-04 02:34:43] + echo walltime=187 [2025-06-04 02:34:43] + echo exitcode=2 [2025-06-04 02:34:43] + exit 2 [2025-06-04 02:34:43] ./PanDA_Pilot-6666806520/pilotlog.txt [2025-06-04 02:34:43] ./PanDA_Pilot-6666806520/prmon.log [2025-06-04 02:34:43] ./PanDA_Pilot-6666806520/log.EVNTtoHITS [2025-06-04 02:34:43] ./PanDA_Pilot-6666806520/PoolFileCatalog.xml [2025-06-04 02:34:43] ./pilotlog.txt [2025-06-04 02:34:43] ./log.44871837._063379.job.log.tgz.1 [2025-06-04 02:34:43] ./runtime_log.err [2025-06-04 02:34:43] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc [2025-06-04 02:34:43] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc [2025-06-04 02:34:43] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc [2025-06-04 02:34:43] ./pilot3/pilot/util/realtimelogger.py [2025-06-04 02:34:43] ./pilot3/pilot/util/lokirealtimelogger.py [2025-06-04 02:34:43] ./pilot3/pilot/util/loggingsupport.py [2025-06-04 02:34:43] ./log.44871837._063379.job.log.1 [2025-06-04 02:34:43] ./runtime_log 12:01:58 (863847): wrapper (7.7.26015): starting 12:01:58 (863847): wrapper: running run_atlas (--nthreads 4) [2025-06-04 12:01:58] Arguments: --nthreads 4 [2025-06-04 12:01:58] Threads: 4 [2025-06-04 12:01:58] This job has been restarted, cleaning up previous attempt [2025-06-04 12:01:58] Checking for CVMFS [2025-06-04 12:01:58] No cvmfs_config command found, will try listing directly [2025-06-04 12:01:58] CVMFS is ok [2025-06-04 12:01:58] Efficiency of ATLAS tasks can be improved by the following measure(s): [2025-06-04 12:01:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2025-06-04 12:01:58] Further information can be found at the LHC@home message board. [2025-06-04 12:01:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2025-06-04 12:01:58] Checking for apptainer binary... [2025-06-04 12:01:58] which: no apptainer in ((null)) [2025-06-04 12:01:58] apptainer is not installed, using version from CVMFS [2025-06-04 12:01:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2025-06-04 12:01:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz [2025-06-04 12:01:58] apptainer works [2025-06-04 12:01:58] Set ATHENA_PROC_NUMBER=4 [2025-06-04 12:01:58] Set ATHENA_CORE_NUMBER=4 [2025-06-04 12:01:58] Starting ATLAS job with PandaID=6666806520 [2025-06-04 12:01:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2025-06-04 12:06:30] Job failed [2025-06-04 12:06:30] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment [2025-06-04 12:06:30] ++ pwd [2025-06-04 12:06:30] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/ [2025-06-04 12:06:30] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/ [2025-06-04 12:06:30] + mv ATLAS.root_0 EVNT.44871834._002499.pool.root.1 [2025-06-04 12:06:30] mv: 'ATLAS.root_0' and 'EVNT.44871834._002499.pool.root.1' are the same file [2025-06-04 12:06:30] + tar --strip-components=5 -xvf input.tar.gz [2025-06-04 12:06:30] + umask 077 [2025-06-04 12:06:30] ++ date +%s [2025-06-04 12:06:30] + ACCOUNTING_STARTTIME=1749031319 [2025-06-04 12:06:30] + echo 'Detecting resource accounting method available for the job.' [2025-06-04 12:06:30] Detecting resource accounting method available for the job. [2025-06-04 12:06:30] + JOB_ACCOUNTING= [2025-06-04 12:06:30] + command -v arc-job-cgroup [2025-06-04 12:06:30] + '[' -z '' ']' [2025-06-04 12:06:30] + GNU_TIME=/usr/bin/time [2025-06-04 12:06:30] + echo 'Looking for /usr/bin/time tool for accounting measurements' [2025-06-04 12:06:30] Looking for /usr/bin/time tool for accounting measurements [2025-06-04 12:06:30] + '[' '!' -z /usr/bin/time ']' [2025-06-04 12:06:30] + /usr/bin/time --version [2025-06-04 12:06:30] + echo 'GNU time found and will be used for job accounting.' [2025-06-04 12:06:30] GNU time found and will be used for job accounting. [2025-06-04 12:06:30] + JOB_ACCOUNTING=gnutime [2025-06-04 12:06:30] + '[' -z gnutime ']' [2025-06-04 12:06:30] + export PANDA_JSID=harvester-CERN_central_ACTA [2025-06-04 12:06:30] + PANDA_JSID=harvester-CERN_central_ACTA [2025-06-04 12:06:30] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666806520.out [2025-06-04 12:06:30] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666806520.out [2025-06-04 12:06:30] + export PILOT_NOKILL=YES [2025-06-04 12:06:30] + PILOT_NOKILL=YES [2025-06-04 12:06:30] + export GRID_GLOBAL_JOBID=ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-04 12:06:30] + GRID_GLOBAL_JOBID=ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-04 12:06:30] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-04 12:06:30] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-04 12:06:30] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2025-06-04 12:06:30] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2025-06-04 12:06:30] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch [2025-06-04 12:06:30] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch [2025-06-04 12:06:30] ++ pwd [2025-06-04 12:06:30] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot28/slots/0 [2025-06-04 12:06:30] + RUNTIME_JOB_STDIN=/dev/null [2025-06-04 12:06:30] ++ pwd [2025-06-04 12:06:30] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot28/slots/0/log.44871837._063379.job.log.1 [2025-06-04 12:06:30] ++ pwd [2025-06-04 12:06:30] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot28/slots/0/log.44871837._063379.job.log.1 [2025-06-04 12:06:30] ++ pwd [2025-06-04 12:06:30] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0.diag [2025-06-04 12:06:30] + '[' '!' -z '' ']' [2025-06-04 12:06:30] + RUNTIME_LOCAL_SCRATCH_DIR= [2025-06-04 12:06:30] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv [2025-06-04 12:06:30] + RUNTIME_FRONTEND_SEES_NODE= [2025-06-04 12:06:30] + RUNTIME_NODE_SEES_FRONTEND=yes [2025-06-04 12:06:30] + '[' '!' -z '' ']' [2025-06-04 12:06:30] + '[' -z yes ']' [2025-06-04 12:06:30] ++ pwd [2025-06-04 12:06:30] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag [2025-06-04 12:06:30] + runtimeenvironments= [2025-06-04 12:06:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2025-06-04 12:06:30] + RTE_function_0 1 [2025-06-04 12:06:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-04 12:06:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-04 12:06:30] + export BOINC_APP=ATLAS [2025-06-04 12:06:30] + BOINC_APP=ATLAS [2025-06-04 12:06:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-04 12:06:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-04 12:06:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-04 12:06:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-04 12:06:30] + '[' -z 1 ']' [2025-06-04 12:06:30] + '[' 1 == 1 ']' [2025-06-04 12:06:30] + shift [2025-06-04 12:06:30] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/ [2025-06-04 12:06:30] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/ [2025-06-04 12:06:30] + '[' 0 -ne 0 ']' [2025-06-04 12:06:30] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;' [2025-06-04 12:06:30] + '[' -f /etc/os-release ']' [2025-06-04 12:06:30] +++ cat /etc/os-release [2025-06-04 12:06:30] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"' [2025-06-04 12:06:30] +++ NAME='CentOS Linux' [2025-06-04 12:06:30] +++ VERSION='7 (Core)' [2025-06-04 12:06:30] +++ ID=centos [2025-06-04 12:06:30] +++ ID_LIKE='rhel fedora' [2025-06-04 12:06:30] +++ VERSION_ID=7 [2025-06-04 12:06:30] +++ PRETTY_NAME='CentOS Linux 7 (Core)' [2025-06-04 12:06:30] +++ ANSI_COLOR='0;31' [2025-06-04 12:06:30] +++ CPE_NAME=cpe:/o:centos:centos:7 [2025-06-04 12:06:30] +++ HOME_URL=https://www.centos.org/ [2025-06-04 12:06:30] +++ BUG_REPORT_URL=https://bugs.centos.org/ [2025-06-04 12:06:30] +++ CENTOS_MANTISBT_PROJECT=CentOS-7 [2025-06-04 12:06:30] +++ CENTOS_MANTISBT_PROJECT_VERSION=7 [2025-06-04 12:06:30] +++ REDHAT_SUPPORT_PRODUCT=centos [2025-06-04 12:06:30] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7 [2025-06-04 12:06:30] ++ echo 'CentOS Linux 7 (Core)' [2025-06-04 12:06:30] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)' [2025-06-04 12:06:30] + '[' -n 'CentOS Linux 7 (Core)' ']' [2025-06-04 12:06:30] + echo 'systemsoftware=CentOS Linux 7 (Core)' [2025-06-04 12:06:30] + HOME=/scratch/boinc/var/slot28/slots/0 [2025-06-04 12:06:30] + export HOME [2025-06-04 12:06:30] + cd /scratch/boinc/var/slot28/slots/0 [2025-06-04 12:06:30] + '[' '!' -z '' ']' [2025-06-04 12:06:30] + '[' -z '' ']' [2025-06-04 12:06:30] ++ /bin/hostname -f [2025-06-04 12:06:30] + nodename=skurut05.grid.cesnet.cz [2025-06-04 12:06:30] + echo nodename=skurut05.grid.cesnet.cz [2025-06-04 12:06:30] + echo Processors=2 [2025-06-04 12:06:30] + echo Nodecount=1 [2025-06-04 12:06:30] + echo Benchmark=HEPSPEC:1.0 [2025-06-04 12:06:30] + executable=./runpilot2-wrapper.sh [2025-06-04 12:06:30] + '[' '!' -f ./runpilot2-wrapper.sh ']' [2025-06-04 12:06:30] ++ dd if=./runpilot2-wrapper.sh count=1 [2025-06-04 12:06:30] ++ head -n 1 [2025-06-04 12:06:30] ++ tr -d '\0' [2025-06-04 12:06:30] + line1='#!/bin/bash' [2025-06-04 12:06:30] ++ echo '#!/bin/bash' [2025-06-04 12:06:30] ++ sed -n 's/^#! *//p' [2025-06-04 12:06:30] + shebang=/bin/bash [2025-06-04 12:06:30] ++ echo /bin/bash [2025-06-04 12:06:30] ++ awk '{print $1}' [2025-06-04 12:06:30] + interpreter=/bin/bash [2025-06-04 12:06:30] + '[' /bin/bash = /usr/bin/env ']' [2025-06-04 12:06:30] + '[' x/bin/bash = x ']' [2025-06-04 12:06:30] + type /bin/bash [2025-06-04 12:06:30] + '[' xgnutime = xgnutime ']' [2025-06-04 12:06:30] + /usr/bin/time -o /scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container [2025-06-04 12:06:30] + RESULT=2 [2025-06-04 12:06:30] + sed -i -e /nodename=/d /scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag [2025-06-04 12:06:30] ++ grep domain_name init_data.xml [2025-06-04 12:06:30] ++ awk -F '>' '{print $2}' [2025-06-04 12:06:30] ++ awk -F '<' '{print $1}' [2025-06-04 12:06:30] ++ sed -e 's# #_#g' [2025-06-04 12:06:30] + hostname=skurut05.grid.cesnet.cz [2025-06-04 12:06:30] ++ grep user_name init_data.xml [2025-06-04 12:06:30] ++ awk -F '>' '{print $2}' [2025-06-04 12:06:30] ++ sed -e 's# #_#g' [2025-06-04 12:06:30] ++ awk -F '<' '{print $1}' [2025-06-04 12:06:30] + username=praguelcg2 [2025-06-04 12:06:30] + nodename=praguelcg2@skurut05.grid.cesnet.cz [2025-06-04 12:06:30] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz [2025-06-04 12:06:30] + '[' -n 4 ']' [2025-06-04 12:06:30] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag [2025-06-04 12:06:30] + echo exitcode=2 [2025-06-04 12:06:30] + runtimeenvironments= [2025-06-04 12:06:30] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2025-06-04 12:06:30] + RTE_function_0 2 [2025-06-04 12:06:30] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-04 12:06:30] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-04 12:06:30] + export BOINC_APP=ATLAS [2025-06-04 12:06:30] + BOINC_APP=ATLAS [2025-06-04 12:06:30] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-04 12:06:30] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-04 12:06:30] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-04 12:06:30] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-04 12:06:30] + '[' -z 2 ']' [2025-06-04 12:06:30] + '[' 2 == 1 ']' [2025-06-04 12:06:30] + '[' 0 -ne 0 ']' [2025-06-04 12:06:30] + echo 'zip all output files' [2025-06-04 12:06:30] + flist='*.diag ' [2025-06-04 12:06:30] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 12:06:30] + '[' -e ./heartbeat.json ']' [2025-06-04 12:06:30] + flist='*.diag ./heartbeat.json' [2025-06-04 12:06:30] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 12:06:30] + '[' -e ./output.list ']' [2025-06-04 12:06:30] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 12:06:30] + '[' -e ./log.44871837._063379.job.log.1 ']' [2025-06-04 12:06:30] + flist='*.diag ./heartbeat.json ./log.44871837._063379.job.log.1' [2025-06-04 12:06:30] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 12:06:30] + '[' -e ./log.44871837._063379.job.log.1 ']' [2025-06-04 12:06:30] + flist='*.diag ./heartbeat.json ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1' [2025-06-04 12:06:30] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-04 12:06:30] + '[' -e ./gmlog/ ']' [2025-06-04 12:06:30] + '[' -f output.list ']' [2025-06-04 12:06:30] + tar cvf result.tar.gz ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag ./heartbeat.json ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 [2025-06-04 12:06:30] + '[' xgnutime = xcgroup ']' [2025-06-04 12:06:30] + '[' -n '' ']' [2025-06-04 12:06:30] + '[' -n '' ']' [2025-06-04 12:06:30] ++ date +%s [2025-06-04 12:06:30] + ACCOUNTING_ENDTIME=1749031507 [2025-06-04 12:06:30] ++ date -d '1970-01-01 UTC 1749031319 seconds' +%Y%m%d%H%M%SZ [2025-06-04 12:06:30] + echo LRMSStartTime=20250604120159Z [2025-06-04 12:06:30] ++ date -d '1970-01-01 UTC 1749031507 seconds' +%Y%m%d%H%M%SZ [2025-06-04 12:06:30] + echo LRMSEndTime=20250604120507Z [2025-06-04 12:06:30] + echo walltime=188 [2025-06-04 12:06:30] + echo exitcode=2 [2025-06-04 12:06:30] + exit 2 [2025-06-04 12:06:30] ./PanDA_Pilot-6666806520/pilotlog.txt [2025-06-04 12:06:30] ./PanDA_Pilot-6666806520/prmon.log [2025-06-04 12:06:30] ./PanDA_Pilot-6666806520/log.EVNTtoHITS [2025-06-04 12:06:30] ./PanDA_Pilot-6666806520/PoolFileCatalog.xml [2025-06-04 12:06:30] ./pilotlog.txt [2025-06-04 12:06:30] ./log.44871837._063379.job.log.tgz.1 [2025-06-04 12:06:30] ./runtime_log.err [2025-06-04 12:06:30] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc [2025-06-04 12:06:30] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc [2025-06-04 12:06:30] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc [2025-06-04 12:06:30] ./pilot3/pilot/util/realtimelogger.py [2025-06-04 12:06:30] ./pilot3/pilot/util/lokirealtimelogger.py [2025-06-04 12:06:30] ./pilot3/pilot/util/loggingsupport.py [2025-06-04 12:06:30] ./log.44871837._063379.job.log.1 [2025-06-04 12:06:30] ./runtime_log 14:05:52 (1071716): wrapper (7.7.26015): starting 14:05:52 (1071716): wrapper: running run_atlas (--nthreads 4) [2025-06-04 14:05:52] Arguments: --nthreads 4 [2025-06-04 14:05:52] Threads: 4 [2025-06-04 14:05:52] This job has been restarted, cleaning up previous attempt [2025-06-04 14:05:52] Checking for CVMFS [2025-06-04 14:05:52] No cvmfs_config command found, will try listing directly [2025-06-04 14:05:52] CVMFS is ok [2025-06-04 14:05:52] Efficiency of ATLAS tasks can be improved by the following measure(s): [2025-06-04 14:05:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2025-06-04 14:05:52] Further information can be found at the LHC@home message board. [2025-06-04 14:05:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2025-06-04 14:05:52] Checking for apptainer binary... [2025-06-04 14:05:52] which: no apptainer in ((null)) [2025-06-04 14:05:52] apptainer is not installed, using version from CVMFS [2025-06-04 14:05:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2025-06-04 14:05:52] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz [2025-06-04 14:05:52] apptainer works [2025-06-04 14:05:52] Set ATHENA_PROC_NUMBER=4 [2025-06-04 14:05:52] Set ATHENA_CORE_NUMBER=4 [2025-06-04 14:05:53] Starting ATLAS job with PandaID=6666806520 [2025-06-04 14:05:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh 20:54:31 (147761): wrapper (7.7.26015): starting 20:54:31 (147761): wrapper: running run_atlas (--nthreads 4) [2025-06-05 20:54:31] Arguments: --nthreads 4 [2025-06-05 20:54:31] Threads: 4 [2025-06-05 20:54:31] This job has been restarted, cleaning up previous attempt [2025-06-05 20:54:31] Checking for CVMFS [2025-06-05 20:54:31] No cvmfs_config command found, will try listing directly [2025-06-05 20:54:31] CVMFS is ok [2025-06-05 20:54:32] Efficiency of ATLAS tasks can be improved by the following measure(s): [2025-06-05 20:54:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io. [2025-06-05 20:54:32] Further information can be found at the LHC@home message board. [2025-06-05 20:54:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 [2025-06-05 20:54:32] Checking for apptainer binary... [2025-06-05 20:54:32] which: no apptainer in ((null)) [2025-06-05 20:54:32] apptainer is not installed, using version from CVMFS [2025-06-05 20:54:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname [2025-06-05 20:54:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz [2025-06-05 20:54:32] apptainer works [2025-06-05 20:54:32] Set ATHENA_PROC_NUMBER=4 [2025-06-05 20:54:32] Set ATHENA_CORE_NUMBER=4 [2025-06-05 20:54:32] Starting ATLAS job with PandaID=6666806520 [2025-06-05 20:54:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot28/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh [2025-06-05 20:57:43] Job failed [2025-06-05 20:57:43] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot28/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment [2025-06-05 20:57:43] ++ pwd [2025-06-05 20:57:43] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/ [2025-06-05 20:57:43] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot28/slots/0/ [2025-06-05 20:57:43] + mv ATLAS.root_0 EVNT.44871834._002499.pool.root.1 [2025-06-05 20:57:43] mv: 'ATLAS.root_0' and 'EVNT.44871834._002499.pool.root.1' are the same file [2025-06-05 20:57:43] + tar --strip-components=5 -xvf input.tar.gz [2025-06-05 20:57:43] + umask 077 [2025-06-05 20:57:43] ++ date +%s [2025-06-05 20:57:43] + ACCOUNTING_STARTTIME=1749149672 [2025-06-05 20:57:43] + echo 'Detecting resource accounting method available for the job.' [2025-06-05 20:57:43] Detecting resource accounting method available for the job. [2025-06-05 20:57:43] + JOB_ACCOUNTING= [2025-06-05 20:57:43] + command -v arc-job-cgroup [2025-06-05 20:57:43] + '[' -z '' ']' [2025-06-05 20:57:43] + GNU_TIME=/usr/bin/time [2025-06-05 20:57:43] + echo 'Looking for /usr/bin/time tool for accounting measurements' [2025-06-05 20:57:43] Looking for /usr/bin/time tool for accounting measurements [2025-06-05 20:57:43] + '[' '!' -z /usr/bin/time ']' [2025-06-05 20:57:43] + /usr/bin/time --version [2025-06-05 20:57:43] + echo 'GNU time found and will be used for job accounting.' [2025-06-05 20:57:43] GNU time found and will be used for job accounting. [2025-06-05 20:57:43] + JOB_ACCOUNTING=gnutime [2025-06-05 20:57:43] + '[' -z gnutime ']' [2025-06-05 20:57:43] + export PANDA_JSID=harvester-CERN_central_ACTA [2025-06-05 20:57:43] + PANDA_JSID=harvester-CERN_central_ACTA [2025-06-05 20:57:43] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666806520.out [2025-06-05 20:57:43] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666806520.out [2025-06-05 20:57:43] + export PILOT_NOKILL=YES [2025-06-05 20:57:43] + PILOT_NOKILL=YES [2025-06-05 20:57:43] + export GRID_GLOBAL_JOBID=ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-05 20:57:43] + GRID_GLOBAL_JOBID=ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-05 20:57:43] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-05 20:57:43] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm [2025-06-05 20:57:43] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2025-06-05 20:57:43] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest [2025-06-05 20:57:43] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch [2025-06-05 20:57:43] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch [2025-06-05 20:57:43] ++ pwd [2025-06-05 20:57:43] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot28/slots/0 [2025-06-05 20:57:43] + RUNTIME_JOB_STDIN=/dev/null [2025-06-05 20:57:43] ++ pwd [2025-06-05 20:57:43] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot28/slots/0/log.44871837._063379.job.log.1 [2025-06-05 20:57:43] ++ pwd [2025-06-05 20:57:43] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot28/slots/0/log.44871837._063379.job.log.1 [2025-06-05 20:57:43] ++ pwd [2025-06-05 20:57:43] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0.diag [2025-06-05 20:57:43] + '[' '!' -z '' ']' [2025-06-05 20:57:43] + RUNTIME_LOCAL_SCRATCH_DIR= [2025-06-05 20:57:43] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv [2025-06-05 20:57:43] + RUNTIME_FRONTEND_SEES_NODE= [2025-06-05 20:57:43] + RUNTIME_NODE_SEES_FRONTEND=yes [2025-06-05 20:57:43] + '[' '!' -z '' ']' [2025-06-05 20:57:43] + '[' -z yes ']' [2025-06-05 20:57:43] ++ pwd [2025-06-05 20:57:43] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag [2025-06-05 20:57:43] + runtimeenvironments= [2025-06-05 20:57:43] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2025-06-05 20:57:43] + RTE_function_0 1 [2025-06-05 20:57:43] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-05 20:57:43] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-05 20:57:43] + export BOINC_APP=ATLAS [2025-06-05 20:57:43] + BOINC_APP=ATLAS [2025-06-05 20:57:43] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-05 20:57:43] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-05 20:57:43] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-05 20:57:43] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-05 20:57:43] + '[' -z 1 ']' [2025-06-05 20:57:43] + '[' 1 == 1 ']' [2025-06-05 20:57:43] + shift [2025-06-05 20:57:43] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/ [2025-06-05 20:57:43] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot28/slots/0/ [2025-06-05 20:57:43] + '[' 0 -ne 0 ']' [2025-06-05 20:57:43] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;' [2025-06-05 20:57:43] + '[' -f /etc/os-release ']' [2025-06-05 20:57:43] +++ cat /etc/os-release [2025-06-05 20:57:43] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"' [2025-06-05 20:57:43] +++ NAME='CentOS Linux' [2025-06-05 20:57:43] +++ VERSION='7 (Core)' [2025-06-05 20:57:43] +++ ID=centos [2025-06-05 20:57:43] +++ ID_LIKE='rhel fedora' [2025-06-05 20:57:43] +++ VERSION_ID=7 [2025-06-05 20:57:43] +++ PRETTY_NAME='CentOS Linux 7 (Core)' [2025-06-05 20:57:43] +++ ANSI_COLOR='0;31' [2025-06-05 20:57:43] +++ CPE_NAME=cpe:/o:centos:centos:7 [2025-06-05 20:57:43] +++ HOME_URL=https://www.centos.org/ [2025-06-05 20:57:43] +++ BUG_REPORT_URL=https://bugs.centos.org/ [2025-06-05 20:57:43] +++ CENTOS_MANTISBT_PROJECT=CentOS-7 [2025-06-05 20:57:43] +++ CENTOS_MANTISBT_PROJECT_VERSION=7 [2025-06-05 20:57:43] +++ REDHAT_SUPPORT_PRODUCT=centos [2025-06-05 20:57:43] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7 [2025-06-05 20:57:43] ++ echo 'CentOS Linux 7 (Core)' [2025-06-05 20:57:43] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)' [2025-06-05 20:57:43] + '[' -n 'CentOS Linux 7 (Core)' ']' [2025-06-05 20:57:43] + echo 'systemsoftware=CentOS Linux 7 (Core)' [2025-06-05 20:57:43] + HOME=/scratch/boinc/var/slot28/slots/0 [2025-06-05 20:57:43] + export HOME [2025-06-05 20:57:43] + cd /scratch/boinc/var/slot28/slots/0 [2025-06-05 20:57:43] + '[' '!' -z '' ']' [2025-06-05 20:57:43] + '[' -z '' ']' [2025-06-05 20:57:43] ++ /bin/hostname -f [2025-06-05 20:57:43] + nodename=skurut05.grid.cesnet.cz [2025-06-05 20:57:43] + echo nodename=skurut05.grid.cesnet.cz [2025-06-05 20:57:43] + echo Processors=2 [2025-06-05 20:57:43] + echo Nodecount=1 [2025-06-05 20:57:43] + echo Benchmark=HEPSPEC:1.0 [2025-06-05 20:57:43] + executable=./runpilot2-wrapper.sh [2025-06-05 20:57:43] + '[' '!' -f ./runpilot2-wrapper.sh ']' [2025-06-05 20:57:43] ++ dd if=./runpilot2-wrapper.sh count=1 [2025-06-05 20:57:43] ++ head -n 1 [2025-06-05 20:57:43] ++ tr -d '\0' [2025-06-05 20:57:43] + line1='#!/bin/bash' [2025-06-05 20:57:43] ++ echo '#!/bin/bash' [2025-06-05 20:57:43] ++ sed -n 's/^#! *//p' [2025-06-05 20:57:43] + shebang=/bin/bash [2025-06-05 20:57:43] ++ echo /bin/bash [2025-06-05 20:57:43] ++ awk '{print $1}' [2025-06-05 20:57:43] + interpreter=/bin/bash [2025-06-05 20:57:43] + '[' /bin/bash = /usr/bin/env ']' [2025-06-05 20:57:43] + '[' x/bin/bash = x ']' [2025-06-05 20:57:43] + type /bin/bash [2025-06-05 20:57:43] + '[' xgnutime = xgnutime ']' [2025-06-05 20:57:43] + /usr/bin/time -o /scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container [2025-06-05 20:57:43] + RESULT=2 [2025-06-05 20:57:43] + sed -i -e /nodename=/d /scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag [2025-06-05 20:57:43] ++ grep domain_name init_data.xml [2025-06-05 20:57:43] ++ awk -F '>' '{print $2}' [2025-06-05 20:57:43] ++ awk -F '<' '{print $1}' [2025-06-05 20:57:43] ++ sed -e 's# #_#g' [2025-06-05 20:57:43] + hostname=skurut05.grid.cesnet.cz [2025-06-05 20:57:43] ++ grep user_name init_data.xml [2025-06-05 20:57:43] ++ awk -F '>' '{print $2}' [2025-06-05 20:57:43] ++ awk -F '<' '{print $1}' [2025-06-05 20:57:43] ++ sed -e 's# #_#g' [2025-06-05 20:57:43] + username=praguelcg2 [2025-06-05 20:57:43] + nodename=praguelcg2@skurut05.grid.cesnet.cz [2025-06-05 20:57:43] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz [2025-06-05 20:57:43] + '[' -n 4 ']' [2025-06-05 20:57:43] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot28/slots/0/ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag [2025-06-05 20:57:43] + echo exitcode=2 [2025-06-05 20:57:43] + runtimeenvironments= [2025-06-05 20:57:43] + runtimeenvironments='APPS/HEP/ATLAS-SITE;' [2025-06-05 20:57:43] + RTE_function_0 2 [2025-06-05 20:57:43] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-05 20:57:43] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome [2025-06-05 20:57:43] + export BOINC_APP=ATLAS [2025-06-05 20:57:43] + BOINC_APP=ATLAS [2025-06-05 20:57:43] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-05 20:57:43] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC [2025-06-05 20:57:43] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-05 20:57:43] + RESULT_TEMPLATE=templates/ATLAS_OUT_2 [2025-06-05 20:57:43] + '[' -z 2 ']' [2025-06-05 20:57:43] + '[' 2 == 1 ']' [2025-06-05 20:57:43] + '[' 0 -ne 0 ']' [2025-06-05 20:57:43] + echo 'zip all output files' [2025-06-05 20:57:43] + flist='*.diag ' [2025-06-05 20:57:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-05 20:57:43] + '[' -e ./heartbeat.json ']' [2025-06-05 20:57:43] + flist='*.diag ./heartbeat.json' [2025-06-05 20:57:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-05 20:57:43] + '[' -e ./output.list ']' [2025-06-05 20:57:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-05 20:57:43] + '[' -e ./log.44871837._063379.job.log.1 ']' [2025-06-05 20:57:43] + flist='*.diag ./heartbeat.json ./log.44871837._063379.job.log.1' [2025-06-05 20:57:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-05 20:57:43] + '[' -e ./log.44871837._063379.job.log.1 ']' [2025-06-05 20:57:43] + flist='*.diag ./heartbeat.json ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1' [2025-06-05 20:57:43] + for f in ./heartbeat.json ./output.list ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 ./gmlog/ [2025-06-05 20:57:43] + '[' -e ./gmlog/ ']' [2025-06-05 20:57:43] + '[' -f output.list ']' [2025-06-05 20:57:43] + tar cvf result.tar.gz ll8LDmnu2d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm0kYKDmVNeLVm.diag ./heartbeat.json ./log.44871837._063379.job.log.1 ./log.44871837._063379.job.log.1 [2025-06-05 20:57:43] + '[' xgnutime = xcgroup ']' [2025-06-05 20:57:43] + '[' -n '' ']' [2025-06-05 20:57:43] + '[' -n '' ']' [2025-06-05 20:57:43] ++ date +%s [2025-06-05 20:57:43] + ACCOUNTING_ENDTIME=1749149859 [2025-06-05 20:57:43] ++ date -d '1970-01-01 UTC 1749149672 seconds' +%Y%m%d%H%M%SZ [2025-06-05 20:57:43] + echo LRMSStartTime=20250605205432Z [2025-06-05 20:57:43] ++ date -d '1970-01-01 UTC 1749149859 seconds' +%Y%m%d%H%M%SZ [2025-06-05 20:57:43] + echo LRMSEndTime=20250605205739Z [2025-06-05 20:57:43] + echo walltime=187 [2025-06-05 20:57:43] + echo exitcode=2 [2025-06-05 20:57:43] + exit 2 [2025-06-05 20:57:43] ./PanDA_Pilot-6666806520/pilotlog.txt [2025-06-05 20:57:43] ./PanDA_Pilot-6666806520/prmon.log [2025-06-05 20:57:43] ./PanDA_Pilot-6666806520/log.EVNTtoHITS [2025-06-05 20:57:43] ./PanDA_Pilot-6666806520/PoolFileCatalog.xml [2025-06-05 20:57:43] ./pilotlog.txt [2025-06-05 20:57:43] ./log.44871837._063379.job.log.tgz.1 [2025-06-05 20:57:43] ./runtime_log.err [2025-06-05 20:57:43] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc [2025-06-05 20:57:43] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc [2025-06-05 20:57:43] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc [2025-06-05 20:57:43] ./pilot3/pilot/util/realtimelogger.py [2025-06-05 20:57:43] ./pilot3/pilot/util/lokirealtimelogger.py [2025-06-05 20:57:43] ./pilot3/pilot/util/loggingsupport.py [2025-06-05 20:57:43] ./log.44871837._063379.job.log.1 [2025-06-05 20:57:43] ./runtime_log 21:07:56 (147761): run_atlas exited; CPU time 19.142472 21:07:56 (147761): app exit status: 0x1 21:07:56 (147761): called boinc_finish(195) </stderr_txt> ]]>
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