Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
k
[2025-06-03 08:43:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 08:43:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 08:43:10] Further information can be found at the LHC@home message board.
[2025-06-03 08:43:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:43:10] Checking for apptainer binary...
[2025-06-03 08:43:10] which: no apptainer in ((null))
[2025-06-03 08:43:10] apptainer is not installed, using version from CVMFS
[2025-06-03 08:43:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:43:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-03 08:43:10] apptainer works
[2025-06-03 08:43:10] Set ATHENA_PROC_NUMBER=4
[2025-06-03 08:43:10] Set ATHENA_CORE_NUMBER=4
[2025-06-03 08:43:10] Starting ATLAS job with PandaID=6666805706
[2025-06-03 08:43:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:10:44 (689861): wrapper (7.7.26015): starting
09:10:44 (689861): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 09:10:44] Arguments: --nthreads 4
[2025-06-03 09:10:44] Threads: 4
[2025-06-03 09:10:44] This job has been restarted, cleaning up previous attempt
[2025-06-03 09:10:44] Checking for CVMFS
[2025-06-03 09:10:44] No cvmfs_config command found, will try listing directly
[2025-06-03 09:10:44] CVMFS is ok
[2025-06-03 09:10:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 09:10:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 09:10:44] Further information can be found at the LHC@home message board.
[2025-06-03 09:10:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 09:10:44] Checking for apptainer binary...
[2025-06-03 09:10:44] which: no apptainer in ((null))
[2025-06-03 09:10:44] apptainer is not installed, using version from CVMFS
[2025-06-03 09:10:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 09:10:44] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-03 09:10:44] apptainer works
[2025-06-03 09:10:44] Set ATHENA_PROC_NUMBER=4
[2025-06-03 09:10:44] Set ATHENA_CORE_NUMBER=4
[2025-06-03 09:10:44] Starting ATLAS job with PandaID=6666805706
[2025-06-03 09:10:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:35:08 (3050562): wrapper (7.7.26015): starting
19:35:08 (3050562): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 19:35:08] Arguments: --nthreads 4
[2025-06-03 19:35:08] Threads: 4
[2025-06-03 19:35:08] This job has been restarted, cleaning up previous attempt
[2025-06-03 19:35:08] Checking for CVMFS
[2025-06-03 19:35:08] No cvmfs_config command found, will try listing directly
[2025-06-03 19:35:08] CVMFS is ok
[2025-06-03 19:35:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 19:35:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 19:35:08] Further information can be found at the LHC@home message board.
[2025-06-03 19:35:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 19:35:08] Checking for apptainer binary...
[2025-06-03 19:35:08] which: no apptainer in ((null))
[2025-06-03 19:35:08] apptainer is not installed, using version from CVMFS
[2025-06-03 19:35:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 19:35:09] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-03 19:35:09] apptainer works
[2025-06-03 19:35:09] Set ATHENA_PROC_NUMBER=4
[2025-06-03 19:35:09] Set ATHENA_CORE_NUMBER=4
[2025-06-03 19:35:09] Starting ATLAS job with PandaID=6666805706
[2025-06-03 19:35:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 19:38:20] Job failed
[2025-06-03 19:38:20] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 19:38:20] ++ pwd
[2025-06-03 19:38:20] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 19:38:20] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 19:38:20] + mv ATLAS.root_0 EVNT.44871834._002491.pool.root.1
[2025-06-03 19:38:20] mv: 'ATLAS.root_0' and 'EVNT.44871834._002491.pool.root.1' are the same file
[2025-06-03 19:38:20] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 19:38:20] + umask 077
[2025-06-03 19:38:20] ++ date +%s
[2025-06-03 19:38:20] + ACCOUNTING_STARTTIME=1748972109
[2025-06-03 19:38:20] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 19:38:20] Detecting resource accounting method available for the job.
[2025-06-03 19:38:20] + JOB_ACCOUNTING=
[2025-06-03 19:38:20] + command -v arc-job-cgroup
[2025-06-03 19:38:20] + '[' -z '' ']'
[2025-06-03 19:38:20] + GNU_TIME=/usr/bin/time
[2025-06-03 19:38:20] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 19:38:20] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 19:38:20] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 19:38:20] + /usr/bin/time --version
[2025-06-03 19:38:20] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 19:38:20] GNU time found and will be used for job accounting.
[2025-06-03 19:38:20] + JOB_ACCOUNTING=gnutime
[2025-06-03 19:38:20] + '[' -z gnutime ']'
[2025-06-03 19:38:20] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 19:38:20] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 19:38:20] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666805706.out
[2025-06-03 19:38:20] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666805706.out
[2025-06-03 19:38:20] + export PILOT_NOKILL=YES
[2025-06-03 19:38:20] + PILOT_NOKILL=YES
[2025-06-03 19:38:20] + export GRID_GLOBAL_JOBID=RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-03 19:38:20] + GRID_GLOBAL_JOBID=RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-03 19:38:20] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-03 19:38:20] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-03 19:38:20] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 19:38:20] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 19:38:20] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-03 19:38:20] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-03 19:38:20] ++ pwd
[2025-06-03 19:38:20] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot20/slots/0
[2025-06-03 19:38:20] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 19:38:20] ++ pwd
[2025-06-03 19:38:20] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot20/slots/0/log.44871837._063180.job.log.1
[2025-06-03 19:38:20] ++ pwd
[2025-06-03 19:38:20] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot20/slots/0/log.44871837._063180.job.log.1
[2025-06-03 19:38:20] ++ pwd
[2025-06-03 19:38:20] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0.diag
[2025-06-03 19:38:20] + '[' '!' -z '' ']'
[2025-06-03 19:38:20] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 19:38:20] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 19:38:20] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 19:38:20] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 19:38:20] + '[' '!' -z '' ']'
[2025-06-03 19:38:20] + '[' -z yes ']'
[2025-06-03 19:38:20] ++ pwd
[2025-06-03 19:38:20] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-03 19:38:20] + runtimeenvironments=
[2025-06-03 19:38:20] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 19:38:20] + RTE_function_0 1
[2025-06-03 19:38:20] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 19:38:20] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 19:38:20] + export BOINC_APP=ATLAS
[2025-06-03 19:38:20] + BOINC_APP=ATLAS
[2025-06-03 19:38:20] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 19:38:20] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 19:38:20] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 19:38:20] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 19:38:20] + '[' -z 1 ']'
[2025-06-03 19:38:20] + '[' 1 == 1 ']'
[2025-06-03 19:38:20] + shift
[2025-06-03 19:38:20] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 19:38:20] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 19:38:20] + '[' 0 -ne 0 ']'
[2025-06-03 19:38:20] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 19:38:20] + '[' -f /etc/os-release ']'
[2025-06-03 19:38:20] +++ cat /etc/os-release
[2025-06-03 19:38:20] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 19:38:20] +++ NAME='CentOS Linux'
[2025-06-03 19:38:20] +++ VERSION='7 (Core)'
[2025-06-03 19:38:20] +++ ID=centos
[2025-06-03 19:38:20] +++ ID_LIKE='rhel fedora'
[2025-06-03 19:38:20] +++ VERSION_ID=7
[2025-06-03 19:38:20] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 19:38:20] +++ ANSI_COLOR='0;31'
[2025-06-03 19:38:20] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 19:38:20] +++ HOME_URL=https://www.centos.org/
[2025-06-03 19:38:20] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 19:38:20] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 19:38:20] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 19:38:20] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 19:38:20] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 19:38:20] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 19:38:20] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 19:38:20] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 19:38:20] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 19:38:20] + HOME=/scratch/boinc/var/slot20/slots/0
[2025-06-03 19:38:20] + export HOME
[2025-06-03 19:38:20] + cd /scratch/boinc/var/slot20/slots/0
[2025-06-03 19:38:20] + '[' '!' -z '' ']'
[2025-06-03 19:38:20] + '[' -z '' ']'
[2025-06-03 19:38:20] ++ /bin/hostname -f
[2025-06-03 19:38:20] + nodename=skurut14.grid.cesnet.cz
[2025-06-03 19:38:20] + echo nodename=skurut14.grid.cesnet.cz
[2025-06-03 19:38:20] + echo Processors=2
[2025-06-03 19:38:20] + echo Nodecount=1
[2025-06-03 19:38:20] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 19:38:20] + executable=./runpilot2-wrapper.sh
[2025-06-03 19:38:20] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 19:38:20] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 19:38:20] ++ head -n 1
[2025-06-03 19:38:20] ++ tr -d '\0'
[2025-06-03 19:38:20] + line1='#!/bin/bash'
[2025-06-03 19:38:20] ++ echo '#!/bin/bash'
[2025-06-03 19:38:20] ++ sed -n 's/^#! *//p'
[2025-06-03 19:38:20] + shebang=/bin/bash
[2025-06-03 19:38:20] ++ echo /bin/bash
[2025-06-03 19:38:20] ++ awk '{print $1}'
[2025-06-03 19:38:20] + interpreter=/bin/bash
[2025-06-03 19:38:20] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 19:38:20] + '[' x/bin/bash = x ']'
[2025-06-03 19:38:20] + type /bin/bash
[2025-06-03 19:38:20] + '[' xgnutime = xgnutime ']'
[2025-06-03 19:38:20] + /usr/bin/time -o /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 19:38:20] + RESULT=2
[2025-06-03 19:38:20] + sed -i -e /nodename=/d /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-03 19:38:20] ++ grep domain_name init_data.xml
[2025-06-03 19:38:20] ++ awk -F '>' '{print $2}'
[2025-06-03 19:38:20] ++ awk -F '<' '{print $1}'
[2025-06-03 19:38:20] ++ sed -e 's# #_#g'
[2025-06-03 19:38:20] + hostname=skurut14.grid.cesnet.cz
[2025-06-03 19:38:20] ++ grep user_name init_data.xml
[2025-06-03 19:38:20] ++ awk -F '>' '{print $2}'
[2025-06-03 19:38:20] ++ awk -F '<' '{print $1}'
[2025-06-03 19:38:20] ++ sed -e 's# #_#g'
[2025-06-03 19:38:20] + username=praguelcg2
[2025-06-03 19:38:20] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-03 19:38:20] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-03 19:38:20] + '[' -n 4 ']'
[2025-06-03 19:38:20] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-03 19:38:20] + echo exitcode=2
[2025-06-03 19:38:20] + runtimeenvironments=
[2025-06-03 19:38:20] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 19:38:20] + RTE_function_0 2
[2025-06-03 19:38:20] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 19:38:20] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 19:38:20] + export BOINC_APP=ATLAS
[2025-06-03 19:38:20] + BOINC_APP=ATLAS
[2025-06-03 19:38:20] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 19:38:20] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 19:38:20] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 19:38:20] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 19:38:20] + '[' -z 2 ']'
[2025-06-03 19:38:20] + '[' 2 == 1 ']'
[2025-06-03 19:38:20] + '[' 0 -ne 0 ']'
[2025-06-03 19:38:20] + echo 'zip all output files'
[2025-06-03 19:38:20] + flist='*.diag '
[2025-06-03 19:38:20] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 19:38:20] + '[' -e ./heartbeat.json ']'
[2025-06-03 19:38:20] + flist='*.diag  ./heartbeat.json'
[2025-06-03 19:38:20] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 19:38:20] + '[' -e ./output.list ']'
[2025-06-03 19:38:20] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 19:38:20] + '[' -e ./log.44871837._063180.job.log.1 ']'
[2025-06-03 19:38:20] + flist='*.diag  ./heartbeat.json ./log.44871837._063180.job.log.1'
[2025-06-03 19:38:20] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 19:38:20] + '[' -e ./log.44871837._063180.job.log.1 ']'
[2025-06-03 19:38:20] + flist='*.diag  ./heartbeat.json ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1'
[2025-06-03 19:38:20] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 19:38:20] + '[' -e ./gmlog/ ']'
[2025-06-03 19:38:20] + '[' -f output.list ']'
[2025-06-03 19:38:20] + tar cvf result.tar.gz RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag ./heartbeat.json ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1
[2025-06-03 19:38:20] + '[' xgnutime = xcgroup ']'
[2025-06-03 19:38:20] + '[' -n '' ']'
[2025-06-03 19:38:20] + '[' -n '' ']'
[2025-06-03 19:38:20] ++ date +%s
[2025-06-03 19:38:20] + ACCOUNTING_ENDTIME=1748972300
[2025-06-03 19:38:20] ++ date -d '1970-01-01 UTC 1748972109 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 19:38:20] + echo LRMSStartTime=20250603193509Z
[2025-06-03 19:38:20] ++ date -d '1970-01-01 UTC 1748972300 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 19:38:20] + echo LRMSEndTime=20250603193820Z
[2025-06-03 19:38:20] + echo walltime=191
[2025-06-03 19:38:20] + echo exitcode=2
[2025-06-03 19:38:20] + exit 2
[2025-06-03 19:38:20] ./log.44871837._063180.job.log.1
[2025-06-03 19:38:20] ./pilotlog.txt
[2025-06-03 19:38:20] ./runtime_log.err
[2025-06-03 19:38:20] ./PanDA_Pilot-6666805706/prmon.log
[2025-06-03 19:38:20] ./PanDA_Pilot-6666805706/pilotlog.txt
[2025-06-03 19:38:20] ./PanDA_Pilot-6666805706/PoolFileCatalog.xml
[2025-06-03 19:38:20] ./PanDA_Pilot-6666805706/log.EVNTtoHITS
[2025-06-03 19:38:20] ./runtime_log
[2025-06-03 19:38:20] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 19:38:20] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 19:38:20] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 19:38:20] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 19:38:20] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 19:38:20] ./pilot3/pilot/util/realtimelogger.py
22:46:35 (3747681): wrapper (7.7.26015): starting
22:46:35 (3747681): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 22:46:35] Arguments: --nthreads 4
[2025-06-03 22:46:35] Threads: 4
[2025-06-03 22:46:35] This job has been restarted, cleaning up previous attempt
[2025-06-03 22:46:35] Checking for CVMFS
[2025-06-03 22:46:35] No cvmfs_config command found, will try listing directly
[2025-06-03 22:46:35] CVMFS is ok
[2025-06-03 22:46:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 22:46:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 22:46:35] Further information can be found at the LHC@home message board.
[2025-06-03 22:46:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:46:35] Checking for apptainer binary...
[2025-06-03 22:46:35] which: no apptainer in ((null))
[2025-06-03 22:46:35] apptainer is not installed, using version from CVMFS
[2025-06-03 22:46:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:46:35] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-03 22:46:35] apptainer works
[2025-06-03 22:46:35] Set ATHENA_PROC_NUMBER=4
[2025-06-03 22:46:35] Set ATHENA_CORE_NUMBER=4
[2025-06-03 22:46:35] Starting ATLAS job with PandaID=6666805706
[2025-06-03 22:46:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 22:50:57] Job failed
[2025-06-03 22:50:57] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 22:50:57] ++ pwd
[2025-06-03 22:50:57] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 22:50:57] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 22:50:57] + mv ATLAS.root_0 EVNT.44871834._002491.pool.root.1
[2025-06-03 22:50:57] mv: 'ATLAS.root_0' and 'EVNT.44871834._002491.pool.root.1' are the same file
[2025-06-03 22:50:57] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 22:50:57] + umask 077
[2025-06-03 22:50:57] ++ date +%s
[2025-06-03 22:50:57] + ACCOUNTING_STARTTIME=1748983595
[2025-06-03 22:50:57] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 22:50:57] Detecting resource accounting method available for the job.
[2025-06-03 22:50:57] + JOB_ACCOUNTING=
[2025-06-03 22:50:57] + command -v arc-job-cgroup
[2025-06-03 22:50:57] + '[' -z '' ']'
[2025-06-03 22:50:57] + GNU_TIME=/usr/bin/time
[2025-06-03 22:50:57] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 22:50:57] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 22:50:57] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 22:50:57] + /usr/bin/time --version
[2025-06-03 22:50:57] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 22:50:57] GNU time found and will be used for job accounting.
[2025-06-03 22:50:57] + JOB_ACCOUNTING=gnutime
[2025-06-03 22:50:57] + '[' -z gnutime ']'
[2025-06-03 22:50:57] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 22:50:57] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 22:50:57] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666805706.out
[2025-06-03 22:50:57] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666805706.out
[2025-06-03 22:50:57] + export PILOT_NOKILL=YES
[2025-06-03 22:50:57] + PILOT_NOKILL=YES
[2025-06-03 22:50:57] + export GRID_GLOBAL_JOBID=RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-03 22:50:57] + GRID_GLOBAL_JOBID=RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-03 22:50:57] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-03 22:50:57] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-03 22:50:57] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 22:50:57] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 22:50:57] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-03 22:50:57] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-03 22:50:57] ++ pwd
[2025-06-03 22:50:57] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot20/slots/0
[2025-06-03 22:50:57] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 22:50:57] ++ pwd
[2025-06-03 22:50:57] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot20/slots/0/log.44871837._063180.job.log.1
[2025-06-03 22:50:57] ++ pwd
[2025-06-03 22:50:57] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot20/slots/0/log.44871837._063180.job.log.1
[2025-06-03 22:50:57] ++ pwd
[2025-06-03 22:50:57] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0.diag
[2025-06-03 22:50:57] + '[' '!' -z '' ']'
[2025-06-03 22:50:57] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 22:50:57] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 22:50:57] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 22:50:57] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 22:50:57] + '[' '!' -z '' ']'
[2025-06-03 22:50:57] + '[' -z yes ']'
[2025-06-03 22:50:57] ++ pwd
[2025-06-03 22:50:57] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-03 22:50:57] + runtimeenvironments=
[2025-06-03 22:50:57] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 22:50:57] + RTE_function_0 1
[2025-06-03 22:50:57] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 22:50:57] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 22:50:57] + export BOINC_APP=ATLAS
[2025-06-03 22:50:57] + BOINC_APP=ATLAS
[2025-06-03 22:50:57] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 22:50:57] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 22:50:57] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 22:50:57] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 22:50:57] + '[' -z 1 ']'
[2025-06-03 22:50:57] + '[' 1 == 1 ']'
[2025-06-03 22:50:57] + shift
[2025-06-03 22:50:57] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 22:50:57] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 22:50:57] + '[' 0 -ne 0 ']'
[2025-06-03 22:50:57] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 22:50:57] + '[' -f /etc/os-release ']'
[2025-06-03 22:50:57] +++ cat /etc/os-release
[2025-06-03 22:50:57] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 22:50:57] +++ NAME='CentOS Linux'
[2025-06-03 22:50:57] +++ VERSION='7 (Core)'
[2025-06-03 22:50:57] +++ ID=centos
[2025-06-03 22:50:57] +++ ID_LIKE='rhel fedora'
[2025-06-03 22:50:57] +++ VERSION_ID=7
[2025-06-03 22:50:57] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 22:50:57] +++ ANSI_COLOR='0;31'
[2025-06-03 22:50:57] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 22:50:57] +++ HOME_URL=https://www.centos.org/
[2025-06-03 22:50:57] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 22:50:57] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 22:50:57] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 22:50:57] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 22:50:57] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 22:50:57] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 22:50:57] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 22:50:57] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 22:50:57] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 22:50:57] + HOME=/scratch/boinc/var/slot20/slots/0
[2025-06-03 22:50:57] + export HOME
[2025-06-03 22:50:57] + cd /scratch/boinc/var/slot20/slots/0
[2025-06-03 22:50:57] + '[' '!' -z '' ']'
[2025-06-03 22:50:57] + '[' -z '' ']'
[2025-06-03 22:50:57] ++ /bin/hostname -f
[2025-06-03 22:50:57] + nodename=skurut14.grid.cesnet.cz
[2025-06-03 22:50:57] + echo nodename=skurut14.grid.cesnet.cz
[2025-06-03 22:50:57] + echo Processors=2
[2025-06-03 22:50:57] + echo Nodecount=1
[2025-06-03 22:50:57] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 22:50:57] + executable=./runpilot2-wrapper.sh
[2025-06-03 22:50:57] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 22:50:57] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 22:50:57] ++ head -n 1
[2025-06-03 22:50:57] ++ tr -d '\0'
[2025-06-03 22:50:57] + line1='#!/bin/bash'
[2025-06-03 22:50:57] ++ echo '#!/bin/bash'
[2025-06-03 22:50:57] ++ sed -n 's/^#! *//p'
[2025-06-03 22:50:57] + shebang=/bin/bash
[2025-06-03 22:50:57] ++ echo /bin/bash
[2025-06-03 22:50:57] ++ awk '{print $1}'
[2025-06-03 22:50:57] + interpreter=/bin/bash
[2025-06-03 22:50:57] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 22:50:57] + '[' x/bin/bash = x ']'
[2025-06-03 22:50:57] + type /bin/bash
[2025-06-03 22:50:57] + '[' xgnutime = xgnutime ']'
[2025-06-03 22:50:57] + /usr/bin/time -o /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 22:50:57] + RESULT=2
[2025-06-03 22:50:57] + sed -i -e /nodename=/d /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-03 22:50:57] ++ grep domain_name init_data.xml
[2025-06-03 22:50:57] ++ awk -F '>' '{print $2}'
[2025-06-03 22:50:57] ++ awk -F '<' '{print $1}'
[2025-06-03 22:50:57] ++ sed -e 's# #_#g'
[2025-06-03 22:50:57] + hostname=skurut14.grid.cesnet.cz
[2025-06-03 22:50:57] ++ grep user_name init_data.xml
[2025-06-03 22:50:57] ++ awk -F '>' '{print $2}'
[2025-06-03 22:50:57] ++ awk -F '<' '{print $1}'
[2025-06-03 22:50:57] ++ sed -e 's# #_#g'
[2025-06-03 22:50:57] + username=praguelcg2
[2025-06-03 22:50:57] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-03 22:50:57] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-03 22:50:57] + '[' -n 4 ']'
[2025-06-03 22:50:57] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-03 22:50:57] + echo exitcode=2
[2025-06-03 22:50:57] + runtimeenvironments=
[2025-06-03 22:50:57] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 22:50:57] + RTE_function_0 2
[2025-06-03 22:50:57] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 22:50:57] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 22:50:57] + export BOINC_APP=ATLAS
[2025-06-03 22:50:57] + BOINC_APP=ATLAS
[2025-06-03 22:50:57] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 22:50:57] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 22:50:57] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 22:50:57] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 22:50:57] + '[' -z 2 ']'
[2025-06-03 22:50:57] + '[' 2 == 1 ']'
[2025-06-03 22:50:57] + '[' 0 -ne 0 ']'
[2025-06-03 22:50:57] + echo 'zip all output files'
[2025-06-03 22:50:57] + flist='*.diag '
[2025-06-03 22:50:57] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 22:50:57] + '[' -e ./heartbeat.json ']'
[2025-06-03 22:50:57] + flist='*.diag  ./heartbeat.json'
[2025-06-03 22:50:57] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 22:50:57] + '[' -e ./output.list ']'
[2025-06-03 22:50:57] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 22:50:57] + '[' -e ./log.44871837._063180.job.log.1 ']'
[2025-06-03 22:50:57] + flist='*.diag  ./heartbeat.json ./log.44871837._063180.job.log.1'
[2025-06-03 22:50:57] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 22:50:57] + '[' -e ./log.44871837._063180.job.log.1 ']'
[2025-06-03 22:50:57] + flist='*.diag  ./heartbeat.json ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1'
[2025-06-03 22:50:57] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-03 22:50:57] + '[' -e ./gmlog/ ']'
[2025-06-03 22:50:57] + '[' -f output.list ']'
[2025-06-03 22:50:57] + tar cvf result.tar.gz RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag ./heartbeat.json ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1
[2025-06-03 22:50:57] + '[' xgnutime = xcgroup ']'
[2025-06-03 22:50:57] + '[' -n '' ']'
[2025-06-03 22:50:57] + '[' -n '' ']'
[2025-06-03 22:50:57] ++ date +%s
[2025-06-03 22:50:57] + ACCOUNTING_ENDTIME=1748983786
[2025-06-03 22:50:57] ++ date -d '1970-01-01 UTC 1748983595 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 22:50:57] + echo LRMSStartTime=20250603224635Z
[2025-06-03 22:50:57] ++ date -d '1970-01-01 UTC 1748983786 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 22:50:57] + echo LRMSEndTime=20250603224946Z
[2025-06-03 22:50:57] + echo walltime=191
[2025-06-03 22:50:57] + echo exitcode=2
[2025-06-03 22:50:57] + exit 2
[2025-06-03 22:50:57] ./log.44871837._063180.job.log.1
[2025-06-03 22:50:57] ./pilotlog.txt
[2025-06-03 22:50:57] ./runtime_log.err
[2025-06-03 22:50:57] ./PanDA_Pilot-6666805706/prmon.log
[2025-06-03 22:50:57] ./PanDA_Pilot-6666805706/pilotlog.txt
[2025-06-03 22:50:57] ./PanDA_Pilot-6666805706/PoolFileCatalog.xml
[2025-06-03 22:50:57] ./PanDA_Pilot-6666805706/log.EVNTtoHITS
[2025-06-03 22:50:57] ./runtime_log
[2025-06-03 22:50:57] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 22:50:57] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 22:50:57] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 22:50:57] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 22:50:57] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 22:50:57] ./pilot3/pilot/util/realtimelogger.py
17:59:26 (3215101): wrapper (7.7.26015): starting
17:59:26 (3215101): wrapper: running run_atlas (--nthreads 4)
[2025-06-04 17:59:26] Arguments: --nthreads 4
[2025-06-04 17:59:26] Threads: 4
[2025-06-04 17:59:26] This job has been restarted, cleaning up previous attempt
[2025-06-04 17:59:26] Checking for CVMFS
[2025-06-04 17:59:26] No cvmfs_config command found, will try listing directly
[2025-06-04 17:59:26] CVMFS is ok
[2025-06-04 17:59:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-04 17:59:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-04 17:59:26] Further information can be found at the LHC@home message board.
[2025-06-04 17:59:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-04 17:59:26] Checking for apptainer binary...
[2025-06-04 17:59:26] which: no apptainer in ((null))
[2025-06-04 17:59:26] apptainer is not installed, using version from CVMFS
[2025-06-04 17:59:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-04 17:59:27] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-04 17:59:27] apptainer works
[2025-06-04 17:59:27] Set ATHENA_PROC_NUMBER=4
[2025-06-04 17:59:27] Set ATHENA_CORE_NUMBER=4
[2025-06-04 17:59:27] Starting ATLAS job with PandaID=6666805706
[2025-06-04 17:59:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-04 18:02:49] Job failed
[2025-06-04 18:02:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-04 18:02:49] ++ pwd
[2025-06-04 18:02:49] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-04 18:02:49] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-04 18:02:49] + mv ATLAS.root_0 EVNT.44871834._002491.pool.root.1
[2025-06-04 18:02:49] mv: 'ATLAS.root_0' and 'EVNT.44871834._002491.pool.root.1' are the same file
[2025-06-04 18:02:49] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-04 18:02:49] + umask 077
[2025-06-04 18:02:49] ++ date +%s
[2025-06-04 18:02:49] + ACCOUNTING_STARTTIME=1749052767
[2025-06-04 18:02:49] + echo 'Detecting resource accounting method available for the job.'
[2025-06-04 18:02:49] Detecting resource accounting method available for the job.
[2025-06-04 18:02:49] + JOB_ACCOUNTING=
[2025-06-04 18:02:49] + command -v arc-job-cgroup
[2025-06-04 18:02:49] + '[' -z '' ']'
[2025-06-04 18:02:49] + GNU_TIME=/usr/bin/time
[2025-06-04 18:02:49] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-04 18:02:49] Looking for /usr/bin/time tool for accounting measurements
[2025-06-04 18:02:49] + '[' '!' -z /usr/bin/time ']'
[2025-06-04 18:02:49] + /usr/bin/time --version
[2025-06-04 18:02:49] + echo 'GNU time found and will be used for job accounting.'
[2025-06-04 18:02:49] GNU time found and will be used for job accounting.
[2025-06-04 18:02:49] + JOB_ACCOUNTING=gnutime
[2025-06-04 18:02:49] + '[' -z gnutime ']'
[2025-06-04 18:02:49] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-04 18:02:49] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-04 18:02:49] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666805706.out
[2025-06-04 18:02:49] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666805706.out
[2025-06-04 18:02:49] + export PILOT_NOKILL=YES
[2025-06-04 18:02:49] + PILOT_NOKILL=YES
[2025-06-04 18:02:49] + export GRID_GLOBAL_JOBID=RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-04 18:02:49] + GRID_GLOBAL_JOBID=RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-04 18:02:49] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-04 18:02:49] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-04 18:02:49] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-04 18:02:49] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-04 18:02:49] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-04 18:02:49] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-04 18:02:49] ++ pwd
[2025-06-04 18:02:49] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot20/slots/0
[2025-06-04 18:02:49] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-04 18:02:49] ++ pwd
[2025-06-04 18:02:49] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot20/slots/0/log.44871837._063180.job.log.1
[2025-06-04 18:02:49] ++ pwd
[2025-06-04 18:02:49] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot20/slots/0/log.44871837._063180.job.log.1
[2025-06-04 18:02:49] ++ pwd
[2025-06-04 18:02:49] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0.diag
[2025-06-04 18:02:49] + '[' '!' -z '' ']'
[2025-06-04 18:02:49] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-04 18:02:49] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-04 18:02:49] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-04 18:02:49] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-04 18:02:49] + '[' '!' -z '' ']'
[2025-06-04 18:02:49] + '[' -z yes ']'
[2025-06-04 18:02:49] ++ pwd
[2025-06-04 18:02:49] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-04 18:02:49] + runtimeenvironments=
[2025-06-04 18:02:49] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-04 18:02:49] + RTE_function_0 1
[2025-06-04 18:02:49] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-04 18:02:49] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-04 18:02:49] + export BOINC_APP=ATLAS
[2025-06-04 18:02:49] + BOINC_APP=ATLAS
[2025-06-04 18:02:49] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-04 18:02:49] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-04 18:02:49] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-04 18:02:49] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-04 18:02:49] + '[' -z 1 ']'
[2025-06-04 18:02:49] + '[' 1 == 1 ']'
[2025-06-04 18:02:49] + shift
[2025-06-04 18:02:49] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-04 18:02:49] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-04 18:02:49] + '[' 0 -ne 0 ']'
[2025-06-04 18:02:49] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-04 18:02:49] + '[' -f /etc/os-release ']'
[2025-06-04 18:02:49] +++ cat /etc/os-release
[2025-06-04 18:02:49] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-04 18:02:49] +++ NAME='CentOS Linux'
[2025-06-04 18:02:49] +++ VERSION='7 (Core)'
[2025-06-04 18:02:49] +++ ID=centos
[2025-06-04 18:02:49] +++ ID_LIKE='rhel fedora'
[2025-06-04 18:02:49] +++ VERSION_ID=7
[2025-06-04 18:02:49] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-04 18:02:49] +++ ANSI_COLOR='0;31'
[2025-06-04 18:02:49] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-04 18:02:49] +++ HOME_URL=https://www.centos.org/
[2025-06-04 18:02:49] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-04 18:02:49] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-04 18:02:49] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-04 18:02:49] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-04 18:02:49] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-04 18:02:49] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-04 18:02:49] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-04 18:02:49] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-04 18:02:49] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-04 18:02:49] + HOME=/scratch/boinc/var/slot20/slots/0
[2025-06-04 18:02:49] + export HOME
[2025-06-04 18:02:49] + cd /scratch/boinc/var/slot20/slots/0
[2025-06-04 18:02:49] + '[' '!' -z '' ']'
[2025-06-04 18:02:49] + '[' -z '' ']'
[2025-06-04 18:02:49] ++ /bin/hostname -f
[2025-06-04 18:02:49] + nodename=skurut14.grid.cesnet.cz
[2025-06-04 18:02:49] + echo nodename=skurut14.grid.cesnet.cz
[2025-06-04 18:02:49] + echo Processors=2
[2025-06-04 18:02:49] + echo Nodecount=1
[2025-06-04 18:02:49] + echo Benchmark=HEPSPEC:1.0
[2025-06-04 18:02:49] + executable=./runpilot2-wrapper.sh
[2025-06-04 18:02:49] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-04 18:02:49] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-04 18:02:49] ++ head -n 1
[2025-06-04 18:02:49] ++ tr -d '\0'
[2025-06-04 18:02:49] + line1='#!/bin/bash'
[2025-06-04 18:02:49] ++ echo '#!/bin/bash'
[2025-06-04 18:02:49] ++ sed -n 's/^#! *//p'
[2025-06-04 18:02:49] + shebang=/bin/bash
[2025-06-04 18:02:49] ++ echo /bin/bash
[2025-06-04 18:02:49] ++ awk '{print $1}'
[2025-06-04 18:02:49] + interpreter=/bin/bash
[2025-06-04 18:02:49] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-04 18:02:49] + '[' x/bin/bash = x ']'
[2025-06-04 18:02:49] + type /bin/bash
[2025-06-04 18:02:49] + '[' xgnutime = xgnutime ']'
[2025-06-04 18:02:49] + /usr/bin/time -o /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-04 18:02:49] + RESULT=2
[2025-06-04 18:02:49] + sed -i -e /nodename=/d /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-04 18:02:49] ++ grep domain_name init_data.xml
[2025-06-04 18:02:49] ++ awk -F '>' '{print $2}'
[2025-06-04 18:02:49] ++ awk -F '<' '{print $1}'
[2025-06-04 18:02:49] ++ sed -e 's# #_#g'
[2025-06-04 18:02:49] + hostname=skurut14.grid.cesnet.cz
[2025-06-04 18:02:49] ++ grep user_name init_data.xml
[2025-06-04 18:02:49] ++ awk -F '>' '{print $2}'
[2025-06-04 18:02:49] ++ awk -F '<' '{print $1}'
[2025-06-04 18:02:49] ++ sed -e 's# #_#g'
[2025-06-04 18:02:49] + username=praguelcg2
[2025-06-04 18:02:49] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-04 18:02:49] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-04 18:02:49] + '[' -n 4 ']'
[2025-06-04 18:02:49] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-04 18:02:49] + echo exitcode=2
[2025-06-04 18:02:49] + runtimeenvironments=
[2025-06-04 18:02:49] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-04 18:02:49] + RTE_function_0 2
[2025-06-04 18:02:49] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-04 18:02:49] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-04 18:02:49] + export BOINC_APP=ATLAS
[2025-06-04 18:02:49] + BOINC_APP=ATLAS
[2025-06-04 18:02:49] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-04 18:02:49] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-04 18:02:49] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-04 18:02:49] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-04 18:02:49] + '[' -z 2 ']'
[2025-06-04 18:02:49] + '[' 2 == 1 ']'
[2025-06-04 18:02:49] + '[' 0 -ne 0 ']'
[2025-06-04 18:02:49] + echo 'zip all output files'
[2025-06-04 18:02:49] + flist='*.diag '
[2025-06-04 18:02:49] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-04 18:02:49] + '[' -e ./heartbeat.json ']'
[2025-06-04 18:02:49] + flist='*.diag  ./heartbeat.json'
[2025-06-04 18:02:49] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-04 18:02:49] + '[' -e ./output.list ']'
[2025-06-04 18:02:49] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-04 18:02:49] + '[' -e ./log.44871837._063180.job.log.1 ']'
[2025-06-04 18:02:49] + flist='*.diag  ./heartbeat.json ./log.44871837._063180.job.log.1'
[2025-06-04 18:02:49] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-04 18:02:49] + '[' -e ./log.44871837._063180.job.log.1 ']'
[2025-06-04 18:02:49] + flist='*.diag  ./heartbeat.json ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1'
[2025-06-04 18:02:49] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-04 18:02:49] + '[' -e ./gmlog/ ']'
[2025-06-04 18:02:49] + '[' -f output.list ']'
[2025-06-04 18:02:49] + tar cvf result.tar.gz RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag ./heartbeat.json ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1
[2025-06-04 18:02:49] + '[' xgnutime = xcgroup ']'
[2025-06-04 18:02:49] + '[' -n '' ']'
[2025-06-04 18:02:49] + '[' -n '' ']'
[2025-06-04 18:02:49] ++ date +%s
[2025-06-04 18:02:49] + ACCOUNTING_ENDTIME=1749052958
[2025-06-04 18:02:49] ++ date -d '1970-01-01 UTC 1749052767 seconds' +%Y%m%d%H%M%SZ
[2025-06-04 18:02:49] + echo LRMSStartTime=20250604175927Z
[2025-06-04 18:02:49] ++ date -d '1970-01-01 UTC 1749052958 seconds' +%Y%m%d%H%M%SZ
[2025-06-04 18:02:49] + echo LRMSEndTime=20250604180238Z
[2025-06-04 18:02:49] + echo walltime=191
[2025-06-04 18:02:49] + echo exitcode=2
[2025-06-04 18:02:49] + exit 2
[2025-06-04 18:02:49] ./log.44871837._063180.job.log.1
[2025-06-04 18:02:49] ./pilotlog.txt
[2025-06-04 18:02:49] ./runtime_log.err
[2025-06-04 18:02:49] ./PanDA_Pilot-6666805706/prmon.log
[2025-06-04 18:02:49] ./PanDA_Pilot-6666805706/pilotlog.txt
[2025-06-04 18:02:49] ./PanDA_Pilot-6666805706/PoolFileCatalog.xml
[2025-06-04 18:02:49] ./PanDA_Pilot-6666805706/log.EVNTtoHITS
[2025-06-04 18:02:49] ./runtime_log
[2025-06-04 18:02:49] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-04 18:02:49] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-04 18:02:49] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-04 18:02:49] ./pilot3/pilot/util/loggingsupport.py
[2025-06-04 18:02:49] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-04 18:02:49] ./pilot3/pilot/util/realtimelogger.py
15:12:56 (3491835): wrapper (7.7.26015): starting
15:12:56 (3491835): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 15:12:56] Arguments: --nthreads 4
[2025-06-06 15:12:56] Threads: 4
[2025-06-06 15:12:56] This job has been restarted, cleaning up previous attempt
[2025-06-06 15:12:56] Checking for CVMFS
[2025-06-06 15:12:56] No cvmfs_config command found, will try listing directly
[2025-06-06 15:12:56] CVMFS is ok
[2025-06-06 15:12:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 15:12:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 15:12:56] Further information can be found at the LHC@home message board.
[2025-06-06 15:12:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 15:12:56] Checking for apptainer binary...
[2025-06-06 15:12:56] which: no apptainer in ((null))
[2025-06-06 15:12:56] apptainer is not installed, using version from CVMFS
[2025-06-06 15:12:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 15:12:56] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-06 15:12:56] apptainer works
[2025-06-06 15:12:56] Set ATHENA_PROC_NUMBER=4
[2025-06-06 15:12:56] Set ATHENA_CORE_NUMBER=4
[2025-06-06 15:12:56] Starting ATLAS job with PandaID=6666805706
[2025-06-06 15:12:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 15:16:04] Job failed
[2025-06-06 15:16:04] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-06 15:16:04] ++ pwd
[2025-06-06 15:16:04] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 15:16:04] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 15:16:04] + mv ATLAS.root_0 EVNT.44871834._002491.pool.root.1
[2025-06-06 15:16:04] mv: 'ATLAS.root_0' and 'EVNT.44871834._002491.pool.root.1' are the same file
[2025-06-06 15:16:04] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-06 15:16:04] + umask 077
[2025-06-06 15:16:04] ++ date +%s
[2025-06-06 15:16:04] + ACCOUNTING_STARTTIME=1749215577
[2025-06-06 15:16:04] + echo 'Detecting resource accounting method available for the job.'
[2025-06-06 15:16:04] Detecting resource accounting method available for the job.
[2025-06-06 15:16:04] + JOB_ACCOUNTING=
[2025-06-06 15:16:04] + command -v arc-job-cgroup
[2025-06-06 15:16:04] + '[' -z '' ']'
[2025-06-06 15:16:04] + GNU_TIME=/usr/bin/time
[2025-06-06 15:16:04] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-06 15:16:04] Looking for /usr/bin/time tool for accounting measurements
[2025-06-06 15:16:04] + '[' '!' -z /usr/bin/time ']'
[2025-06-06 15:16:04] + /usr/bin/time --version
[2025-06-06 15:16:04] + echo 'GNU time found and will be used for job accounting.'
[2025-06-06 15:16:04] GNU time found and will be used for job accounting.
[2025-06-06 15:16:04] + JOB_ACCOUNTING=gnutime
[2025-06-06 15:16:04] + '[' -z gnutime ']'
[2025-06-06 15:16:04] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 15:16:04] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 15:16:04] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666805706.out
[2025-06-06 15:16:04] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666805706.out
[2025-06-06 15:16:04] + export PILOT_NOKILL=YES
[2025-06-06 15:16:04] + PILOT_NOKILL=YES
[2025-06-06 15:16:04] + export GRID_GLOBAL_JOBID=RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-06 15:16:04] + GRID_GLOBAL_JOBID=RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-06 15:16:04] + export GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-06 15:16:04] + GRID_GLOBAL_JOBURL=https://arc-boinc-03.cern.ch:443/arex/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m
[2025-06-06 15:16:04] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 15:16:04] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 15:16:04] + export GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-06 15:16:04] + GRID_GLOBAL_JOBHOST=arc-boinc-03.cern.ch
[2025-06-06 15:16:04] ++ pwd
[2025-06-06 15:16:04] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot20/slots/0
[2025-06-06 15:16:04] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-06 15:16:04] ++ pwd
[2025-06-06 15:16:04] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot20/slots/0/log.44871837._063180.job.log.1
[2025-06-06 15:16:04] ++ pwd
[2025-06-06 15:16:04] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot20/slots/0/log.44871837._063180.job.log.1
[2025-06-06 15:16:04] ++ pwd
[2025-06-06 15:16:04] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0.diag
[2025-06-06 15:16:04] + '[' '!' -z '' ']'
[2025-06-06 15:16:04] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-06 15:16:04] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-06 15:16:04] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-06 15:16:04] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-06 15:16:04] + '[' '!' -z '' ']'
[2025-06-06 15:16:04] + '[' -z yes ']'
[2025-06-06 15:16:04] ++ pwd
[2025-06-06 15:16:04] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-06 15:16:04] + runtimeenvironments=
[2025-06-06 15:16:04] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 15:16:04] + RTE_function_0 1
[2025-06-06 15:16:04] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:16:04] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:16:04] + export BOINC_APP=ATLAS
[2025-06-06 15:16:04] + BOINC_APP=ATLAS
[2025-06-06 15:16:04] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:16:04] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:16:04] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:16:04] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:16:04] + '[' -z 1 ']'
[2025-06-06 15:16:04] + '[' 1 == 1 ']'
[2025-06-06 15:16:04] + shift
[2025-06-06 15:16:04] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 15:16:04] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 15:16:04] + '[' 0 -ne 0 ']'
[2025-06-06 15:16:04] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-06 15:16:04] + '[' -f /etc/os-release ']'
[2025-06-06 15:16:04] +++ cat /etc/os-release
[2025-06-06 15:16:04] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-06 15:16:04] +++ NAME='CentOS Linux'
[2025-06-06 15:16:04] +++ VERSION='7 (Core)'
[2025-06-06 15:16:04] +++ ID=centos
[2025-06-06 15:16:04] +++ ID_LIKE='rhel fedora'
[2025-06-06 15:16:04] +++ VERSION_ID=7
[2025-06-06 15:16:04] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-06 15:16:04] +++ ANSI_COLOR='0;31'
[2025-06-06 15:16:04] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-06 15:16:04] +++ HOME_URL=https://www.centos.org/
[2025-06-06 15:16:04] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-06 15:16:04] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-06 15:16:04] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-06 15:16:04] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-06 15:16:04] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-06 15:16:04] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-06 15:16:04] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-06 15:16:04] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-06 15:16:04] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-06 15:16:04] + HOME=/scratch/boinc/var/slot20/slots/0
[2025-06-06 15:16:04] + export HOME
[2025-06-06 15:16:04] + cd /scratch/boinc/var/slot20/slots/0
[2025-06-06 15:16:04] + '[' '!' -z '' ']'
[2025-06-06 15:16:04] + '[' -z '' ']'
[2025-06-06 15:16:04] ++ /bin/hostname -f
[2025-06-06 15:16:04] + nodename=skurut14.grid.cesnet.cz
[2025-06-06 15:16:04] + echo nodename=skurut14.grid.cesnet.cz
[2025-06-06 15:16:04] + echo Processors=2
[2025-06-06 15:16:04] + echo Nodecount=1
[2025-06-06 15:16:04] + echo Benchmark=HEPSPEC:1.0
[2025-06-06 15:16:04] + executable=./runpilot2-wrapper.sh
[2025-06-06 15:16:04] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-06 15:16:04] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-06 15:16:04] ++ head -n 1
[2025-06-06 15:16:04] ++ tr -d '\0'
[2025-06-06 15:16:04] + line1='#!/bin/bash'
[2025-06-06 15:16:04] ++ echo '#!/bin/bash'
[2025-06-06 15:16:04] ++ sed -n 's/^#! *//p'
[2025-06-06 15:16:04] + shebang=/bin/bash
[2025-06-06 15:16:04] ++ echo /bin/bash
[2025-06-06 15:16:04] ++ awk '{print $1}'
[2025-06-06 15:16:04] + interpreter=/bin/bash
[2025-06-06 15:16:04] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-06 15:16:04] + '[' x/bin/bash = x ']'
[2025-06-06 15:16:04] + type /bin/bash
[2025-06-06 15:16:04] + '[' xgnutime = xgnutime ']'
[2025-06-06 15:16:04] + /usr/bin/time -o /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-06 15:16:04] + RESULT=2
[2025-06-06 15:16:04] + sed -i -e /nodename=/d /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-06 15:16:04] ++ grep domain_name init_data.xml
[2025-06-06 15:16:04] ++ awk -F '>' '{print $2}'
[2025-06-06 15:16:04] ++ sed -e 's# #_#g'
[2025-06-06 15:16:04] ++ awk -F '<' '{print $1}'
[2025-06-06 15:16:04] + hostname=skurut14.grid.cesnet.cz
[2025-06-06 15:16:04] ++ grep user_name init_data.xml
[2025-06-06 15:16:04] ++ awk -F '>' '{print $2}'
[2025-06-06 15:16:04] ++ awk -F '<' '{print $1}'
[2025-06-06 15:16:04] ++ sed -e 's# #_#g'
[2025-06-06 15:16:04] + username=praguelcg2
[2025-06-06 15:16:04] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-06 15:16:04] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-06 15:16:04] + '[' -n 4 ']'
[2025-06-06 15:16:04] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot20/slots/0/RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag
[2025-06-06 15:16:04] + echo exitcode=2
[2025-06-06 15:16:04] + runtimeenvironments=
[2025-06-06 15:16:04] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 15:16:04] + RTE_function_0 2
[2025-06-06 15:16:04] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:16:04] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:16:04] + export BOINC_APP=ATLAS
[2025-06-06 15:16:04] + BOINC_APP=ATLAS
[2025-06-06 15:16:04] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:16:04] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:16:04] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:16:04] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:16:04] + '[' -z 2 ']'
[2025-06-06 15:16:04] + '[' 2 == 1 ']'
[2025-06-06 15:16:04] + '[' 0 -ne 0 ']'
[2025-06-06 15:16:04] + echo 'zip all output files'
[2025-06-06 15:16:04] + flist='*.diag '
[2025-06-06 15:16:04] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-06 15:16:04] + '[' -e ./heartbeat.json ']'
[2025-06-06 15:16:04] + flist='*.diag  ./heartbeat.json'
[2025-06-06 15:16:04] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-06 15:16:04] + '[' -e ./output.list ']'
[2025-06-06 15:16:04] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-06 15:16:04] + '[' -e ./log.44871837._063180.job.log.1 ']'
[2025-06-06 15:16:04] + flist='*.diag  ./heartbeat.json ./log.44871837._063180.job.log.1'
[2025-06-06 15:16:04] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-06 15:16:04] + '[' -e ./log.44871837._063180.job.log.1 ']'
[2025-06-06 15:16:04] + flist='*.diag  ./heartbeat.json ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1'
[2025-06-06 15:16:04] + for f in ./heartbeat.json ./output.list ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1 ./gmlog/
[2025-06-06 15:16:04] + '[' -e ./gmlog/ ']'
[2025-06-06 15:16:04] + '[' -f output.list ']'
[2025-06-06 15:16:04] + tar cvf result.tar.gz RiUNDmsi2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcQRKDmEOQh1m.diag ./heartbeat.json ./log.44871837._063180.job.log.1 ./log.44871837._063180.job.log.1
[2025-06-06 15:16:04] + '[' xgnutime = xcgroup ']'
[2025-06-06 15:16:04] + '[' -n '' ']'
[2025-06-06 15:16:04] + '[' -n '' ']'
[2025-06-06 15:16:04] ++ date +%s
[2025-06-06 15:16:04] + ACCOUNTING_ENDTIME=1749215764
[2025-06-06 15:16:04] ++ date -d '1970-01-01 UTC 1749215577 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 15:16:04] + echo LRMSStartTime=20250606151257Z
[2025-06-06 15:16:04] ++ date -d '1970-01-01 UTC 1749215764 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 15:16:04] + echo LRMSEndTime=20250606151604Z
[2025-06-06 15:16:04] + echo walltime=187
[2025-06-06 15:16:04] + echo exitcode=2
[2025-06-06 15:16:04] + exit 2
[2025-06-06 15:16:04] ./log.44871837._063180.job.log.1
[2025-06-06 15:16:04] ./pilotlog.txt
[2025-06-06 15:16:04] ./runtime_log.err
[2025-06-06 15:16:04] ./PanDA_Pilot-6666805706/prmon.log
[2025-06-06 15:16:04] ./PanDA_Pilot-6666805706/pilotlog.txt
[2025-06-06 15:16:04] ./PanDA_Pilot-6666805706/PoolFileCatalog.xml
[2025-06-06 15:16:04] ./PanDA_Pilot-6666805706/log.EVNTtoHITS
[2025-06-06 15:16:04] ./runtime_log
[2025-06-06 15:16:04] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-06 15:16:04] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-06 15:16:04] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-06 15:16:04] ./pilot3/pilot/util/loggingsupport.py
[2025-06-06 15:16:0

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