Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:57:21 (903): wrapper (7.7.26015): starting
00:57:21 (903): wrapper: running run_atlas (--nthreads 8)
[2025-05-28 00:57:21] Arguments: --nthreads 8
[2025-05-28 00:57:21] Threads: 8
[2025-05-28 00:57:21] Checking for CVMFS
[2025-05-28 00:57:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 00:57:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 00:57:22] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 00:57:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 00:57:23] 2.11.2.0 18542 22305 89708 146497 1 59 20909537 25165825 4246 130560 0 11867186 99.788 13554560 1922 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-28 00:57:23] CVMFS is ok
[2025-05-28 00:57:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 00:57:23] Checking for apptainer binary...
[2025-05-28 00:57:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 00:57:23] Running /usr/bin/apptainer --version
[2025-05-28 00:57:23] apptainer version 1.3.2-1.el7
[2025-05-28 00:57:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 01:27:48] cg-vwn438.simple-grid.lan
[2025-05-28 01:27:48] apptainer works
[2025-05-28 01:27:48] Set ATHENA_PROC_NUMBER=8
[2025-05-28 01:27:48] Set ATHENA_CORE_NUMBER=8
[2025-05-28 01:27:48] Starting ATLAS job with PandaID=6666805635
[2025-05-28 01:27:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 07:01:50]  *** The last 200 lines of the pilot log: ***
[2025-05-28 07:01:50] 2025-05-28 04:58:58,837 | INFO     | extracted standard info from prmon json
[2025-05-28 07:01:50] 2025-05-28 04:58:58,837 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 07:01:50] 2025-05-28 04:58:58,838 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 07:01:50] 2025-05-28 04:58:58,838 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 07:01:50] 2025-05-28 04:58:58,838 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 07:01:50] 2025-05-28 04:58:58,845 | INFO     | fitting pss+swap vs Time
[2025-05-28 07:01:50] 2025-05-28 04:58:58,846 | INFO     | sum of square deviations: 9691828230.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,850 | INFO     | sum of deviations: 70970383937.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,850 | INFO     | mean x: 1748398729.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,850 | INFO     | mean y: 2469734.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,850 | INFO     | -- intersect: -12800535656.459011
[2025-05-28 07:01:50] 2025-05-28 04:58:58,850 | INFO     | intersect: -12800535656.459011
[2025-05-28 07:01:50] 2025-05-28 04:58:58,851 | INFO     | chi2: 5.821477936821095
[2025-05-28 07:01:50] 2025-05-28 04:58:58,851 | INFO     | sum of square deviations: 9237596457.5
[2025-05-28 07:01:50] 2025-05-28 04:58:58,855 | INFO     | sum of deviations: 90663426449.50002
[2025-05-28 07:01:50] 2025-05-28 04:58:58,855 | INFO     | mean x: 1748398576.5
[2025-05-28 07:01:50] 2025-05-28 04:58:58,855 | INFO     | mean y: 2476255.3903225805
[2025-05-28 07:01:50] 2025-05-28 04:58:58,855 | INFO     | -- intersect: -17157377660.529482
[2025-05-28 07:01:50] 2025-05-28 04:58:58,855 | INFO     | intersect: -17157377660.529482
[2025-05-28 07:01:50] 2025-05-28 04:58:58,856 | INFO     | chi2: 5.08637614977894
[2025-05-28 07:01:50] 2025-05-28 04:58:58,856 | INFO     | current chi2=5.08637614977894 (change=12.627408280509064 %)
[2025-05-28 07:01:50] 2025-05-28 04:58:58,856 | INFO     | right removable region: 309
[2025-05-28 07:01:50] 2025-05-28 04:58:58,856 | INFO     | sum of square deviations: 9237596457.5
[2025-05-28 07:01:50] 2025-05-28 04:58:58,860 | INFO     | sum of deviations: -34276522383.000008
[2025-05-28 07:01:50] 2025-05-28 04:58:58,860 | INFO     | mean x: 1748398881.5
[2025-05-28 07:01:50] 2025-05-28 04:58:58,860 | INFO     | mean y: 2505030.8645161293
[2025-05-28 07:01:50] 2025-05-28 04:58:58,860 | INFO     | -- intersect: 6490018711.708474
[2025-05-28 07:01:50] 2025-05-28 04:58:58,860 | INFO     | intersect: 6490018711.708474
[2025-05-28 07:01:50] 2025-05-28 04:58:58,861 | INFO     | chi2: 1.5535309157169008
[2025-05-28 07:01:50] 2025-05-28 04:58:58,861 | INFO     | current chi2=1.5535309157169008 (change=73.31380565937128 %)
[2025-05-28 07:01:50] 2025-05-28 04:58:58,862 | INFO     | sum of square deviations: 8797783560.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,865 | INFO     | sum of deviations: -64996463800.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,865 | INFO     | mean x: 1748399034.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,865 | INFO     | mean y: 2515609.668852459
[2025-05-28 07:01:50] 2025-05-28 04:58:58,865 | INFO     | -- intersect: 12919377424.502583
[2025-05-28 07:01:50] 2025-05-28 04:58:58,866 | INFO     | intersect: 12919377424.502583
[2025-05-28 07:01:50] 2025-05-28 04:58:58,866 | INFO     | chi2: 0.9712505291692202
[2025-05-28 07:01:50] 2025-05-28 04:58:58,866 | INFO     | current chi2=0.9712505291692202 (change=37.48109423873154 %)
[2025-05-28 07:01:50] 2025-05-28 04:58:58,867 | INFO     | sum of square deviations: 8372156975.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,870 | INFO     | sum of deviations: -58836734430.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,870 | INFO     | mean x: 1748399186.5
[2025-05-28 07:01:50] 2025-05-28 04:58:58,870 | INFO     | mean y: 2513388.7733333334
[2025-05-28 07:01:50] 2025-05-28 04:58:58,870 | INFO     | -- intersect: 12289681309.884672
[2025-05-28 07:01:50] 2025-05-28 04:58:58,870 | INFO     | intersect: 12289681309.884672
[2025-05-28 07:01:50] 2025-05-28 04:58:58,871 | INFO     | chi2: 0.9569217278896753
[2025-05-28 07:01:50] 2025-05-28 04:58:58,871 | INFO     | current chi2=0.9569217278896753 (change=1.4752940512476507 %)
[2025-05-28 07:01:50] 2025-05-28 04:58:58,871 | INFO     | left removable region: 30
[2025-05-28 07:01:50] 2025-05-28 04:58:58,871 | INFO     | sum of square deviations: 6734191380.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,874 | INFO     | sum of deviations: -6530661525.000001
[2025-05-28 07:01:50] 2025-05-28 04:58:58,874 | INFO     | mean x: 1748399461.0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,875 | INFO     | mean y: 2508446.308243728
[2025-05-28 07:01:50] 2025-05-28 04:58:58,875 | INFO     | -- intersect: 1698065410.1620746
[2025-05-28 07:01:50] 2025-05-28 04:58:58,875 | INFO     | intersect: 1698065410.1620746
[2025-05-28 07:01:50] 2025-05-28 04:58:58,875 | INFO     | chi2: 0.06814546332259333
[2025-05-28 07:01:50] 2025-05-28 04:58:58,875 | INFO     | -- intersect: 1698065410.1620746
[2025-05-28 07:01:50] 2025-05-28 04:58:58,876 | INFO     | current memory leak: -0.97 B/s (using 279 data points, chi2=0.07)
[2025-05-28 07:01:50] 2025-05-28 04:58:58,876 | INFO     | ..............................
[2025-05-28 07:01:50] 2025-05-28 04:58:58,877 | INFO     | . Timing measurements:
[2025-05-28 07:01:50] 2025-05-28 04:58:58,877 | INFO     | . get job = 0 s
[2025-05-28 07:01:50] 2025-05-28 04:58:58,877 | INFO     | . initial setup = 10 s
[2025-05-28 07:01:50] 2025-05-28 04:58:58,877 | INFO     | . payload setup = 146 s
[2025-05-28 07:01:50] 2025-05-28 04:58:58,877 | INFO     | . stage-in = 0 s
[2025-05-28 07:01:50] 2025-05-28 04:58:58,877 | INFO     | . payload execution = 19312 s
[2025-05-28 07:01:50] 2025-05-28 04:58:58,877 | INFO     | . stage-out = 2 s
[2025-05-28 07:01:50] 2025-05-28 04:58:58,877 | INFO     | . log creation = 0 s
[2025-05-28 07:01:50] 2025-05-28 04:58:58,877 | INFO     | ..............................
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | 
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | job summary report
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | --------------------------------------------------
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | PanDA job id: 6666805635
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | task id: 44871837
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | errors: (none)
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | pilot state: finished 
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | transexitcode: 0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,995 | INFO     | exeerrorcode: 0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | exeerrordiag: 
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | exitcode: 0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | exitmsg: OK
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | cpuconsumptiontime: 73627 s
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | nevents: 400
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | neventsw: 0
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | pid: 2100
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | pgrp: 2100
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | corecount: 8
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | event service: False
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | sizes: {0: 2404956, 1: 2405211, 12: 2405211, 23: 2405239, 34: 2405267, 44: 2405295, 55: 2405451, 66: 2405479, 77: 2405507, 80: 2405769, 87: 2405797, 19463: 2437895
[2025-05-28 07:01:50] 2025-05-28 04:58:58,996 | INFO     | --------------------------------------------------
[2025-05-28 07:01:50] 2025-05-28 04:58:58,997 | INFO     | 
[2025-05-28 07:01:50] 2025-05-28 04:58:58,997 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-05-28 07:01:50] 2025-05-28 04:58:59,040 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,041 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,041 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,041 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,041 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,041 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,042 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,043 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 07:01:50] 2025-05-28 04:58:59,043 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,043 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 07:01:50] 2025-05-28 04:58:59,043 | INFO     | job 6666805635 has completed (purged errors)
[2025-05-28 07:01:50] 2025-05-28 04:58:59,043 | INFO     | overall cleanup function is called
[2025-05-28 07:01:50] 2025-05-28 04:59:00,051 | INFO     | --- collectZombieJob: --- 10, [2100]
[2025-05-28 07:01:50] 2025-05-28 04:59:00,051 | INFO     | zombie collector waiting for pid 2100
[2025-05-28 07:01:50] 2025-05-28 04:59:00,051 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 07:01:50] 2025-05-28 04:59:00,051 | INFO     | collected zombie processes
[2025-05-28 07:01:50] 2025-05-28 04:59:00,052 | INFO     | will attempt to kill all subprocesses of pid=2100
[2025-05-28 07:01:50] 2025-05-28 04:59:00,161 | INFO     | process IDs to be killed: [2100] (in reverse order)
[2025-05-28 07:01:50] 2025-05-28 04:59:00,564 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 07:01:50] 2025-05-28 04:59:00,564 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 07:01:50] 2025-05-28 04:59:00,578 | INFO     | did not find any defunct processes belonging to 2100
[2025-05-28 07:01:50] 2025-05-28 04:59:00,581 | INFO     | did not find any defunct processes belonging to 2100
[2025-05-28 07:01:50] 2025-05-28 04:59:00,582 | INFO     | ready for new job
[2025-05-28 07:01:50] 2025-05-28 04:59:00,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 07:01:50] 2025-05-28 04:59:00,584 | INFO     | **************************************
[2025-05-28 07:01:50] 2025-05-28 04:59:00,584 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 07:01:50] 2025-05-28 04:59:00,584 | INFO     | **************************************
[2025-05-28 07:01:50] 2025-05-28 04:59:00,584 | INFO     | 
[2025-05-28 07:01:50] 2025-05-28 04:59:00,585 | INFO     | pilot is running in a VM
[2025-05-28 07:01:50] 2025-05-28 04:59:00,585 | INFO     | architecture information:
[2025-05-28 07:01:50] 2025-05-28 04:59:00,596 | INFO     | executing command: cat /etc/os-release
[2025-05-28 07:01:50] 2025-05-28 04:59:00,751 | INFO     | cat /etc/os-release:
[2025-05-28 07:01:50] NAME="CentOS Linux"
[2025-05-28 07:01:50] VERSION="7 (Core)"
[2025-05-28 07:01:50] ID="centos"
[2025-05-28 07:01:50] ID_LIKE="rhel fedora"
[2025-05-28 07:01:50] VERSION_ID="7"
[2025-05-28 07:01:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 07:01:50] ANSI_COLOR="0;31"
[2025-05-28 07:01:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 07:01:50] HOME_URL="https://www.centos.org/"
[2025-05-28 07:01:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 07:01:50] 
[2025-05-28 07:01:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 07:01:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 07:01:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 07:01:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 07:01:50] 
[2025-05-28 07:01:50] 2025-05-28 04:59:00,752 | INFO     | **************************************
[2025-05-28 07:01:50] 2025-05-28 04:59:01,254 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-05-28 07:01:50] 2025-05-28 04:59:01,325 | INFO     | sufficient remaining disk space (495668166656 B)
[2025-05-28 07:01:50] 2025-05-28 04:59:01,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 07:01:50] 2025-05-28 04:59:01,325 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 07:01:50] 2025-05-28 04:59:01,325 | INFO     | update_server=False
[2025-05-28 07:01:50] 2025-05-28 04:59:01,325 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 07:01:50] 2025-05-28 04:59:01,326 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 07:01:50] 2025-05-28 04:59:01,326 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 07:01:50] 2025-05-28 04:59:01,329 | INFO     | aborting loop
[2025-05-28 07:01:50] 2025-05-28 04:59:01,326 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 07:01:50] 2025-05-28 04:59:01,330 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 07:01:50] 2025-05-28 04:59:01,330 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 07:01:50] 2025-05-28 04:59:01,330 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 07:01:50] 2025-05-28 04:59:01,842 | INFO     | all data control threads have been joined
[2025-05-28 07:01:50] 2025-05-28 04:59:02,332 | INFO     | [job] retrieve thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:02,337 | INFO     | [job] job monitor thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:02,418 | INFO     | [payload] failed_post thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:02,472 | INFO     | all job control threads have been joined
[2025-05-28 07:01:50] 2025-05-28 04:59:02,627 | INFO     | all payload control threads have been joined
[2025-05-28 07:01:50] 2025-05-28 04:59:02,651 | INFO     | [job] validate thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:02,786 | INFO     | [payload] validate_post thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:02,848 | INFO     | [data] control thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:03,019 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:03,040 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:03,319 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:03,335 | INFO     | [data] copytool_out thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:03,478 | INFO     | [job] control thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:03,492 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 07:01:50] 2025-05-28 04:59:03,633 | INFO     | [payload] control thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:03,729 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:03,834 | INFO     | [data] copytool_in thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:04,011 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 07:01:50] 2025-05-28 04:59:05,016 | INFO     | [job] queue monitor thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:07,500 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 07:01:50] 2025-05-28 04:59:08,419 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140396679415616)>', '<ExcThread(monitor, started 140396088776448)>']
[2025-05-28 07:01:50] 2025-05-28 04:59:09,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 07:01:50] 2025-05-28 04:59:09,381 | INFO     | [monitor] control thread has ended
[2025-05-28 07:01:50] 2025-05-28 04:59:13,445 | INFO     | all workflow threads have been joined
[2025-05-28 07:01:50] 2025-05-28 04:59:13,445 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 07:01:50] 2025-05-28 04:59:13,446 | INFO     | traces error code: 0
[2025-05-28 07:01:50] 2025-05-28 04:59:13,446 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 07:01:50] 2025-05-28 04:59:13,652 [wrapper] ==== pilot stdout END ====
[2025-05-28 07:01:50] 2025-05-28 04:59:13,695 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 07:01:50] 2025-05-28 04:59:13,809 [wrapper] pilotpid: 23929
[2025-05-28 07:01:50] 2025-05-28 04:59:13,866 [wrapper] Pilot exit status: 0
[2025-05-28 07:01:50] 2025-05-28 04:59:14,044 [wrapper] pandaids: 6666805635
[2025-05-28 07:01:50] 2025-05-28 04:59:14,204 [wrapper] cleanup supervisor_pilot  4806 23930
[2025-05-28 07:01:50] 2025-05-28 04:59:14,230 [wrapper] Test setup, not cleaning
[2025-05-28 07:01:50] 2025-05-28 04:59:14,281 [wrapper] apfmon messages muted
[2025-05-28 07:01:50] 2025-05-28 04:59:14,387 [wrapper] ==== wrapper stdout END ====
[2025-05-28 07:01:50] 2025-05-28 04:59:14,565 [wrapper] ==== wrapper stderr END ====
[2025-05-28 07:01:50]  *** Error codes and diagnostics ***
[2025-05-28 07:01:51]     "exeErrorCode": 0,
[2025-05-28 07:01:51]     "exeErrorDiag": "",
[2025-05-28 07:01:51]     "pilotErrorCode": 0,
[2025-05-28 07:01:51]     "pilotErrorDiag": "",
[2025-05-28 07:01:51]  *** Listing of results directory ***
[2025-05-28 07:01:51] total 417916
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc    495897 May 27 07:18 pilot3.tar.gz
[2025-05-28 07:01:51] -rwx------. 1 boinc boinc     37140 May 27 08:01 runpilot2-wrapper.sh
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc      5111 May 27 08:02 queuedata.json
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc       100 May 28 00:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 07:01:51] -rwxr-xr-x. 1 boinc boinc      7986 May 28 00:57 run_atlas
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc       105 May 28 00:57 job.xml
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc      6372 May 28 00:57 init_data.xml
[2025-05-28 07:01:51] -rw-r--r--. 2 boinc boinc 222386214 May 28 00:57 EVNT.44871834._002488.pool.root.1
[2025-05-28 07:01:51] -rw-r--r--. 2 boinc boinc     15093 May 28 00:57 start_atlas.sh
[2025-05-28 07:01:51] drwxrwx--x. 2 boinc boinc        68 May 28 00:57 shared
[2025-05-28 07:01:51] -rw-r--r--. 2 boinc boinc    508877 May 28 00:57 input.tar.gz
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc         0 May 28 00:57 boinc_lockfile
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc      2558 May 28 01:27 pandaJob.out
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc    991177 May 28 01:31 agis_schedconf.cvmfs.json
[2025-05-28 07:01:51] drwx------. 4 boinc boinc      4096 May 28 01:31 pilot3
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc 197537746 May 28 06:57 HITS.44871837._063109.pool.root.1
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc       531 May 28 06:57 boinc_task_state.xml
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc        95 May 28 06:58 pilot_heartbeat.json
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc      1019 May 28 06:58 memory_monitor_summary.json
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc   1603667 May 28 06:58 agis_ddmendpoints.agis.ALL.json
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc    446149 May 28 06:58 log.44871837._063109.job.log.tgz.1
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc      7693 May 28 06:58 heartbeat.json
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc      4539 May 28 06:59 pilotlog.txt
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc   1652973 May 28 06:59 log.44871837._063109.job.log.1
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc       357 May 28 06:59 output.list
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc       620 May 28 06:59 runtime_log
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc   2119680 May 28 06:59 result.tar.gz
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc      8659 May 28 06:59 runtime_log.err
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc       657 May 28 06:59 LZqLDm1Y2d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmSPRKDmWwAvfn.diag
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc      8192 May 28 07:01 boinc_mmap_file
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc        28 May 28 07:01 wrapper_checkpoint.txt
[2025-05-28 07:01:51] -rw-r--r--. 1 boinc boinc     20493 May 28 07:01 stderr.txt
[2025-05-28 07:01:51] HITS file was successfully produced:
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc 197537746 May 28 06:57 shared/HITS.pool.root.1
[2025-05-28 07:01:51]  *** Contents of shared directory: ***
[2025-05-28 07:01:51] total 412672
[2025-05-28 07:01:51] -rw-r--r--. 2 boinc boinc 222386214 May 28 00:57 ATLAS.root_0
[2025-05-28 07:01:51] -rw-r--r--. 2 boinc boinc     15093 May 28 00:57 start_atlas.sh
[2025-05-28 07:01:51] -rw-r--r--. 2 boinc boinc    508877 May 28 00:57 input.tar.gz
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc 197537746 May 28 06:57 HITS.pool.root.1
[2025-05-28 07:01:51] -rw-------. 1 boinc boinc   2119680 May 28 06:59 result.tar.gz
07:01:52 (903): run_atlas exited; CPU time 73902.433043
07:01:52 (903): called boinc_finish(0)

</stderr_txt>
]]>

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