Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-27 15:32:03 (4018000): Detected: vboxwrapper 26206
2025-05-27 15:32:03 (4018000): Detected: BOINC client v8.2.2
2025-05-27 15:32:04 (4018000): Detected: VirtualBox VboxManage Interface (Version: 7.0.20)
2025-05-27 15:32:04 (4018000): Successfully copied 'init_data.xml' to the shared directory.
2025-05-27 15:32:05 (4018000): Create VM. (boinc_3ac2c1f92676c7c5, slot#31)
2025-05-27 15:32:05 (4018000): Setting Memory Size for VM. (4096MB)
2025-05-27 15:32:06 (4018000): Setting CPU Count for VM. (1)
2025-05-27 15:32:06 (4018000): Setting Chipset Options for VM.
2025-05-27 15:32:06 (4018000): Setting Graphics Controller Options for VM.
2025-05-27 15:32:07 (4018000): Setting Boot Options for VM.
2025-05-27 15:32:07 (4018000): Setting Network Configuration for NAT.
2025-05-27 15:32:07 (4018000): Enabling VM Network Access.
2025-05-27 15:32:08 (4018000): Disabling USB Support for VM.
2025-05-27 15:32:08 (4018000): Disabling COM Port Support for VM.
2025-05-27 15:32:08 (4018000): Disabling LPT Port Support for VM.
2025-05-27 15:32:09 (4018000): Disabling Audio Support for VM.
2025-05-27 15:32:09 (4018000): Disabling Clipboard Support for VM.
2025-05-27 15:32:09 (4018000): Disabling Drag and Drop Support for VM.
2025-05-27 15:32:09 (4018000): Adding storage controller(s) to VM.
2025-05-27 15:32:10 (4018000): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-27 15:32:10 (4018000): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-27 15:32:11 (4018000): forwarding host port 60241 to guest port 80
2025-05-27 15:32:11 (4018000): Enabling remote desktop for VM.
2025-05-27 15:32:12 (4018000): Enabling shared directory for VM.
2025-05-27 15:32:12 (4018000): Starting VM using VBoxManage interface. (boinc_3ac2c1f92676c7c5, slot#31)
2025-05-27 15:32:14 (4018000): Successfully started VM. (PID = '4019778')
2025-05-27 15:32:14 (4018000): Reporting VM Process ID to BOINC.
2025-05-27 15:32:14 (4018000): Guest Log: BIOS: VirtualBox 7.0.20
2025-05-27 15:32:14 (4018000): Guest Log: CPUID EDX: 0x178bfbff
2025-05-27 15:32:14 (4018000): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-27 15:32:14 (4018000): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-27 15:32:14 (4018000): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-27 15:32:14 (4018000): Detected: Web Application Enabled (http://localhost:60241)
2025-05-27 15:32:14 (4018000): Detected: Remote Desktop Enabled (localhost:59733)
2025-05-27 15:32:14 (4018000): Preference change detected
2025-05-27 15:32:14 (4018000): Setting CPU throttle for VM. (100%)
2025-05-27 15:32:15 (4018000): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-27 15:32:16 (4018000): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-27 15:32:16 (4018000): Guest Log: BIOS: Booting from Hard Disk...
2025-05-27 15:32:19 (4018000): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-27 15:32:19 (4018000): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-27 15:32:19 (4018000): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-27 15:32:26 (4018000): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-27 15:32:26 (4018000): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-27 15:32:42 (4018000): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-27 15:32:42 (4018000): Guest Log: 00:00:00.000266 main     Log opened 2025-05-27T13:32:40.535349000Z
2025-05-27 15:32:42 (4018000): Guest Log: 00:00:00.000407 main     OS Product: Linux
2025-05-27 15:32:42 (4018000): Guest Log: 00:00:00.000448 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-27 15:32:42 (4018000): Guest Log: 00:00:00.000502 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-27 15:32:42 (4018000): Guest Log: 00:00:00.000537 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-27 15:32:42 (4018000): Guest Log: 00:00:00.000538 main     Process ID: 1240
2025-05-27 15:32:42 (4018000): Guest Log: 00:00:00.000539 main     Package type: LINUX_64BITS_GENERIC
2025-05-27 15:32:42 (4018000): Guest Log: 00:00:00.006012 main     5.2.32 r132073 started. Verbose level = 0
2025-05-27 15:32:42 (4018000): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-27 15:32:42 (4018000): Guest Log: [INFO] Mounting shared directory
2025-05-27 15:32:42 (4018000): Guest Log: [INFO] Checking for init_data.xml
2025-05-27 15:32:45 (4018000): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-27 15:32:45 (4018000): Guest Log: [INFO] Detected branch: prod
2025-05-27 15:32:45 (4018000): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-27 15:32:45 (4018000): Guest Log: Copying input files
2025-05-27 15:32:47 (4018000): Guest Log: Copied input files into RunAtlas.
2025-05-27 15:32:47 (4018000): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2025-05-27 15:32:55 (4018000): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-27 15:32:55 (4018000): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-27 15:32:55 (4018000): Guest Log: 2.6.3.0 1509 0 29508 146481 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2025-05-27 15:32:57 (4018000): Guest Log: copied the webapp to /var/www
2025-05-27 15:32:57 (4018000): Guest Log: core_number=1
2025-05-27 15:32:57 (4018000): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-27 15:32:57 (4018000): Guest Log:  *** Starting ATLAS job. (PandaID=6665754165 taskID=44871837) ***
2025-05-27 17:11:15 (4018000): Status Report: Elapsed Time: '6000.000000'
2025-05-27 17:11:15 (4018000): Status Report: CPU Time: '5551.660000'
2025-05-27 18:50:15 (4018000): Status Report: Elapsed Time: '12000.000000'
2025-05-27 18:50:15 (4018000): Status Report: CPU Time: '11487.020000'
2025-05-27 20:29:16 (4018000): Status Report: Elapsed Time: '18000.000000'
2025-05-27 20:29:16 (4018000): Status Report: CPU Time: '17420.720000'
2025-05-27 22:08:17 (4018000): Status Report: Elapsed Time: '24000.000000'
2025-05-27 22:08:17 (4018000): Status Report: CPU Time: '23354.790000'
2025-05-27 23:47:17 (4018000): Status Report: Elapsed Time: '30000.000000'
2025-05-27 23:47:17 (4018000): Status Report: CPU Time: '29290.560000'
2025-05-28 01:26:18 (4018000): Status Report: Elapsed Time: '36000.000000'
2025-05-28 01:26:18 (4018000): Status Report: CPU Time: '35225.190000'
2025-05-28 03:05:18 (4018000): Status Report: Elapsed Time: '42000.000000'
2025-05-28 03:05:18 (4018000): Status Report: CPU Time: '41159.160000'
2025-05-28 04:44:19 (4018000): Status Report: Elapsed Time: '48000.000000'
2025-05-28 04:44:19 (4018000): Status Report: CPU Time: '47093.430000'
2025-05-28 06:23:19 (4018000): Status Report: Elapsed Time: '54000.000000'
2025-05-28 06:23:19 (4018000): Status Report: CPU Time: '53028.710000'
2025-05-28 08:02:20 (4018000): Status Report: Elapsed Time: '60000.000000'
2025-05-28 08:02:20 (4018000): Status Report: CPU Time: '58963.480000'
2025-05-28 09:41:20 (4018000): Status Report: Elapsed Time: '66000.000000'
2025-05-28 09:41:20 (4018000): Status Report: CPU Time: '64899.150000'
2025-05-28 11:20:21 (4018000): Status Report: Elapsed Time: '72000.000000'
2025-05-28 11:20:21 (4018000): Status Report: CPU Time: '70835.100000'
2025-05-28 12:59:21 (4018000): Status Report: Elapsed Time: '78000.000000'
2025-05-28 12:59:21 (4018000): Status Report: CPU Time: '76770.280000'
2025-05-28 14:23:50 (4018000): Guest Log:  *** Job finished ***
2025-05-28 14:23:50 (4018000): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:10,257 | INFO     | [payload] failed_post thread has finished
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:10,991 | INFO     | [data] copytool_out thread has finished
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:11,729 | INFO     | [data] queue_monitor thread has finished
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:13,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140183750055744)>', '<ExcThread(monitor, started 140183093634816)>']
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:13,733 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:13,734 | INFO     | [monitor] control thread has ended
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,262 | INFO     | all workflow threads have been joined
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,262 | INFO     | end of generic workflow (traces error code: 0)
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,263 | INFO     | traces error code: 0
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,263 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,418 [wrapper] ==== pilot stdout END ====
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,424 [wrapper] ==== wrapper stdout RESUME ====
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,430 [wrapper] pilotpid: 5764
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,435 [wrapper] Pilot exit status: 0
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,465 [wrapper] pandaids: 6665754165
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,497 [wrapper] cleanup supervisor_pilot 23285 5765
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,503 [wrapper] Test setup, not cleaning
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,510 [wrapper] apfmon messages muted
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,515 [wrapper] ==== wrapper stdout END ====
2025-05-28 14:23:50 (4018000): Guest Log: 2025-05-28 12:20:18,521 [wrapper] ==== wrapper stderr END ====
2025-05-28 14:23:50 (4018000): Guest Log:  *** Error codes and diagnostics ***
2025-05-28 14:23:50 (4018000): Guest Log:     "exeErrorCode": 0,
2025-05-28 14:23:50 (4018000): Guest Log:     "exeErrorDiag": "",
2025-05-28 14:23:50 (4018000): Guest Log:     "pilotErrorCode": 0,
2025-05-28 14:23:50 (4018000): Guest Log:     "pilotErrorDiag": "",
2025-05-28 14:23:50 (4018000): Guest Log:  *** Listing of results directory ***
2025-05-28 14:23:50 (4018000): Guest Log: total 215684
2025-05-28 14:23:50 (4018000): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 26 03:39 pilot3.tar.gz
2025-05-28 14:23:50 (4018000): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 26 03:40 queuedata.json
2025-05-28 14:23:50 (4018000): Guest Log: -rwx------. 1 atlas atlas     37140 May 26 03:41 runpilot2-wrapper.sh
2025-05-28 14:23:50 (4018000): Guest Log: -rw-r--r--. 1 atlas atlas     15093 May 27 13:32 start_atlas.sh
2025-05-28 14:23:50 (4018000): Guest Log: -rw-r--r--. 1 atlas atlas      9672 May 27 13:32 init_data.xml
2025-05-28 14:23:50 (4018000): Guest Log: -rw-r--r--. 1 atlas atlas    508875 May 27 13:32 input.tar.gz
2025-05-28 14:23:50 (4018000): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 27 13:32 EVNT.44871834._001801.pool.root.1 -> /data/./ATLAS.root_0
2025-05-28 14:23:50 (4018000): Guest Log: -rw-r--r--. 1 atlas atlas      2558 May 27 13:32 pandaJob.out
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas    990967 May 27 13:33 agis_schedconf.cvmfs.json
2025-05-28 14:23:50 (4018000): Guest Log: drwx------. 4 atlas atlas      4096 May 27 13:33 pilot3
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas 201321386 May 28 12:19 HITS.44871837._045155.pool.root.1
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas      1027 May 28 12:19 memory_monitor_summary.json
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas        95 May 28 12:19 pilot_heartbeat.json
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas   1603667 May 28 12:19 agis_ddmendpoints.agis.ALL.json
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas    875227 May 28 12:19 log.44871837._045155.job.log.tgz.1
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas      7729 May 28 12:20 heartbeat.json
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas      4853 May 28 12:20 pilotlog.txt
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas   7007849 May 28 12:20 log.44871837._045155.job.log.1
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas       357 May 28 12:20 output.list
2025-05-28 14:23:50 (4018000): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 28 12:20 runtime_log
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas   7905280 May 28 12:20 result.tar.gz
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas       657 May 28 12:20 yvVKDmVtdd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8pVKDmhLRlcn.diag
2025-05-28 14:23:50 (4018000): Guest Log: -rw-r--r--. 1 atlas atlas      8472 May 28 12:20 runtime_log.err
2025-05-28 14:23:50 (4018000): Guest Log: Looking for outputfile HITS.44871837._045155.pool.root.1
2025-05-28 14:23:50 (4018000): Guest Log: HITS file was successfully produced
2025-05-28 14:23:50 (4018000): Guest Log: -rw-------. 1 atlas atlas 201321386 May 28 12:19 /home/atlas/RunAtlas/HITS.44871837._045155.pool.root.1
2025-05-28 14:23:51 (4018000): Guest Log: Successfully finished the ATLAS job!
2025-05-28 14:23:51 (4018000): Guest Log: Copying the results back to the shared directory!
2025-05-28 14:23:51 (4018000): Guest Log:  *** Contents of shared directory: ***
2025-05-28 14:23:51 (4018000): Guest Log: total 225808
2025-05-28 14:23:51 (4018000): Guest Log: -rw-r--r--. 1 root root 222776403 May 27 13:32 ATLAS.root_0
2025-05-28 14:23:51 (4018000): Guest Log: -rw-r--r--. 1 root root      9672 May 27 13:32 init_data.xml
2025-05-28 14:23:51 (4018000): Guest Log: -rw-r--r--. 1 root root    508875 May 27 13:32 input.tar.gz
2025-05-28 14:23:51 (4018000): Guest Log: -rw-r--r--. 1 root root   7905280 May 28  2025 result.tar.gz
2025-05-28 14:23:51 (4018000): Guest Log: -rw-r--r--. 1 root root     15093 May 27 13:32 start_atlas.sh
2025-05-28 14:23:51 (4018000): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-28 14:23:51 (4018000): VM Completion File Detected.
2025-05-28 14:23:51 (4018000): Powering off VM.
2025-05-28 14:23:52 (4018000): Successfully stopped VM.
2025-05-28 14:23:52 (4018000): Deregistering VM. (boinc_3ac2c1f92676c7c5, slot#31)
2025-05-28 14:23:52 (4018000): Removing network bandwidth throttle group from VM.
2025-05-28 14:23:52 (4018000): Removing VM from VirtualBox.
14:23:57 (4018000): called boinc_finish(0)

</stderr_txt>
]]>

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