Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
k
[2025-06-02 10:42:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-02 10:42:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-02 10:42:47] Further information can be found at the LHC@home message board.
[2025-06-02 10:42:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-02 10:42:47] Checking for apptainer binary...
[2025-06-02 10:42:47] which: no apptainer in ((null))
[2025-06-02 10:42:47] apptainer is not installed, using version from CVMFS
[2025-06-02 10:42:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-02 10:42:47] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-02 10:42:47] apptainer works
[2025-06-02 10:42:47] Set ATHENA_PROC_NUMBER=4
[2025-06-02 10:42:47] Set ATHENA_CORE_NUMBER=4
[2025-06-02 10:42:47] Starting ATLAS job with PandaID=6666762817
[2025-06-02 10:42:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:02:00 (2762874): wrapper (7.7.26015): starting
15:02:00 (2762874): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 15:02:00] Arguments: --nthreads 4
[2025-06-03 15:02:00] Threads: 4
[2025-06-03 15:02:00] This job has been restarted, cleaning up previous attempt
[2025-06-03 15:02:00] Checking for CVMFS
[2025-06-03 15:02:00] No cvmfs_config command found, will try listing directly
[2025-06-03 15:02:00] CVMFS is ok
[2025-06-03 15:02:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 15:02:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 15:02:00] Further information can be found at the LHC@home message board.
[2025-06-03 15:02:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 15:02:00] Checking for apptainer binary...
[2025-06-03 15:02:00] which: no apptainer in ((null))
[2025-06-03 15:02:00] apptainer is not installed, using version from CVMFS
[2025-06-03 15:02:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 15:02:00] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-03 15:02:00] apptainer works
[2025-06-03 15:02:00] Set ATHENA_PROC_NUMBER=4
[2025-06-03 15:02:00] Set ATHENA_CORE_NUMBER=4
[2025-06-03 15:02:01] Starting ATLAS job with PandaID=6666762817
[2025-06-03 15:02:01] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:43:17 (3566042): wrapper (7.7.26015): starting
22:43:17 (3566042): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 22:43:17] Arguments: --nthreads 4
[2025-06-03 22:43:17] Threads: 4
[2025-06-03 22:43:17] This job has been restarted, cleaning up previous attempt
[2025-06-03 22:43:17] Checking for CVMFS
[2025-06-03 22:43:17] No cvmfs_config command found, will try listing directly
[2025-06-03 22:43:17] CVMFS is ok
[2025-06-03 22:43:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 22:43:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 22:43:17] Further information can be found at the LHC@home message board.
[2025-06-03 22:43:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 22:43:17] Checking for apptainer binary...
[2025-06-03 22:43:17] which: no apptainer in ((null))
[2025-06-03 22:43:17] apptainer is not installed, using version from CVMFS
[2025-06-03 22:43:17] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 22:43:17] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-03 22:43:17] apptainer works
[2025-06-03 22:43:17] Set ATHENA_PROC_NUMBER=4
[2025-06-03 22:43:17] Set ATHENA_CORE_NUMBER=4
[2025-06-03 22:43:17] Starting ATLAS job with PandaID=6666762817
[2025-06-03 22:43:17] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 22:46:59] Job failed
[2025-06-03 22:46:59] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 22:46:59] ++ pwd
[2025-06-03 22:46:59] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 22:46:59] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 22:46:59] + mv ATLAS.root_0 EVNT.44871834._002441.pool.root.1
[2025-06-03 22:46:59] mv: 'ATLAS.root_0' and 'EVNT.44871834._002441.pool.root.1' are the same file
[2025-06-03 22:46:59] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 22:46:59] + umask 077
[2025-06-03 22:46:59] ++ date +%s
[2025-06-03 22:46:59] + ACCOUNTING_STARTTIME=1748983397
[2025-06-03 22:46:59] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 22:46:59] Detecting resource accounting method available for the job.
[2025-06-03 22:46:59] + JOB_ACCOUNTING=
[2025-06-03 22:46:59] + command -v arc-job-cgroup
[2025-06-03 22:46:59] + '[' -z '' ']'
[2025-06-03 22:46:59] + GNU_TIME=/usr/bin/time
[2025-06-03 22:46:59] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 22:46:59] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 22:46:59] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 22:46:59] + /usr/bin/time --version
[2025-06-03 22:46:59] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 22:46:59] GNU time found and will be used for job accounting.
[2025-06-03 22:46:59] + JOB_ACCOUNTING=gnutime
[2025-06-03 22:46:59] + '[' -z gnutime ']'
[2025-06-03 22:46:59] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 22:46:59] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 22:46:59] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666762817.out
[2025-06-03 22:46:59] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666762817.out
[2025-06-03 22:46:59] + export PILOT_NOKILL=YES
[2025-06-03 22:46:59] + PILOT_NOKILL=YES
[2025-06-03 22:46:59] + export GRID_GLOBAL_JOBID=GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-03 22:46:59] + GRID_GLOBAL_JOBID=GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-03 22:46:59] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-03 22:46:59] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-03 22:46:59] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 22:46:59] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 22:46:59] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 22:46:59] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 22:46:59] ++ pwd
[2025-06-03 22:46:59] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot20/slots/0
[2025-06-03 22:46:59] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 22:46:59] ++ pwd
[2025-06-03 22:46:59] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot20/slots/0/log.44871837._061873.job.log.1
[2025-06-03 22:46:59] ++ pwd
[2025-06-03 22:46:59] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot20/slots/0/log.44871837._061873.job.log.1
[2025-06-03 22:46:59] ++ pwd
[2025-06-03 22:46:59] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0.diag
[2025-06-03 22:46:59] + '[' '!' -z '' ']'
[2025-06-03 22:46:59] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 22:46:59] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 22:46:59] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 22:46:59] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 22:46:59] + '[' '!' -z '' ']'
[2025-06-03 22:46:59] + '[' -z yes ']'
[2025-06-03 22:46:59] ++ pwd
[2025-06-03 22:46:59] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-03 22:46:59] + runtimeenvironments=
[2025-06-03 22:46:59] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 22:46:59] + RTE_function_0 1
[2025-06-03 22:46:59] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 22:46:59] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 22:46:59] + export BOINC_APP=ATLAS
[2025-06-03 22:46:59] + BOINC_APP=ATLAS
[2025-06-03 22:46:59] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 22:46:59] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 22:46:59] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 22:46:59] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 22:46:59] + '[' -z 1 ']'
[2025-06-03 22:46:59] + '[' 1 == 1 ']'
[2025-06-03 22:46:59] + shift
[2025-06-03 22:46:59] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 22:46:59] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-03 22:46:59] + '[' 0 -ne 0 ']'
[2025-06-03 22:46:59] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 22:46:59] + '[' -f /etc/os-release ']'
[2025-06-03 22:46:59] +++ cat /etc/os-release
[2025-06-03 22:46:59] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 22:46:59] +++ NAME='CentOS Linux'
[2025-06-03 22:46:59] +++ VERSION='7 (Core)'
[2025-06-03 22:46:59] +++ ID=centos
[2025-06-03 22:46:59] +++ ID_LIKE='rhel fedora'
[2025-06-03 22:46:59] +++ VERSION_ID=7
[2025-06-03 22:46:59] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 22:46:59] +++ ANSI_COLOR='0;31'
[2025-06-03 22:46:59] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 22:46:59] +++ HOME_URL=https://www.centos.org/
[2025-06-03 22:46:59] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 22:46:59] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 22:46:59] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 22:46:59] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 22:46:59] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 22:46:59] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 22:46:59] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 22:46:59] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 22:46:59] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 22:46:59] + HOME=/scratch/boinc/var/slot20/slots/0
[2025-06-03 22:46:59] + export HOME
[2025-06-03 22:46:59] + cd /scratch/boinc/var/slot20/slots/0
[2025-06-03 22:46:59] + '[' '!' -z '' ']'
[2025-06-03 22:46:59] + '[' -z '' ']'
[2025-06-03 22:46:59] ++ /bin/hostname -f
[2025-06-03 22:46:59] + nodename=skurut05.grid.cesnet.cz
[2025-06-03 22:46:59] + echo nodename=skurut05.grid.cesnet.cz
[2025-06-03 22:46:59] + echo Processors=2
[2025-06-03 22:46:59] + echo Nodecount=1
[2025-06-03 22:46:59] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 22:46:59] + executable=./runpilot2-wrapper.sh
[2025-06-03 22:46:59] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 22:46:59] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 22:46:59] ++ head -n 1
[2025-06-03 22:46:59] ++ tr -d '\0'
[2025-06-03 22:46:59] + line1='#!/bin/bash'
[2025-06-03 22:46:59] ++ echo '#!/bin/bash'
[2025-06-03 22:46:59] ++ sed -n 's/^#! *//p'
[2025-06-03 22:46:59] + shebang=/bin/bash
[2025-06-03 22:46:59] ++ echo /bin/bash
[2025-06-03 22:46:59] ++ awk '{print $1}'
[2025-06-03 22:46:59] + interpreter=/bin/bash
[2025-06-03 22:46:59] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 22:46:59] + '[' x/bin/bash = x ']'
[2025-06-03 22:46:59] + type /bin/bash
[2025-06-03 22:46:59] + '[' xgnutime = xgnutime ']'
[2025-06-03 22:46:59] + /usr/bin/time -o /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 22:46:59] + RESULT=2
[2025-06-03 22:46:59] + sed -i -e /nodename=/d /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-03 22:46:59] ++ grep domain_name init_data.xml
[2025-06-03 22:46:59] ++ awk -F '>' '{print $2}'
[2025-06-03 22:46:59] ++ awk -F '<' '{print $1}'
[2025-06-03 22:46:59] ++ sed -e 's# #_#g'
[2025-06-03 22:46:59] + hostname=skurut05.grid.cesnet.cz
[2025-06-03 22:46:59] ++ grep user_name init_data.xml
[2025-06-03 22:46:59] ++ awk -F '>' '{print $2}'
[2025-06-03 22:46:59] ++ awk -F '<' '{print $1}'
[2025-06-03 22:46:59] ++ sed -e 's# #_#g'
[2025-06-03 22:46:59] + username=praguelcg2
[2025-06-03 22:46:59] + nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-03 22:46:59] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-03 22:46:59] + '[' -n 4 ']'
[2025-06-03 22:46:59] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-03 22:46:59] + echo exitcode=2
[2025-06-03 22:46:59] + runtimeenvironments=
[2025-06-03 22:46:59] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 22:46:59] + RTE_function_0 2
[2025-06-03 22:46:59] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 22:46:59] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 22:46:59] + export BOINC_APP=ATLAS
[2025-06-03 22:46:59] + BOINC_APP=ATLAS
[2025-06-03 22:46:59] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 22:46:59] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 22:46:59] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 22:46:59] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 22:46:59] + '[' -z 2 ']'
[2025-06-03 22:46:59] + '[' 2 == 1 ']'
[2025-06-03 22:46:59] + '[' 0 -ne 0 ']'
[2025-06-03 22:46:59] + echo 'zip all output files'
[2025-06-03 22:46:59] + flist='*.diag '
[2025-06-03 22:46:59] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-03 22:46:59] + '[' -e ./heartbeat.json ']'
[2025-06-03 22:46:59] + flist='*.diag  ./heartbeat.json'
[2025-06-03 22:46:59] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-03 22:46:59] + '[' -e ./output.list ']'
[2025-06-03 22:46:59] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-03 22:46:59] + '[' -e ./log.44871837._061873.job.log.1 ']'
[2025-06-03 22:46:59] + flist='*.diag  ./heartbeat.json ./log.44871837._061873.job.log.1'
[2025-06-03 22:46:59] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-03 22:46:59] + '[' -e ./log.44871837._061873.job.log.1 ']'
[2025-06-03 22:46:59] + flist='*.diag  ./heartbeat.json ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1'
[2025-06-03 22:46:59] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-03 22:46:59] + '[' -e ./gmlog/ ']'
[2025-06-03 22:46:59] + '[' -f output.list ']'
[2025-06-03 22:46:59] + tar cvf result.tar.gz GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag ./heartbeat.json ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1
[2025-06-03 22:46:59] + '[' xgnutime = xcgroup ']'
[2025-06-03 22:46:59] + '[' -n '' ']'
[2025-06-03 22:46:59] + '[' -n '' ']'
[2025-06-03 22:46:59] ++ date +%s
[2025-06-03 22:46:59] + ACCOUNTING_ENDTIME=1748983584
[2025-06-03 22:46:59] ++ date -d '1970-01-01 UTC 1748983397 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 22:46:59] + echo LRMSStartTime=20250603224317Z
[2025-06-03 22:46:59] ++ date -d '1970-01-01 UTC 1748983584 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 22:46:59] + echo LRMSEndTime=20250603224624Z
[2025-06-03 22:46:59] + echo walltime=187
[2025-06-03 22:46:59] + echo exitcode=2
[2025-06-03 22:46:59] + exit 2
[2025-06-03 22:46:59] ./pilotlog.txt
[2025-06-03 22:46:59] ./PanDA_Pilot-6666762817/pilotlog.txt
[2025-06-03 22:46:59] ./PanDA_Pilot-6666762817/prmon.log
[2025-06-03 22:46:59] ./PanDA_Pilot-6666762817/log.EVNTtoHITS
[2025-06-03 22:46:59] ./PanDA_Pilot-6666762817/PoolFileCatalog.xml
[2025-06-03 22:46:59] ./log.44871837._061873.job.log.1
[2025-06-03 22:46:59] ./runtime_log.err
[2025-06-03 22:46:59] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 22:46:59] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 22:46:59] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 22:46:59] ./pilot3/pilot/util/realtimelogger.py
[2025-06-03 22:46:59] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 22:46:59] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 22:46:59] ./runtime_log
03:27:13 (2516294): wrapper (7.7.26015): starting
03:27:13 (2516294): wrapper: running run_atlas (--nthreads 4)
[2025-06-05 03:27:13] Arguments: --nthreads 4
[2025-06-05 03:27:13] Threads: 4
[2025-06-05 03:27:13] This job has been restarted, cleaning up previous attempt
[2025-06-05 03:27:13] Checking for CVMFS
[2025-06-05 03:27:13] No cvmfs_config command found, will try listing directly
[2025-06-05 03:27:13] CVMFS is ok
[2025-06-05 03:27:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-05 03:27:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-05 03:27:13] Further information can be found at the LHC@home message board.
[2025-06-05 03:27:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-05 03:27:13] Checking for apptainer binary...
[2025-06-05 03:27:13] which: no apptainer in ((null))
[2025-06-05 03:27:13] apptainer is not installed, using version from CVMFS
[2025-06-05 03:27:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-05 03:27:13] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-05 03:27:13] apptainer works
[2025-06-05 03:27:13] Set ATHENA_PROC_NUMBER=4
[2025-06-05 03:27:13] Set ATHENA_CORE_NUMBER=4
[2025-06-05 03:27:13] Starting ATLAS job with PandaID=6666762817
[2025-06-05 03:27:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-05 03:31:34] Job failed
[2025-06-05 03:31:34] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-05 03:31:34] ++ pwd
[2025-06-05 03:31:34] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-05 03:31:34] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-05 03:31:34] + mv ATLAS.root_0 EVNT.44871834._002441.pool.root.1
[2025-06-05 03:31:34] mv: 'ATLAS.root_0' and 'EVNT.44871834._002441.pool.root.1' are the same file
[2025-06-05 03:31:34] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-05 03:31:34] + umask 077
[2025-06-05 03:31:34] ++ date +%s
[2025-06-05 03:31:34] + ACCOUNTING_STARTTIME=1749086833
[2025-06-05 03:31:34] + echo 'Detecting resource accounting method available for the job.'
[2025-06-05 03:31:34] Detecting resource accounting method available for the job.
[2025-06-05 03:31:34] + JOB_ACCOUNTING=
[2025-06-05 03:31:34] + command -v arc-job-cgroup
[2025-06-05 03:31:34] + '[' -z '' ']'
[2025-06-05 03:31:34] + GNU_TIME=/usr/bin/time
[2025-06-05 03:31:34] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-05 03:31:34] Looking for /usr/bin/time tool for accounting measurements
[2025-06-05 03:31:34] + '[' '!' -z /usr/bin/time ']'
[2025-06-05 03:31:34] + /usr/bin/time --version
[2025-06-05 03:31:34] + echo 'GNU time found and will be used for job accounting.'
[2025-06-05 03:31:34] GNU time found and will be used for job accounting.
[2025-06-05 03:31:34] + JOB_ACCOUNTING=gnutime
[2025-06-05 03:31:34] + '[' -z gnutime ']'
[2025-06-05 03:31:34] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-05 03:31:34] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-05 03:31:34] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666762817.out
[2025-06-05 03:31:34] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666762817.out
[2025-06-05 03:31:34] + export PILOT_NOKILL=YES
[2025-06-05 03:31:34] + PILOT_NOKILL=YES
[2025-06-05 03:31:34] + export GRID_GLOBAL_JOBID=GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-05 03:31:34] + GRID_GLOBAL_JOBID=GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-05 03:31:34] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-05 03:31:34] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-05 03:31:34] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-05 03:31:34] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-05 03:31:34] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-05 03:31:34] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-05 03:31:34] ++ pwd
[2025-06-05 03:31:34] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot20/slots/0
[2025-06-05 03:31:34] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-05 03:31:34] ++ pwd
[2025-06-05 03:31:34] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot20/slots/0/log.44871837._061873.job.log.1
[2025-06-05 03:31:34] ++ pwd
[2025-06-05 03:31:34] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot20/slots/0/log.44871837._061873.job.log.1
[2025-06-05 03:31:34] ++ pwd
[2025-06-05 03:31:34] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0.diag
[2025-06-05 03:31:34] + '[' '!' -z '' ']'
[2025-06-05 03:31:34] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-05 03:31:34] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-05 03:31:34] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-05 03:31:34] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-05 03:31:34] + '[' '!' -z '' ']'
[2025-06-05 03:31:34] + '[' -z yes ']'
[2025-06-05 03:31:34] ++ pwd
[2025-06-05 03:31:34] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-05 03:31:34] + runtimeenvironments=
[2025-06-05 03:31:34] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-05 03:31:34] + RTE_function_0 1
[2025-06-05 03:31:34] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 03:31:34] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 03:31:34] + export BOINC_APP=ATLAS
[2025-06-05 03:31:34] + BOINC_APP=ATLAS
[2025-06-05 03:31:34] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 03:31:34] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 03:31:34] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 03:31:34] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 03:31:34] + '[' -z 1 ']'
[2025-06-05 03:31:34] + '[' 1 == 1 ']'
[2025-06-05 03:31:34] + shift
[2025-06-05 03:31:34] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-05 03:31:34] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-05 03:31:34] + '[' 0 -ne 0 ']'
[2025-06-05 03:31:34] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-05 03:31:34] + '[' -f /etc/os-release ']'
[2025-06-05 03:31:34] +++ cat /etc/os-release
[2025-06-05 03:31:34] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-05 03:31:34] +++ NAME='CentOS Linux'
[2025-06-05 03:31:34] +++ VERSION='7 (Core)'
[2025-06-05 03:31:34] +++ ID=centos
[2025-06-05 03:31:34] +++ ID_LIKE='rhel fedora'
[2025-06-05 03:31:34] +++ VERSION_ID=7
[2025-06-05 03:31:34] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-05 03:31:34] +++ ANSI_COLOR='0;31'
[2025-06-05 03:31:34] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-05 03:31:34] +++ HOME_URL=https://www.centos.org/
[2025-06-05 03:31:34] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-05 03:31:34] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-05 03:31:34] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-05 03:31:34] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-05 03:31:34] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-05 03:31:34] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-05 03:31:34] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-05 03:31:34] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-05 03:31:34] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-05 03:31:34] + HOME=/scratch/boinc/var/slot20/slots/0
[2025-06-05 03:31:34] + export HOME
[2025-06-05 03:31:34] + cd /scratch/boinc/var/slot20/slots/0
[2025-06-05 03:31:34] + '[' '!' -z '' ']'
[2025-06-05 03:31:34] + '[' -z '' ']'
[2025-06-05 03:31:34] ++ /bin/hostname -f
[2025-06-05 03:31:34] + nodename=skurut05.grid.cesnet.cz
[2025-06-05 03:31:34] + echo nodename=skurut05.grid.cesnet.cz
[2025-06-05 03:31:34] + echo Processors=2
[2025-06-05 03:31:34] + echo Nodecount=1
[2025-06-05 03:31:34] + echo Benchmark=HEPSPEC:1.0
[2025-06-05 03:31:34] + executable=./runpilot2-wrapper.sh
[2025-06-05 03:31:34] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-05 03:31:34] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-05 03:31:34] ++ head -n 1
[2025-06-05 03:31:34] ++ tr -d '\0'
[2025-06-05 03:31:34] + line1='#!/bin/bash'
[2025-06-05 03:31:34] ++ echo '#!/bin/bash'
[2025-06-05 03:31:34] ++ sed -n 's/^#! *//p'
[2025-06-05 03:31:34] + shebang=/bin/bash
[2025-06-05 03:31:34] ++ echo /bin/bash
[2025-06-05 03:31:34] ++ awk '{print $1}'
[2025-06-05 03:31:34] + interpreter=/bin/bash
[2025-06-05 03:31:34] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-05 03:31:34] + '[' x/bin/bash = x ']'
[2025-06-05 03:31:34] + type /bin/bash
[2025-06-05 03:31:34] + '[' xgnutime = xgnutime ']'
[2025-06-05 03:31:34] + /usr/bin/time -o /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-05 03:31:34] + RESULT=2
[2025-06-05 03:31:34] + sed -i -e /nodename=/d /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-05 03:31:34] ++ grep domain_name init_data.xml
[2025-06-05 03:31:34] ++ awk -F '>' '{print $2}'
[2025-06-05 03:31:34] ++ sed -e 's# #_#g'
[2025-06-05 03:31:34] ++ awk -F '<' '{print $1}'
[2025-06-05 03:31:34] + hostname=skurut05.grid.cesnet.cz
[2025-06-05 03:31:34] ++ grep user_name init_data.xml
[2025-06-05 03:31:34] ++ awk -F '>' '{print $2}'
[2025-06-05 03:31:34] ++ awk -F '<' '{print $1}'
[2025-06-05 03:31:34] ++ sed -e 's# #_#g'
[2025-06-05 03:31:34] + username=praguelcg2
[2025-06-05 03:31:34] + nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-05 03:31:34] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-05 03:31:34] + '[' -n 4 ']'
[2025-06-05 03:31:34] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-05 03:31:34] + echo exitcode=2
[2025-06-05 03:31:34] + runtimeenvironments=
[2025-06-05 03:31:34] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-05 03:31:34] + RTE_function_0 2
[2025-06-05 03:31:34] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 03:31:34] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-05 03:31:34] + export BOINC_APP=ATLAS
[2025-06-05 03:31:34] + BOINC_APP=ATLAS
[2025-06-05 03:31:34] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 03:31:34] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-05 03:31:34] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 03:31:34] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-05 03:31:34] + '[' -z 2 ']'
[2025-06-05 03:31:34] + '[' 2 == 1 ']'
[2025-06-05 03:31:34] + '[' 0 -ne 0 ']'
[2025-06-05 03:31:34] + echo 'zip all output files'
[2025-06-05 03:31:34] + flist='*.diag '
[2025-06-05 03:31:34] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-05 03:31:34] + '[' -e ./heartbeat.json ']'
[2025-06-05 03:31:34] + flist='*.diag  ./heartbeat.json'
[2025-06-05 03:31:34] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-05 03:31:34] + '[' -e ./output.list ']'
[2025-06-05 03:31:34] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-05 03:31:34] + '[' -e ./log.44871837._061873.job.log.1 ']'
[2025-06-05 03:31:34] + flist='*.diag  ./heartbeat.json ./log.44871837._061873.job.log.1'
[2025-06-05 03:31:34] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-05 03:31:34] + '[' -e ./log.44871837._061873.job.log.1 ']'
[2025-06-05 03:31:34] + flist='*.diag  ./heartbeat.json ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1'
[2025-06-05 03:31:34] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-05 03:31:34] + '[' -e ./gmlog/ ']'
[2025-06-05 03:31:34] + '[' -f output.list ']'
[2025-06-05 03:31:34] + tar cvf result.tar.gz GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag ./heartbeat.json ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1
[2025-06-05 03:31:34] + '[' xgnutime = xcgroup ']'
[2025-06-05 03:31:34] + '[' -n '' ']'
[2025-06-05 03:31:34] + '[' -n '' ']'
[2025-06-05 03:31:34] ++ date +%s
[2025-06-05 03:31:34] + ACCOUNTING_ENDTIME=1749087021
[2025-06-05 03:31:34] ++ date -d '1970-01-01 UTC 1749086833 seconds' +%Y%m%d%H%M%SZ
[2025-06-05 03:31:34] + echo LRMSStartTime=20250605032713Z
[2025-06-05 03:31:34] ++ date -d '1970-01-01 UTC 1749087021 seconds' +%Y%m%d%H%M%SZ
[2025-06-05 03:31:34] + echo LRMSEndTime=20250605033021Z
[2025-06-05 03:31:34] + echo walltime=188
[2025-06-05 03:31:34] + echo exitcode=2
[2025-06-05 03:31:34] + exit 2
[2025-06-05 03:31:34] ./pilotlog.txt
[2025-06-05 03:31:34] ./PanDA_Pilot-6666762817/pilotlog.txt
[2025-06-05 03:31:34] ./PanDA_Pilot-6666762817/prmon.log
[2025-06-05 03:31:34] ./PanDA_Pilot-6666762817/log.EVNTtoHITS
[2025-06-05 03:31:34] ./PanDA_Pilot-6666762817/PoolFileCatalog.xml
[2025-06-05 03:31:34] ./log.44871837._061873.job.log.1
[2025-06-05 03:31:34] ./runtime_log.err
[2025-06-05 03:31:34] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-05 03:31:34] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-05 03:31:34] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-05 03:31:34] ./pilot3/pilot/util/realtimelogger.py
[2025-06-05 03:31:34] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-05 03:31:34] ./pilot3/pilot/util/loggingsupport.py
[2025-06-05 03:31:34] ./runtime_log
03:05:26 (754814): wrapper (7.7.26015): starting
03:05:26 (754814): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 03:05:26] Arguments: --nthreads 4
[2025-06-06 03:05:26] Threads: 4
[2025-06-06 03:05:26] This job has been restarted, cleaning up previous attempt
[2025-06-06 03:05:26] Checking for CVMFS
[2025-06-06 03:05:26] No cvmfs_config command found, will try listing directly
[2025-06-06 03:05:26] CVMFS is ok
[2025-06-06 03:05:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 03:05:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 03:05:26] Further information can be found at the LHC@home message board.
[2025-06-06 03:05:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 03:05:26] Checking for apptainer binary...
[2025-06-06 03:05:26] which: no apptainer in ((null))
[2025-06-06 03:05:26] apptainer is not installed, using version from CVMFS
[2025-06-06 03:05:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 03:05:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-06 03:05:26] apptainer works
[2025-06-06 03:05:26] Set ATHENA_PROC_NUMBER=4
[2025-06-06 03:05:26] Set ATHENA_CORE_NUMBER=4
[2025-06-06 03:05:26] Starting ATLAS job with PandaID=6666762817
[2025-06-06 03:05:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 03:10:18] Job failed
[2025-06-06 03:10:18] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-06 03:10:18] ++ pwd
[2025-06-06 03:10:18] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 03:10:18] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 03:10:18] + mv ATLAS.root_0 EVNT.44871834._002441.pool.root.1
[2025-06-06 03:10:18] mv: 'ATLAS.root_0' and 'EVNT.44871834._002441.pool.root.1' are the same file
[2025-06-06 03:10:18] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-06 03:10:18] + umask 077
[2025-06-06 03:10:18] ++ date +%s
[2025-06-06 03:10:18] + ACCOUNTING_STARTTIME=1749171927
[2025-06-06 03:10:18] + echo 'Detecting resource accounting method available for the job.'
[2025-06-06 03:10:18] Detecting resource accounting method available for the job.
[2025-06-06 03:10:18] + JOB_ACCOUNTING=
[2025-06-06 03:10:18] + command -v arc-job-cgroup
[2025-06-06 03:10:18] + '[' -z '' ']'
[2025-06-06 03:10:18] + GNU_TIME=/usr/bin/time
[2025-06-06 03:10:18] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-06 03:10:18] Looking for /usr/bin/time tool for accounting measurements
[2025-06-06 03:10:18] + '[' '!' -z /usr/bin/time ']'
[2025-06-06 03:10:18] + /usr/bin/time --version
[2025-06-06 03:10:18] + echo 'GNU time found and will be used for job accounting.'
[2025-06-06 03:10:18] GNU time found and will be used for job accounting.
[2025-06-06 03:10:18] + JOB_ACCOUNTING=gnutime
[2025-06-06 03:10:18] + '[' -z gnutime ']'
[2025-06-06 03:10:18] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 03:10:18] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 03:10:18] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666762817.out
[2025-06-06 03:10:18] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666762817.out
[2025-06-06 03:10:18] + export PILOT_NOKILL=YES
[2025-06-06 03:10:18] + PILOT_NOKILL=YES
[2025-06-06 03:10:18] + export GRID_GLOBAL_JOBID=GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-06 03:10:18] + GRID_GLOBAL_JOBID=GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-06 03:10:18] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-06 03:10:18] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-06 03:10:18] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 03:10:18] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 03:10:18] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-06 03:10:18] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-06 03:10:18] ++ pwd
[2025-06-06 03:10:18] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot20/slots/0
[2025-06-06 03:10:18] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-06 03:10:18] ++ pwd
[2025-06-06 03:10:18] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot20/slots/0/log.44871837._061873.job.log.1
[2025-06-06 03:10:18] ++ pwd
[2025-06-06 03:10:18] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot20/slots/0/log.44871837._061873.job.log.1
[2025-06-06 03:10:18] ++ pwd
[2025-06-06 03:10:18] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0.diag
[2025-06-06 03:10:18] + '[' '!' -z '' ']'
[2025-06-06 03:10:18] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-06 03:10:18] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-06 03:10:18] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-06 03:10:18] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-06 03:10:18] + '[' '!' -z '' ']'
[2025-06-06 03:10:18] + '[' -z yes ']'
[2025-06-06 03:10:18] ++ pwd
[2025-06-06 03:10:18] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-06 03:10:18] + runtimeenvironments=
[2025-06-06 03:10:18] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 03:10:18] + RTE_function_0 1
[2025-06-06 03:10:18] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 03:10:18] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 03:10:18] + export BOINC_APP=ATLAS
[2025-06-06 03:10:18] + BOINC_APP=ATLAS
[2025-06-06 03:10:18] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 03:10:18] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 03:10:18] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 03:10:18] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 03:10:18] + '[' -z 1 ']'
[2025-06-06 03:10:18] + '[' 1 == 1 ']'
[2025-06-06 03:10:18] + shift
[2025-06-06 03:10:18] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 03:10:18] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 03:10:18] + '[' 0 -ne 0 ']'
[2025-06-06 03:10:18] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-06 03:10:18] + '[' -f /etc/os-release ']'
[2025-06-06 03:10:18] +++ cat /etc/os-release
[2025-06-06 03:10:18] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-06 03:10:18] +++ NAME='CentOS Linux'
[2025-06-06 03:10:18] +++ VERSION='7 (Core)'
[2025-06-06 03:10:18] +++ ID=centos
[2025-06-06 03:10:18] +++ ID_LIKE='rhel fedora'
[2025-06-06 03:10:18] +++ VERSION_ID=7
[2025-06-06 03:10:18] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-06 03:10:18] +++ ANSI_COLOR='0;31'
[2025-06-06 03:10:18] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-06 03:10:18] +++ HOME_URL=https://www.centos.org/
[2025-06-06 03:10:18] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-06 03:10:18] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-06 03:10:18] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-06 03:10:18] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-06 03:10:18] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-06 03:10:18] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-06 03:10:18] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-06 03:10:18] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-06 03:10:18] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-06 03:10:18] + HOME=/scratch/boinc/var/slot20/slots/0
[2025-06-06 03:10:18] + export HOME
[2025-06-06 03:10:18] + cd /scratch/boinc/var/slot20/slots/0
[2025-06-06 03:10:18] + '[' '!' -z '' ']'
[2025-06-06 03:10:18] + '[' -z '' ']'
[2025-06-06 03:10:18] ++ /bin/hostname -f
[2025-06-06 03:10:18] + nodename=skurut05.grid.cesnet.cz
[2025-06-06 03:10:18] + echo nodename=skurut05.grid.cesnet.cz
[2025-06-06 03:10:18] + echo Processors=2
[2025-06-06 03:10:18] + echo Nodecount=1
[2025-06-06 03:10:18] + echo Benchmark=HEPSPEC:1.0
[2025-06-06 03:10:18] + executable=./runpilot2-wrapper.sh
[2025-06-06 03:10:18] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-06 03:10:18] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-06 03:10:18] ++ head -n 1
[2025-06-06 03:10:18] ++ tr -d '\0'
[2025-06-06 03:10:18] + line1='#!/bin/bash'
[2025-06-06 03:10:18] ++ echo '#!/bin/bash'
[2025-06-06 03:10:18] ++ sed -n 's/^#! *//p'
[2025-06-06 03:10:18] + shebang=/bin/bash
[2025-06-06 03:10:18] ++ echo /bin/bash
[2025-06-06 03:10:18] ++ awk '{print $1}'
[2025-06-06 03:10:18] + interpreter=/bin/bash
[2025-06-06 03:10:18] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-06 03:10:18] + '[' x/bin/bash = x ']'
[2025-06-06 03:10:18] + type /bin/bash
[2025-06-06 03:10:18] + '[' xgnutime = xgnutime ']'
[2025-06-06 03:10:18] + /usr/bin/time -o /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-06 03:10:18] + RESULT=2
[2025-06-06 03:10:18] + sed -i -e /nodename=/d /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-06 03:10:18] ++ grep domain_name init_data.xml
[2025-06-06 03:10:18] ++ awk -F '>' '{print $2}'
[2025-06-06 03:10:18] ++ awk -F '<' '{print $1}'
[2025-06-06 03:10:18] ++ sed -e 's# #_#g'
[2025-06-06 03:10:18] + hostname=skurut05.grid.cesnet.cz
[2025-06-06 03:10:18] ++ grep user_name init_data.xml
[2025-06-06 03:10:18] ++ awk -F '>' '{print $2}'
[2025-06-06 03:10:18] ++ awk -F '<' '{print $1}'
[2025-06-06 03:10:18] ++ sed -e 's# #_#g'
[2025-06-06 03:10:18] + username=praguelcg2
[2025-06-06 03:10:18] + nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-06 03:10:18] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-06 03:10:18] + '[' -n 4 ']'
[2025-06-06 03:10:18] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-06 03:10:18] + echo exitcode=2
[2025-06-06 03:10:18] + runtimeenvironments=
[2025-06-06 03:10:18] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 03:10:18] + RTE_function_0 2
[2025-06-06 03:10:18] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 03:10:18] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 03:10:18] + export BOINC_APP=ATLAS
[2025-06-06 03:10:18] + BOINC_APP=ATLAS
[2025-06-06 03:10:18] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 03:10:18] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 03:10:18] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 03:10:18] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 03:10:18] + '[' -z 2 ']'
[2025-06-06 03:10:18] + '[' 2 == 1 ']'
[2025-06-06 03:10:18] + '[' 0 -ne 0 ']'
[2025-06-06 03:10:18] + echo 'zip all output files'
[2025-06-06 03:10:18] + flist='*.diag '
[2025-06-06 03:10:18] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 03:10:18] + '[' -e ./heartbeat.json ']'
[2025-06-06 03:10:18] + flist='*.diag  ./heartbeat.json'
[2025-06-06 03:10:18] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 03:10:18] + '[' -e ./output.list ']'
[2025-06-06 03:10:18] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 03:10:18] + '[' -e ./log.44871837._061873.job.log.1 ']'
[2025-06-06 03:10:18] + flist='*.diag  ./heartbeat.json ./log.44871837._061873.job.log.1'
[2025-06-06 03:10:18] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 03:10:18] + '[' -e ./log.44871837._061873.job.log.1 ']'
[2025-06-06 03:10:18] + flist='*.diag  ./heartbeat.json ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1'
[2025-06-06 03:10:18] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 03:10:18] + '[' -e ./gmlog/ ']'
[2025-06-06 03:10:18] + '[' -f output.list ']'
[2025-06-06 03:10:18] + tar cvf result.tar.gz GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag ./heartbeat.json ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1
[2025-06-06 03:10:18] + '[' xgnutime = xcgroup ']'
[2025-06-06 03:10:18] + '[' -n '' ']'
[2025-06-06 03:10:18] + '[' -n '' ']'
[2025-06-06 03:10:18] ++ date +%s
[2025-06-06 03:10:18] + ACCOUNTING_ENDTIME=1749172114
[2025-06-06 03:10:18] ++ date -d '1970-01-01 UTC 1749171927 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 03:10:18] + echo LRMSStartTime=20250606030527Z
[2025-06-06 03:10:18] ++ date -d '1970-01-01 UTC 1749172114 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 03:10:18] + echo LRMSEndTime=20250606030834Z
[2025-06-06 03:10:18] + echo walltime=187
[2025-06-06 03:10:18] + echo exitcode=2
[2025-06-06 03:10:18] + exit 2
[2025-06-06 03:10:18] ./pilotlog.txt
[2025-06-06 03:10:18] ./PanDA_Pilot-6666762817/pilotlog.txt
[2025-06-06 03:10:18] ./PanDA_Pilot-6666762817/prmon.log
[2025-06-06 03:10:18] ./PanDA_Pilot-6666762817/log.EVNTtoHITS
[2025-06-06 03:10:18] ./PanDA_Pilot-6666762817/PoolFileCatalog.xml
[2025-06-06 03:10:18] ./log.44871837._061873.job.log.1
[2025-06-06 03:10:18] ./runtime_log.err
[2025-06-06 03:10:18] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-06 03:10:18] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-06 03:10:18] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-06 03:10:18] ./pilot3/pilot/util/realtimelogger.py
[2025-06-06 03:10:18] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-06 03:10:18] ./pilot3/pilot/util/loggingsupport.py
[2025-06-06 03:10:18] ./runtime_log
15:07:47 (1759760): wrapper (7.7.26015): starting
15:07:47 (1759760): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 15:07:47] Arguments: --nthreads 4
[2025-06-06 15:07:47] Threads: 4
[2025-06-06 15:07:47] This job has been restarted, cleaning up previous attempt
[2025-06-06 15:07:47] Checking for CVMFS
[2025-06-06 15:07:47] No cvmfs_config command found, will try listing directly
[2025-06-06 15:07:47] CVMFS is ok
[2025-06-06 15:07:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 15:07:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 15:07:47] Further information can be found at the LHC@home message board.
[2025-06-06 15:07:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 15:07:47] Checking for apptainer binary...
[2025-06-06 15:07:47] which: no apptainer in ((null))
[2025-06-06 15:07:47] apptainer is not installed, using version from CVMFS
[2025-06-06 15:07:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 15:07:47] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-06-06 15:07:47] apptainer works
[2025-06-06 15:07:47] Set ATHENA_PROC_NUMBER=4
[2025-06-06 15:07:47] Set ATHENA_CORE_NUMBER=4
[2025-06-06 15:07:47] Starting ATLAS job with PandaID=6666762817
[2025-06-06 15:07:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot20/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 15:14:29] Job failed
[2025-06-06 15:14:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot20/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-06 15:14:29] ++ pwd
[2025-06-06 15:14:29] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 15:14:29] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 15:14:29] + mv ATLAS.root_0 EVNT.44871834._002441.pool.root.1
[2025-06-06 15:14:29] mv: 'ATLAS.root_0' and 'EVNT.44871834._002441.pool.root.1' are the same file
[2025-06-06 15:14:29] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-06 15:14:29] + umask 077
[2025-06-06 15:14:29] ++ date +%s
[2025-06-06 15:14:29] + ACCOUNTING_STARTTIME=1749215267
[2025-06-06 15:14:29] + echo 'Detecting resource accounting method available for the job.'
[2025-06-06 15:14:29] Detecting resource accounting method available for the job.
[2025-06-06 15:14:29] + JOB_ACCOUNTING=
[2025-06-06 15:14:29] + command -v arc-job-cgroup
[2025-06-06 15:14:29] + '[' -z '' ']'
[2025-06-06 15:14:29] + GNU_TIME=/usr/bin/time
[2025-06-06 15:14:29] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-06 15:14:29] Looking for /usr/bin/time tool for accounting measurements
[2025-06-06 15:14:29] + '[' '!' -z /usr/bin/time ']'
[2025-06-06 15:14:29] + /usr/bin/time --version
[2025-06-06 15:14:29] + echo 'GNU time found and will be used for job accounting.'
[2025-06-06 15:14:29] GNU time found and will be used for job accounting.
[2025-06-06 15:14:29] + JOB_ACCOUNTING=gnutime
[2025-06-06 15:14:29] + '[' -z gnutime ']'
[2025-06-06 15:14:29] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 15:14:29] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 15:14:29] + export GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666762817.out
[2025-06-06 15:14:29] + GTAG=http://aipanda403.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666762817.out
[2025-06-06 15:14:29] + export PILOT_NOKILL=YES
[2025-06-06 15:14:29] + PILOT_NOKILL=YES
[2025-06-06 15:14:29] + export GRID_GLOBAL_JOBID=GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-06 15:14:29] + GRID_GLOBAL_JOBID=GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-06 15:14:29] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-06 15:14:29] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn
[2025-06-06 15:14:29] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 15:14:29] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 15:14:29] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-06 15:14:29] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-06 15:14:29] ++ pwd
[2025-06-06 15:14:29] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot20/slots/0
[2025-06-06 15:14:29] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-06 15:14:29] ++ pwd
[2025-06-06 15:14:29] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot20/slots/0/log.44871837._061873.job.log.1
[2025-06-06 15:14:29] ++ pwd
[2025-06-06 15:14:29] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot20/slots/0/log.44871837._061873.job.log.1
[2025-06-06 15:14:29] ++ pwd
[2025-06-06 15:14:29] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0.diag
[2025-06-06 15:14:29] + '[' '!' -z '' ']'
[2025-06-06 15:14:29] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-06 15:14:29] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-06 15:14:29] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-06 15:14:29] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-06 15:14:29] + '[' '!' -z '' ']'
[2025-06-06 15:14:29] + '[' -z yes ']'
[2025-06-06 15:14:29] ++ pwd
[2025-06-06 15:14:29] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-06 15:14:29] + runtimeenvironments=
[2025-06-06 15:14:29] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 15:14:29] + RTE_function_0 1
[2025-06-06 15:14:29] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:14:29] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:14:29] + export BOINC_APP=ATLAS
[2025-06-06 15:14:29] + BOINC_APP=ATLAS
[2025-06-06 15:14:29] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:14:29] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:14:29] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:14:29] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:14:29] + '[' -z 1 ']'
[2025-06-06 15:14:29] + '[' 1 == 1 ']'
[2025-06-06 15:14:29] + shift
[2025-06-06 15:14:29] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 15:14:29] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot20/slots/0/
[2025-06-06 15:14:29] + '[' 0 -ne 0 ']'
[2025-06-06 15:14:29] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-06 15:14:29] + '[' -f /etc/os-release ']'
[2025-06-06 15:14:29] +++ cat /etc/os-release
[2025-06-06 15:14:29] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-06 15:14:29] +++ NAME='CentOS Linux'
[2025-06-06 15:14:29] +++ VERSION='7 (Core)'
[2025-06-06 15:14:29] +++ ID=centos
[2025-06-06 15:14:29] +++ ID_LIKE='rhel fedora'
[2025-06-06 15:14:29] +++ VERSION_ID=7
[2025-06-06 15:14:29] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-06 15:14:29] +++ ANSI_COLOR='0;31'
[2025-06-06 15:14:29] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-06 15:14:29] +++ HOME_URL=https://www.centos.org/
[2025-06-06 15:14:29] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-06 15:14:29] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-06 15:14:29] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-06 15:14:29] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-06 15:14:29] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-06 15:14:29] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-06 15:14:29] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-06 15:14:29] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-06 15:14:29] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-06 15:14:29] + HOME=/scratch/boinc/var/slot20/slots/0
[2025-06-06 15:14:29] + export HOME
[2025-06-06 15:14:29] + cd /scratch/boinc/var/slot20/slots/0
[2025-06-06 15:14:29] + '[' '!' -z '' ']'
[2025-06-06 15:14:29] + '[' -z '' ']'
[2025-06-06 15:14:29] ++ /bin/hostname -f
[2025-06-06 15:14:29] + nodename=skurut05.grid.cesnet.cz
[2025-06-06 15:14:29] + echo nodename=skurut05.grid.cesnet.cz
[2025-06-06 15:14:29] + echo Processors=2
[2025-06-06 15:14:29] + echo Nodecount=1
[2025-06-06 15:14:29] + echo Benchmark=HEPSPEC:1.0
[2025-06-06 15:14:29] + executable=./runpilot2-wrapper.sh
[2025-06-06 15:14:29] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-06 15:14:29] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-06 15:14:29] ++ head -n 1
[2025-06-06 15:14:29] ++ tr -d '\0'
[2025-06-06 15:14:29] + line1='#!/bin/bash'
[2025-06-06 15:14:29] ++ echo '#!/bin/bash'
[2025-06-06 15:14:29] ++ sed -n 's/^#! *//p'
[2025-06-06 15:14:29] + shebang=/bin/bash
[2025-06-06 15:14:29] ++ echo /bin/bash
[2025-06-06 15:14:29] ++ awk '{print $1}'
[2025-06-06 15:14:29] + interpreter=/bin/bash
[2025-06-06 15:14:29] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-06 15:14:29] + '[' x/bin/bash = x ']'
[2025-06-06 15:14:29] + type /bin/bash
[2025-06-06 15:14:29] + '[' xgnutime = xgnutime ']'
[2025-06-06 15:14:29] + /usr/bin/time -o /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-06 15:14:29] + RESULT=2
[2025-06-06 15:14:29] + sed -i -e /nodename=/d /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-06 15:14:29] ++ grep domain_name init_data.xml
[2025-06-06 15:14:29] ++ awk -F '>' '{print $2}'
[2025-06-06 15:14:29] ++ awk -F '<' '{print $1}'
[2025-06-06 15:14:29] ++ sed -e 's# #_#g'
[2025-06-06 15:14:29] + hostname=skurut05.grid.cesnet.cz
[2025-06-06 15:14:29] ++ grep user_name init_data.xml
[2025-06-06 15:14:29] ++ awk -F '>' '{print $2}'
[2025-06-06 15:14:29] ++ awk -F '<' '{print $1}'
[2025-06-06 15:14:29] ++ sed -e 's# #_#g'
[2025-06-06 15:14:29] + username=praguelcg2
[2025-06-06 15:14:29] + nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-06 15:14:29] + echo nodename=praguelcg2@skurut05.grid.cesnet.cz
[2025-06-06 15:14:29] + '[' -n 4 ']'
[2025-06-06 15:14:29] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot20/slots/0/GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag
[2025-06-06 15:14:29] + echo exitcode=2
[2025-06-06 15:14:29] + runtimeenvironments=
[2025-06-06 15:14:29] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 15:14:29] + RTE_function_0 2
[2025-06-06 15:14:29] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:14:29] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:14:29] + export BOINC_APP=ATLAS
[2025-06-06 15:14:29] + BOINC_APP=ATLAS
[2025-06-06 15:14:29] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:14:29] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:14:29] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:14:29] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:14:29] + '[' -z 2 ']'
[2025-06-06 15:14:29] + '[' 2 == 1 ']'
[2025-06-06 15:14:29] + '[' 0 -ne 0 ']'
[2025-06-06 15:14:29] + echo 'zip all output files'
[2025-06-06 15:14:29] + flist='*.diag '
[2025-06-06 15:14:29] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 15:14:29] + '[' -e ./heartbeat.json ']'
[2025-06-06 15:14:29] + flist='*.diag  ./heartbeat.json'
[2025-06-06 15:14:29] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 15:14:29] + '[' -e ./output.list ']'
[2025-06-06 15:14:29] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 15:14:29] + '[' -e ./log.44871837._061873.job.log.1 ']'
[2025-06-06 15:14:29] + flist='*.diag  ./heartbeat.json ./log.44871837._061873.job.log.1'
[2025-06-06 15:14:29] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 15:14:29] + '[' -e ./log.44871837._061873.job.log.1 ']'
[2025-06-06 15:14:29] + flist='*.diag  ./heartbeat.json ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1'
[2025-06-06 15:14:29] + for f in ./heartbeat.json ./output.list ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1 ./gmlog/
[2025-06-06 15:14:29] + '[' -e ./gmlog/ ']'
[2025-06-06 15:14:29] + '[' -f output.list ']'
[2025-06-06 15:14:29] + tar cvf result.tar.gz GJrNDmGo0d7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlVYKDmVqJ6Pn.diag ./heartbeat.json ./log.44871837._061873.job.log.1 ./log.44871837._061873.job.log.1
[2025-06-06 15:14:29] + '[' xgnutime = xcgroup ']'
[2025-06-06 15:14:29] + '[' -n '' ']'
[2025-06-06 15:14:29] + '[' -n '' ']'
[2025-06-06 15:14:29] ++ date +%s
[2025-06-06 15:14:29] + ACCOUNTING_ENDTIME=1749215456
[2025-06-06 15:14:29] ++ date -d '1970-01-01 UTC 1749215267 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 15:14:29] + echo LRMSStartTime=20250606150747Z
[2025-06-06 15:14:29] ++ date -d '1970-01-01 UTC 1749215456 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 15:14:29] + echo LRMSEndTime=20250606151056Z
[2025-06-06 15:14:29] + echo walltime=189
[2025-06-06 15:14:29] + echo exitcode=2
[2025-06-06 15:14:29] + exit 2
[2025-06-06 15:14:29] ./pilotlog.txt
[2025-06-06 15:14:29] ./PanDA_Pilot-6666762817/pilotlog.txt
[2025-06-06 15:14:29] ./PanDA_Pilot-6666762817/prmon.log
[2025-06-06 15:14:29] ./PanDA_Pilot-6666762817/log.EVNTtoHITS
[2025-06-06 15:14:29] ./PanDA_Pilot-6666762817/PoolFileCatalog.xml
[2025-06-06 15:14:29] ./log.44871837._061873.job.log.1
[2025-06-06 15:14:29] ./runtime_log.err
[2025-06-06 15:14:29] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-06 15:14:29] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-06 15:14:29] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-06 15:14:29] ./pilot3/pilot/util/realtimelogger.py
[2025-06-06 15:14:29] ./pilot3/pilot/util/lokirealtimel

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