Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:32:09 (231865): wrapper (7.7.26015): starting
08:32:09 (231865): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 08:32:09] Arguments: --nthreads 4
[2025-06-03 08:32:09] Threads: 4
[2025-06-03 08:32:09] Checking for CVMFS
[2025-06-03 08:32:09] No cvmfs_config command found, will try listing directly
[2025-06-03 08:32:09] CVMFS is ok
[2025-06-03 08:32:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 08:32:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 08:32:09] Further information can be found at the LHC@home message board.
[2025-06-03 08:32:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:32:09] Checking for apptainer binary...
[2025-06-03 08:32:09] which: no apptainer in ((null))
[2025-06-03 08:32:09] apptainer is not installed, using version from CVMFS
[2025-06-03 08:32:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:32:09] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2025-06-03 08:32:09] apptainer works
[2025-06-03 08:32:09] Set ATHENA_PROC_NUMBER=4
[2025-06-03 08:32:09] Set ATHENA_CORE_NUMBER=4
[2025-06-03 08:32:09] Starting ATLAS job with PandaID=6666744851
[2025-06-03 08:32:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 13:21:35]  *** The last 200 lines of the pilot log: ***
[2025-06-03 13:21:35] 2025-06-03 11:12:58,864 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4877/.job.ad'
[2025-06-03 13:21:35] 2025-06-03 11:12:58,864 | INFO     | total number of processed events: 400 (read)
[2025-06-03 13:21:35] 2025-06-03 11:12:58,867 | INFO     | executing command: lscpu
[2025-06-03 13:21:35] 2025-06-03 11:12:58,918 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-06-03 13:21:35] 2025-06-03 11:13:00,523 | INFO     | 16846s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-06-03 13:21:35] 2025-06-03 11:13:00,979 | INFO     | monitor loop #1221: job 0:6666744851 is in state 'finished'
[2025-06-03 13:21:35] 2025-06-03 11:13:00,979 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-06-03 13:21:35] 2025-06-03 11:13:02,997 | INFO     | CPU arch script returned: x86-64-v3
[2025-06-03 13:21:35] 2025-06-03 11:13:02,998 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6666744851/memory_monitor_summary.json (trf name=prmon)
[2025-06-03 13:21:35] 2025-06-03 11:13:02,999 | INFO     | extracted standard info from prmon json
[2025-06-03 13:21:35] 2025-06-03 11:13:02,999 | INFO     | extracted standard memory fields from prmon json
[2025-06-03 13:21:35] 2025-06-03 11:13:02,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-06-03 13:21:35] 2025-06-03 11:13:03,000 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-06-03 13:21:35] 2025-06-03 11:13:03,000 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-06-03 13:21:35] 2025-06-03 11:13:03,005 | INFO     | fitting pss+swap vs Time
[2025-06-03 13:21:35] 2025-06-03 11:13:03,006 | INFO     | sum of square deviations: 6519285025.0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,008 | INFO     | sum of deviations: 35163736700.000015
[2025-06-03 13:21:35] 2025-06-03 11:13:03,008 | INFO     | mean x: 1748940744.5
[2025-06-03 13:21:35] 2025-06-03 11:13:03,008 | INFO     | mean y: 2328620.7898550723
[2025-06-03 13:21:35] 2025-06-03 11:13:03,008 | INFO     | -- intersect: -9431112562.9694
[2025-06-03 13:21:35] 2025-06-03 11:13:03,008 | INFO     | intersect: -9431112562.9694
[2025-06-03 13:21:35] 2025-06-03 11:13:03,009 | INFO     | chi2: 1.4580080715464272
[2025-06-03 13:21:35] 2025-06-03 11:13:03,009 | INFO     | sum of square deviations: 6171352920.0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,011 | INFO     | sum of deviations: 34327874318.000008
[2025-06-03 13:21:35] 2025-06-03 11:13:03,012 | INFO     | mean x: 1748940592.0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,012 | INFO     | mean y: 2328254.372693727
[2025-06-03 13:21:35] 2025-06-03 11:13:03,012 | INFO     | -- intersect: -9726075486.281395
[2025-06-03 13:21:35] 2025-06-03 11:13:03,012 | INFO     | intersect: -9726075486.281395
[2025-06-03 13:21:35] 2025-06-03 11:13:03,012 | INFO     | chi2: 1.4585301441558427
[2025-06-03 13:21:35] 2025-06-03 11:13:03,012 | INFO     | current chi2=1.4585301441558427 (change=-0.03580725097507653 %)
[2025-06-03 13:21:35] 2025-06-03 11:13:03,013 | INFO     | right removable region: 270
[2025-06-03 13:21:35] 2025-06-03 11:13:03,013 | INFO     | sum of square deviations: 6171352920.0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,015 | INFO     | sum of deviations: -3521025529.999999
[2025-06-03 13:21:35] 2025-06-03 11:13:03,015 | INFO     | mean x: 1748940897.0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,015 | INFO     | mean y: 2345427.114391144
[2025-06-03 13:21:35] 2025-06-03 11:13:03,016 | INFO     | -- intersect: 1000192354.4617416
[2025-06-03 13:21:35] 2025-06-03 11:13:03,016 | INFO     | intersect: 1000192354.4617416
[2025-06-03 13:21:35] 2025-06-03 11:13:03,016 | INFO     | chi2: 0.009433112706532557
[2025-06-03 13:21:35] 2025-06-03 11:13:03,016 | INFO     | current chi2=0.009433112706532557 (change=99.35301368417478 %)
[2025-06-03 13:21:35] 2025-06-03 11:13:03,017 | INFO     | sum of square deviations: 5836025702.5
[2025-06-03 13:21:35] 2025-06-03 11:13:03,019 | INFO     | sum of deviations: -3912598193.999999
[2025-06-03 13:21:35] 2025-06-03 11:13:03,019 | INFO     | mean x: 1748941049.5
[2025-06-03 13:21:35] 2025-06-03 11:13:03,019 | INFO     | mean y: 2345605.1052631577
[2025-06-03 13:21:35] 2025-06-03 11:13:03,019 | INFO     | -- intersect: 1174873613.1218905
[2025-06-03 13:21:35] 2025-06-03 11:13:03,019 | INFO     | intersect: 1174873613.1218905
[2025-06-03 13:21:35] 2025-06-03 11:13:03,020 | INFO     | chi2: 0.009219041359250802
[2025-06-03 13:21:35] 2025-06-03 11:13:03,020 | INFO     | current chi2=0.009219041359250802 (change=2.269360644164761 %)
[2025-06-03 13:21:35] 2025-06-03 11:13:03,020 | INFO     | left removable region: 20
[2025-06-03 13:21:35] 2025-06-03 11:13:03,020 | INFO     | sum of square deviations: 4844974562.5
[2025-06-03 13:21:35] 2025-06-03 11:13:03,022 | INFO     | sum of deviations: -4002084157.000001
[2025-06-03 13:21:35] 2025-06-03 11:13:03,022 | INFO     | mean x: 1748941171.5
[2025-06-03 13:21:35] 2025-06-03 11:13:03,023 | INFO     | mean y: 2345510.112
[2025-06-03 13:21:35] 2025-06-03 11:13:03,023 | INFO     | -- intersect: 1447019710.9138894
[2025-06-03 13:21:35] 2025-06-03 11:13:03,023 | INFO     | intersect: 1447019710.9138894
[2025-06-03 13:21:35] 2025-06-03 11:13:03,023 | INFO     | chi2: 0.009058018341436979
[2025-06-03 13:21:35] 2025-06-03 11:13:03,023 | INFO     | -- intersect: 1447019710.9138894
[2025-06-03 13:21:35] 2025-06-03 11:13:03,024 | INFO     | current memory leak: -0.83 B/s (using 250 data points, chi2=0.01)
[2025-06-03 13:21:35] 2025-06-03 11:13:03,024 | INFO     | ..............................
[2025-06-03 13:21:35] 2025-06-03 11:13:03,025 | INFO     | . Timing measurements:
[2025-06-03 13:21:35] 2025-06-03 11:13:03,025 | INFO     | . get job = 0 s
[2025-06-03 13:21:35] 2025-06-03 11:13:03,025 | INFO     | . initial setup = 1 s
[2025-06-03 13:21:35] 2025-06-03 11:13:03,025 | INFO     | . payload setup = 4 s
[2025-06-03 13:21:35] 2025-06-03 11:13:03,025 | INFO     | . stage-in = 0 s
[2025-06-03 13:21:35] 2025-06-03 11:13:03,025 | INFO     | . payload execution = 16814 s
[2025-06-03 13:21:35] 2025-06-03 11:13:03,025 | INFO     | . stage-out = 1 s
[2025-06-03 13:21:35] 2025-06-03 11:13:03,025 | INFO     | . log creation = 0 s
[2025-06-03 13:21:35] 2025-06-03 11:13:03,025 | INFO     | ..............................
[2025-06-03 13:21:35] 2025-06-03 11:13:03,137 | INFO     | 
[2025-06-03 13:21:35] 2025-06-03 11:13:03,137 | INFO     | job summary report
[2025-06-03 13:21:35] 2025-06-03 11:13:03,137 | INFO     | --------------------------------------------------
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | PanDA job id: 6666744851
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | task id: 44871837
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | errors: (none)
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | status: LOG_TRANSFER = DONE 
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | pilot state: finished 
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | transexitcode: 0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | exeerrorcode: 0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | exeerrordiag: 
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | exitcode: 0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,138 | INFO     | exitmsg: OK
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | cpuconsumptiontime: 64887 s
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | nevents: 400
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | neventsw: 0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | pid: 242706
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | pgrp: 242706
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | corecount: 4
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | event service: False
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | sizes: {0: 2405245, 3: 2405451, 11: 2405479, 16823: 2437077, 16824: 2446040, 16827: 2446096, 16834: 2446394}
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | --------------------------------------------------
[2025-06-03 13:21:35] 2025-06-03 11:13:03,139 | INFO     | 
[2025-06-03 13:21:35] 2025-06-03 11:13:03,140 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2025-06-03 13:21:35] 2025-06-03 11:13:03,160 | INFO     | queue jobs had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,160 | INFO     | queue payloads had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,160 | INFO     | queue data_in had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,161 | INFO     | queue data_out had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,161 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,161 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,161 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,161 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,161 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,162 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,162 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,162 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,162 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,162 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,162 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,162 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,163 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,163 | INFO     | queue completed_jobids has 1 job(s)
[2025-06-03 13:21:35] 2025-06-03 11:13:03,163 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,163 | INFO     | queue messages had 0 job(s) [purged]
[2025-06-03 13:21:35] 2025-06-03 11:13:03,163 | INFO     | job 6666744851 has completed (purged errors)
[2025-06-03 13:21:35] 2025-06-03 11:13:03,163 | INFO     | overall cleanup function is called
[2025-06-03 13:21:35] 2025-06-03 11:13:04,171 | INFO     | --- collectZombieJob: --- 10, [242706]
[2025-06-03 13:21:35] 2025-06-03 11:13:04,171 | INFO     | zombie collector waiting for pid 242706
[2025-06-03 13:21:35] 2025-06-03 11:13:04,171 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-06-03 13:21:35] 2025-06-03 11:13:04,171 | INFO     | collected zombie processes
[2025-06-03 13:21:35] 2025-06-03 11:13:04,172 | INFO     | will attempt to kill all subprocesses of pid=242706
[2025-06-03 13:21:35] 2025-06-03 11:13:04,454 | INFO     | process IDs to be killed: [242706] (in reverse order)
[2025-06-03 13:21:35] 2025-06-03 11:13:04,531 | WARNING  | found no corresponding commands to process id(s)
[2025-06-03 13:21:35] 2025-06-03 11:13:04,531 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-06-03 13:21:35] 2025-06-03 11:13:04,540 | INFO     | did not find any defunct processes belonging to 242706
[2025-06-03 13:21:35] 2025-06-03 11:13:04,547 | INFO     | did not find any defunct processes belonging to 242706
[2025-06-03 13:21:35] 2025-06-03 11:13:04,548 | INFO     | ready for new job
[2025-06-03 13:21:35] 2025-06-03 11:13:04,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-06-03 13:21:35] 2025-06-03 11:13:04,550 | INFO     | **************************************
[2025-06-03 13:21:35] 2025-06-03 11:13:04,550 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-06-03 13:21:35] 2025-06-03 11:13:04,550 | INFO     | **************************************
[2025-06-03 13:21:35] 2025-06-03 11:13:04,550 | INFO     | 
[2025-06-03 13:21:35] 2025-06-03 11:13:04,552 | INFO     | architecture information:
[2025-06-03 13:21:35] 2025-06-03 11:13:04,553 | INFO     | executing command: cat /etc/os-release
[2025-06-03 13:21:35] 2025-06-03 11:13:04,567 | INFO     | cat /etc/os-release:
[2025-06-03 13:21:35] NAME="CentOS Linux"
[2025-06-03 13:21:35] VERSION="7 (Core)"
[2025-06-03 13:21:35] ID="centos"
[2025-06-03 13:21:35] ID_LIKE="rhel fedora"
[2025-06-03 13:21:35] VERSION_ID="7"
[2025-06-03 13:21:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-06-03 13:21:35] ANSI_COLOR="0;31"
[2025-06-03 13:21:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-06-03 13:21:35] HOME_URL="https://www.centos.org/"
[2025-06-03 13:21:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-06-03 13:21:35] 
[2025-06-03 13:21:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-06-03 13:21:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-06-03 13:21:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-06-03 13:21:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-06-03 13:21:35] 
[2025-06-03 13:21:35] 2025-06-03 11:13:04,567 | INFO     | **************************************
[2025-06-03 13:21:35] 2025-06-03 11:13:05,068 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2025-06-03 13:21:35] 2025-06-03 11:13:05,084 | INFO     | sufficient remaining disk space (1640823259136 B)
[2025-06-03 13:21:35] 2025-06-03 11:13:05,084 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-06-03 13:21:35] 2025-06-03 11:13:05,085 | INFO     | current server update state: UPDATING_FINAL
[2025-06-03 13:21:35] 2025-06-03 11:13:05,085 | INFO     | update_server=False
[2025-06-03 13:21:35] 2025-06-03 11:13:05,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-06-03 13:21:35] 2025-06-03 11:13:05,085 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:21:35] 2025-06-03 11:13:05,085 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-06-03 13:21:35] 2025-06-03 11:13:05,085 | INFO     | aborting loop
[2025-06-03 13:21:35] 2025-06-03 11:13:05,527 | INFO     | all data control threads have been joined
[2025-06-03 13:21:35] 2025-06-03 11:13:05,538 | INFO     | found 0 job(s) in 20 queues
[2025-06-03 13:21:35] 2025-06-03 11:13:05,538 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-06-03 13:21:35] 2025-06-03 11:13:05,539 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-06-03 13:21:35] 2025-06-03 11:13:05,840 | INFO     | all payload control threads have been joined
[2025-06-03 13:21:35] 2025-06-03 11:13:05,937 | INFO     | all job control threads have been joined
[2025-06-03 13:21:35] 2025-06-03 11:13:06,090 | INFO     | [job] queue monitor thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:06,091 | INFO     | [job] retrieve thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:06,091 | INFO     | [job] job monitor thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:06,149 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-06-03 13:21:35] 2025-06-03 11:13:06,223 | INFO     | [payload] execute_payloads thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:06,407 | INFO     | [payload] failed_post thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:06,532 | INFO     | [data] control thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:06,563 | INFO     | [data] copytool_in thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:06,693 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-06-03 13:21:35] 2025-06-03 11:13:06,845 | INFO     | [payload] control thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:06,943 | INFO     | [job] control thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:07,035 | INFO     | [job] validate thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:07,126 | INFO     | [payload] validate_pre thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:07,126 | INFO     | [job] create_data_payload thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:07,235 | INFO     | [payload] validate_post thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:08,154 | INFO     | [data] copytool_out thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:10,699 | INFO     | [data] queue_monitor thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:15,467 | INFO     | job.realtimelogging is not enabled
[2025-06-03 13:21:35] 2025-06-03 11:13:16,472 | INFO     | [payload] run_realtimelog thread has finished
[2025-06-03 13:21:35] 2025-06-03 11:13:17,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22475142117184)>', '<ExcThread(monitor, started 22474905323264)>']
[2025-06-03 13:21:35] 2025-06-03 11:13:18,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-06-03 13:21:35] 2025-06-03 11:13:18,599 | INFO     | [monitor] control thread has ended
[2025-06-03 13:21:35] 2025-06-03 11:13:22,835 | INFO     | all workflow threads have been joined
[2025-06-03 13:21:35] 2025-06-03 11:13:22,835 | INFO     | end of generic workflow (traces error code: 0)
[2025-06-03 13:21:35] 2025-06-03 11:13:22,835 | INFO     | traces error code: 0
[2025-06-03 13:21:35] 2025-06-03 11:13:22,836 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-06-03 13:21:35] 2025-06-03 11:13:22,959 [wrapper] ==== pilot stdout END ====
[2025-06-03 13:21:35] 2025-06-03 11:13:22,962 [wrapper] ==== wrapper stdout RESUME ====
[2025-06-03 13:21:35] 2025-06-03 11:13:22,964 [wrapper] pilotpid: 235481
[2025-06-03 13:21:35] 2025-06-03 11:13:22,966 [wrapper] Pilot exit status: 0
[2025-06-03 13:21:35] 2025-06-03 11:13:22,977 [wrapper] pandaids: 6666744851
[2025-06-03 13:21:35] 2025-06-03 11:13:23,030 [wrapper] cleanup supervisor_pilot  597849 235482
[2025-06-03 13:21:35] 2025-06-03 11:13:23,032 [wrapper] Test setup, not cleaning
[2025-06-03 13:21:35] 2025-06-03 11:13:23,035 [wrapper] apfmon messages muted
[2025-06-03 13:21:35] 2025-06-03 11:13:23,038 [wrapper] ==== wrapper stdout END ====
[2025-06-03 13:21:35] 2025-06-03 11:13:23,040 [wrapper] ==== wrapper stderr END ====
[2025-06-03 13:21:35]  *** Error codes and diagnostics ***
[2025-06-03 13:21:35]     "exeErrorCode": 0,
[2025-06-03 13:21:35]     "exeErrorDiag": "",
[2025-06-03 13:21:35]     "pilotErrorCode": 0,
[2025-06-03 13:21:35]     "pilotErrorDiag": "",
[2025-06-03 13:21:35]  *** Listing of results directory ***
[2025-06-03 13:21:35] total 419972
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc    495897 May 27 05:05 pilot3.tar.gz
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc      5111 May 27 05:14 queuedata.json
[2025-06-03 13:21:35] -rwx------ 1 boinc boinc     37140 May 27 05:15 runpilot2-wrapper.sh
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc       100 Jun  3 07:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-06-03 13:21:35] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 07:56 run_atlas
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc       105 Jun  3 07:56 job.xml
[2025-06-03 13:21:35] -rw-r--r-- 2 boinc boinc 225346191 Jun  3 08:32 EVNT.44871834._002421.pool.root.1
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc      6419 Jun  3 08:32 init_data.xml
[2025-06-03 13:21:35] drwxrwx--x 2 boinc boinc      4096 Jun  3 08:32 shared
[2025-06-03 13:21:35] -rw-r--r-- 2 boinc boinc    508877 Jun  3 08:32 input.tar.gz
[2025-06-03 13:21:35] -rw-r--r-- 2 boinc boinc     15093 Jun  3 08:32 start_atlas.sh
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc         0 Jun  3 08:32 boinc_lockfile
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc      2559 Jun  3 08:32 pandaJob.out
[2025-06-03 13:21:35] -rw------- 1 boinc boinc    986901 Jun  3 08:32 agis_schedconf.cvmfs.json
[2025-06-03 13:21:35] drwx------ 4 boinc boinc      4096 Jun  3 08:32 pilot3
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc       530 Jun  3 13:12 boinc_task_state.xml
[2025-06-03 13:21:35] -rw------- 1 boinc boinc 197057172 Jun  3 13:12 HITS.44871837._061346.pool.root.1
[2025-06-03 13:21:35] -rw------- 1 boinc boinc      1036 Jun  3 13:12 memory_monitor_summary.json
[2025-06-03 13:21:35] -rw------- 1 boinc boinc        95 Jun  3 13:12 pilot_heartbeat.json
[2025-06-03 13:21:35] -rw------- 1 boinc boinc   1603667 Jun  3 13:12 agis_ddmendpoints.agis.ALL.json
[2025-06-03 13:21:35] -rw------- 1 boinc boinc    352644 Jun  3 13:12 log.44871837._061346.job.log.tgz.1
[2025-06-03 13:21:35] -rw------- 1 boinc boinc      7742 Jun  3 13:13 heartbeat.json
[2025-06-03 13:21:35] -rw------- 1 boinc boinc      4436 Jun  3 13:13 pilotlog.txt
[2025-06-03 13:21:35] -rw------- 1 boinc boinc   1551384 Jun  3 13:13 log.44871837._061346.job.log.1
[2025-06-03 13:21:35] -rw------- 1 boinc boinc       357 Jun  3 13:13 output.list
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc       620 Jun  3 13:13 runtime_log
[2025-06-03 13:21:35] -rw------- 1 boinc boinc   1925120 Jun  3 13:13 result.tar.gz
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc      9026 Jun  3 13:13 runtime_log.err
[2025-06-03 13:21:35] -rw------- 1 boinc boinc       665 Jun  3 13:13 0gRLDmLyzd7n9Rq4apOajLDm4fhM0noT9bVof3QYDm3ERKDmK40xMo.diag
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc        27 Jun  3 13:21 wrapper_checkpoint.txt
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc      8192 Jun  3 13:21 boinc_mmap_file
[2025-06-03 13:21:35] -rw-r--r-- 1 boinc boinc     20928 Jun  3 13:21 stderr.txt
[2025-06-03 13:21:35] HITS file was successfully produced:
[2025-06-03 13:21:35] -rw------- 1 boinc boinc 197057172 Jun  3 13:12 shared/HITS.pool.root.1
[2025-06-03 13:21:35]  *** Contents of shared directory: ***
[2025-06-03 13:21:35] total 414912
[2025-06-03 13:21:35] -rw-r--r-- 2 boinc boinc 225346191 Jun  3 08:32 ATLAS.root_0
[2025-06-03 13:21:35] -rw-r--r-- 2 boinc boinc    508877 Jun  3 08:32 input.tar.gz
[2025-06-03 13:21:35] -rw-r--r-- 2 boinc boinc     15093 Jun  3 08:32 start_atlas.sh
[2025-06-03 13:21:35] -rw------- 1 boinc boinc 197057172 Jun  3 13:12 HITS.pool.root.1
[2025-06-03 13:21:35] -rw------- 1 boinc boinc   1925120 Jun  3 13:13 result.tar.gz
13:21:37 (231865): run_atlas exited; CPU time 65551.283863
13:21:37 (231865): called boinc_finish(0)

</stderr_txt>
]]>

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