Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-28 03:20:01 (3312): Detected: vboxwrapper 26206
2025-05-28 03:20:01 (3312): Detected: BOINC client v7.16.20
2025-05-28 03:20:01 (3312): Detected: VirtualBox VboxManage Interface (Version: 6.0.14)
2025-05-28 03:20:02 (3312): Successfully copied 'init_data.xml' to the shared directory.
2025-05-28 03:20:02 (3312): Create VM. (boinc_70c1d8c4593b1827, slot#2)
2025-05-28 03:20:03 (3312): Setting Memory Size for VM. (4800MB)
2025-05-28 03:20:03 (3312): Setting CPU Count for VM. (8)
2025-05-28 03:20:03 (3312): Setting Chipset Options for VM.
2025-05-28 03:20:03 (3312): Setting Graphics Controller Options for VM.
2025-05-28 03:20:04 (3312): Setting Boot Options for VM.
2025-05-28 03:20:04 (3312): Setting Network Configuration for NAT.
2025-05-28 03:20:04 (3312): Enabling VM Network Access.
2025-05-28 03:20:04 (3312): Disabling USB Support for VM.
2025-05-28 03:20:05 (3312): Disabling COM Port Support for VM.
2025-05-28 03:20:05 (3312): Disabling LPT Port Support for VM.
2025-05-28 03:20:05 (3312): Disabling Audio Support for VM.
2025-05-28 03:20:06 (3312): Disabling Clipboard Support for VM.
2025-05-28 03:20:06 (3312): Disabling Drag and Drop Support for VM.
2025-05-28 03:20:06 (3312): Adding storage controller(s) to VM.
2025-05-28 03:20:06 (3312): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-28 03:20:07 (3312): Adding VirtualBox Guest Additions to VM.
2025-05-28 03:20:08 (3312): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-28 03:20:08 (3312): forwarding host port 60464 to guest port 80
2025-05-28 03:20:08 (3312): Enabling remote desktop for VM.
2025-05-28 03:20:08 (3312): Required extension pack not installed, remote desktop not enabled.
2025-05-28 03:20:08 (3312): Enabling shared directory for VM.
2025-05-28 03:20:09 (3312): Starting VM using VBoxManage interface. (boinc_70c1d8c4593b1827, slot#2)
2025-05-28 03:20:12 (3312): Successfully started VM. (PID = '8596')
2025-05-28 03:20:12 (3312): Reporting VM Process ID to BOINC.
2025-05-28 03:20:12 (3312): Guest Log: BIOS: VirtualBox 6.0.14
2025-05-28 03:20:12 (3312): Guest Log: CPUID EDX: 0x178bfbff
2025-05-28 03:20:12 (3312): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-28 03:20:12 (3312): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-28 03:20:12 (3312): Detected: Web Application Enabled (http://localhost:60464)
2025-05-28 03:20:12 (3312): Preference change detected
2025-05-28 03:20:12 (3312): Setting CPU throttle for VM. (80%)
2025-05-28 03:20:13 (3312): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-28 03:20:14 (3312): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-28 03:20:14 (3312): Guest Log: BIOS: Booting from Hard Disk...
2025-05-28 03:20:17 (3312): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-28 03:20:17 (3312): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-28 03:20:17 (3312): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-28 03:20:21 (3312): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-28 03:20:21 (3312): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-28 03:20:26 (3312): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-28 03:20:26 (3312): Guest Log: 00:00:00.000139 main     Log opened 2025-05-28T03:20:25.331458000Z
2025-05-28 03:20:26 (3312): Guest Log: 00:00:00.000220 main     OS Product: Linux
2025-05-28 03:20:26 (3312): Guest Log: 00:00:00.000290 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-28 03:20:26 (3312): Guest Log: 00:00:00.000315 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-28 03:20:26 (3312): Guest Log: 00:00:00.000336 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-28 03:20:26 (3312): Guest Log: 00:00:00.000337 main     Process ID: 1364
2025-05-28 03:20:26 (3312): Guest Log: 00:00:00.000337 main     Package type: LINUX_64BITS_GENERIC
2025-05-28 03:20:26 (3312): Guest Log: 00:00:00.000974 main     5.2.32 r132073 started. Verbose level = 0
2025-05-28 03:20:26 (3312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-28 03:20:26 (3312): Guest Log: [INFO] Mounting shared directory
2025-05-28 03:20:26 (3312): Guest Log: [INFO] Checking for init_data.xml
2025-05-28 03:20:29 (3312): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-28 03:20:29 (3312): Guest Log: [INFO] Detected branch: prod
2025-05-28 03:20:29 (3312): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-28 03:20:29 (3312): Guest Log: Copying input files
2025-05-28 03:20:30 (3312): Guest Log: Copied input files into RunAtlas.
2025-05-28 03:20:30 (3312): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-28 03:20:30 (3312): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-28 03:20:30 (3312): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-28 03:20:30 (3312): Guest Log: Further information can be found at the LHC@home message board.
2025-05-28 03:20:36 (3312): Guest Log: 00:00:10.011154 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 564 566 000ns (GuestNow=1 748 395 236 768 941 000 ns GuestLast=1 748 402 425 333 507 000 ns fSetTimeLastLoop=true )
2025-05-28 03:20:37 (3312): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-28 03:20:37 (3312): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-28 03:20:37 (3312): Guest Log: 2.6.3.0 1639 0 30148 146500 4 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-05-28 03:20:38 (3312): Guest Log: copied the webapp to /var/www
2025-05-28 03:20:38 (3312): Guest Log: ATHENA_PROC_NUMBER=8
2025-05-28 03:20:38 (3312): Guest Log: ATHENA_CORE_NUMBER=8
2025-05-28 03:20:38 (3312): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-28 03:20:38 (3312): Guest Log:  *** Starting ATLAS job. (PandaID=6666711221 taskID=44871837) ***
2025-05-28 05:00:16 (3312): Status Report: Elapsed Time: '6000.000000'
2025-05-28 05:00:16 (3312): Status Report: CPU Time: '35617.828125'
2025-05-28 05:28:31 (3312): Guest Log:  *** Job finished ***
2025-05-28 05:28:31 (3312): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:20,582 | INFO     | [data] copytool_out thread has finished
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:20,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:24,911 | INFO     | [data] queue_monitor thread has finished
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:26,093 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139774087034688)>', '<ExcThread(monitor, started 139772966188800)>']
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:26,907 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:26,907 | INFO     | [monitor] control thread has ended
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,100 | INFO     | all workflow threads have been joined
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,100 | INFO     | end of generic workflow (traces error code: 0)
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,100 | INFO     | traces error code: 0
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,182 [wrapper] ==== pilot stdout END ====
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,186 [wrapper] ==== wrapper stdout RESUME ====
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,190 [wrapper] pilotpid: 5989
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,193 [wrapper] Pilot exit status: 0
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,249 [wrapper] pandaids: 6666711221
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,276 [wrapper] cleanup supervisor_pilot  3734 5990
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,280 [wrapper] Test setup, not cleaning
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,284 [wrapper] apfmon messages muted
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,288 [wrapper] ==== wrapper stdout END ====
2025-05-28 05:28:31 (3312): Guest Log: 2025-05-28 03:28:31,291 [wrapper] ==== wrapper stderr END ====
2025-05-28 05:28:31 (3312): Guest Log:  *** Error codes and diagnostics ***
2025-05-28 05:28:31 (3312): Guest Log:     "exeErrorCode": 0,
2025-05-28 05:28:31 (3312): Guest Log:     "exeErrorDiag": "",
2025-05-28 05:28:31 (3312): Guest Log:     "pilotErrorCode": 0,
2025-05-28 05:28:31 (3312): Guest Log:     "pilotErrorDiag": "",
2025-05-28 05:28:31 (3312): Guest Log:  *** Listing of results directory ***
2025-05-28 05:28:31 (3312): Guest Log: total 188744
2025-05-28 05:28:31 (3312): Guest Log: -rw-r--r--. 1 atlas atlas    495897 May 27 03:05 pilot3.tar.gz
2025-05-28 05:28:31 (3312): Guest Log: -rwx------. 1 atlas atlas     37140 May 27 03:06 runpilot2-wrapper.sh
2025-05-28 05:28:31 (3312): Guest Log: -rw-r--r--. 1 atlas atlas      5111 May 27 03:06 queuedata.json
2025-05-28 05:28:31 (3312): Guest Log: -rwxr-xr-x. 1 atlas atlas     15093 May 28 01:20 start_atlas.sh
2025-05-28 05:28:31 (3312): Guest Log: -rwxr-xr-x. 1 atlas atlas    508877 May 28 01:20 input.tar.gz
2025-05-28 05:28:31 (3312): Guest Log: -rwxr-xr-x. 1 atlas atlas      9079 May 28 01:20 init_data.xml
2025-05-28 05:28:31 (3312): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 28 01:20 EVNT.44871834._002415.pool.root.1 -> /data/./ATLAS.root_0
2025-05-28 05:28:31 (3312): Guest Log: -rw-r--r--. 1 atlas atlas      2559 May 28 01:20 pandaJob.out
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas    991169 May 28 01:21 agis_schedconf.cvmfs.json
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas   1603667 May 28 01:21 agis_ddmendpoints.agis.ALL.json
2025-05-28 05:28:31 (3312): Guest Log: drwx------. 4 atlas atlas      4096 May 28 01:21 pilot3
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas 187676469 May 28 03:27 HITS.44871837._061163.pool.root.1
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas      1027 May 28 03:27 memory_monitor_summary.json
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas    309574 May 28 03:28 log.44871837._061163.job.log.tgz.1
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas        95 May 28 03:28 pilot_heartbeat.json
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas      7708 May 28 03:28 heartbeat.json
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas      4536 May 28 03:28 pilotlog.txt
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas    603233 May 28 03:28 log.44871837._061163.job.log.1
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas       357 May 28 03:28 output.list
2025-05-28 05:28:31 (3312): Guest Log: -rw-r--r--. 1 atlas atlas       620 May 28 03:28 runtime_log
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas    931840 May 28 03:28 result.tar.gz
2025-05-28 05:28:31 (3312): Guest Log: -rw-r--r--. 1 atlas atlas      8631 May 28 03:28 runtime_log.err
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas       665 May 28 03:28 1Q2MDmJpzd7n9Rq4apOajLDm4fhM0noT9bVof3QYDmSDRKDmNaH5ln.diag
2025-05-28 05:28:31 (3312): Guest Log: Looking for outputfile HITS.44871837._061163.pool.root.1
2025-05-28 05:28:31 (3312): Guest Log: HITS file was successfully produced
2025-05-28 05:28:31 (3312): Guest Log: -rw-------. 1 atlas atlas 187676469 May 28 03:27 /home/atlas/RunAtlas/HITS.44871837._061163.pool.root.1
2025-05-28 05:28:32 (3312): Guest Log: Successfully finished the ATLAS job!
2025-05-28 05:28:32 (3312): Guest Log: Copying the results back to the shared directory!
2025-05-28 05:28:32 (3312): Guest Log:  *** Contents of shared directory: ***
2025-05-28 05:28:32 (3312): Guest Log: total 404532
2025-05-28 05:28:32 (3312): Guest Log: -rwxrwxrwx. 1 root root 225085692 May 28 01:20 ATLAS.root_0
2025-05-28 05:28:32 (3312): Guest Log: -rwxrwxrwx. 1 root root 187676469 May 28  2025 HITS.pool.root.1
2025-05-28 05:28:32 (3312): Guest Log: -rwxrwxrwx. 1 root root      9079 May 28 01:20 init_data.xml
2025-05-28 05:28:32 (3312): Guest Log: -rwxrwxrwx. 1 root root    508877 May 27 09:44 input.tar.gz
2025-05-28 05:28:32 (3312): Guest Log: -rwxrwxrwx. 1 root root    931840 May 28  2025 result.tar.gz
2025-05-28 05:28:32 (3312): Guest Log: -rwxrwxrwx. 1 root root     15093 May 27 09:44 start_atlas.sh
2025-05-28 05:28:32 (3312): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-28 05:28:32 (3312): VM Completion File Detected.
2025-05-28 05:28:32 (3312): Powering off VM.
2025-05-28 05:28:33 (3312): Successfully stopped VM.
2025-05-28 05:28:33 (3312): Deregistering VM. (boinc_70c1d8c4593b1827, slot#2)
2025-05-28 05:28:33 (3312): Removing network bandwidth throttle group from VM.
2025-05-28 05:28:33 (3312): Removing VM from VirtualBox.
05:28:38 (3312): called boinc_finish(0)

</stderr_txt>
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