Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
19:06:06 (820413): wrapper (7.7.26015): starting
19:06:06 (820413): wrapper: running run_atlas (--nthreads 4)
[2025-05-28 19:06:06] Arguments: --nthreads 4
[2025-05-28 19:06:06] Threads: 4
[2025-05-28 19:06:06] Checking for CVMFS
[2025-05-28 19:06:06] No cvmfs_config command found, will try listing directly
[2025-05-28 19:06:06] CVMFS is ok
[2025-05-28 19:06:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-28 19:06:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-28 19:06:06] Further information can be found at the LHC@home message board.
[2025-05-28 19:06:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 19:06:06] Checking for apptainer binary...
[2025-05-28 19:06:06] which: no apptainer in ((null))
[2025-05-28 19:06:06] apptainer is not installed, using version from CVMFS
[2025-05-28 19:06:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 19:06:06] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-05-28 19:06:06] apptainer works
[2025-05-28 19:06:06] Set ATHENA_PROC_NUMBER=4
[2025-05-28 19:06:06] Set ATHENA_CORE_NUMBER=4
[2025-05-28 19:06:06] Starting ATLAS job with PandaID=6666596653
[2025-05-28 19:06:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:27:41 (251455): wrapper (7.7.26015): starting
08:27:41 (251455): wrapper: running run_atlas (--nthreads 4)
[2025-05-29 08:27:41] Arguments: --nthreads 4
[2025-05-29 08:27:41] Threads: 4
[2025-05-29 08:27:41] This job has been restarted, cleaning up previous attempt
[2025-05-29 08:27:41] Checking for CVMFS
[2025-05-29 08:27:41] No cvmfs_config command found, will try listing directly
[2025-05-29 08:27:41] CVMFS is ok
[2025-05-29 08:27:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-05-29 08:27:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-05-29 08:27:41] Further information can be found at the LHC@home message board.
[2025-05-29 08:27:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-29 08:27:41] Checking for apptainer binary...
[2025-05-29 08:27:41] which: no apptainer in ((null))
[2025-05-29 08:27:41] apptainer is not installed, using version from CVMFS
[2025-05-29 08:27:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-29 08:27:41] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-05-29 08:27:41] apptainer works
[2025-05-29 08:27:41] Set ATHENA_PROC_NUMBER=4
[2025-05-29 08:27:41] Set ATHENA_CORE_NUMBER=4
[2025-05-29 08:27:41] Starting ATLAS job with PandaID=6666596653
[2025-05-29 08:27:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-29 08:31:24] Job failed
[2025-05-29 08:31:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-05-29 08:31:24] ++ pwd
[2025-05-29 08:31:24] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot24/slots/0/
[2025-05-29 08:31:24] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot24/slots/0/
[2025-05-29 08:31:24] + mv ATLAS.root_0 EVNT.44871834._002404.pool.root.1
[2025-05-29 08:31:24] mv: 'ATLAS.root_0' and 'EVNT.44871834._002404.pool.root.1' are the same file
[2025-05-29 08:31:24] + tar --strip-components=5 -xvf input.tar.gz
[2025-05-29 08:31:24] + umask 077
[2025-05-29 08:31:24] ++ date +%s
[2025-05-29 08:31:24] + ACCOUNTING_STARTTIME=1748500062
[2025-05-29 08:31:24] + echo 'Detecting resource accounting method available for the job.'
[2025-05-29 08:31:24] Detecting resource accounting method available for the job.
[2025-05-29 08:31:24] + JOB_ACCOUNTING=
[2025-05-29 08:31:24] + command -v arc-job-cgroup
[2025-05-29 08:31:24] + '[' -z '' ']'
[2025-05-29 08:31:24] + GNU_TIME=/usr/bin/time
[2025-05-29 08:31:24] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-05-29 08:31:24] Looking for /usr/bin/time tool for accounting measurements
[2025-05-29 08:31:24] + '[' '!' -z /usr/bin/time ']'
[2025-05-29 08:31:24] + /usr/bin/time --version
[2025-05-29 08:31:24] + echo 'GNU time found and will be used for job accounting.'
[2025-05-29 08:31:24] GNU time found and will be used for job accounting.
[2025-05-29 08:31:24] + JOB_ACCOUNTING=gnutime
[2025-05-29 08:31:24] + '[' -z gnutime ']'
[2025-05-29 08:31:24] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-29 08:31:24] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-05-29 08:31:24] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666596653.out
[2025-05-29 08:31:24] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666596653.out
[2025-05-29 08:31:24] + export PILOT_NOKILL=YES
[2025-05-29 08:31:24] + PILOT_NOKILL=YES
[2025-05-29 08:31:24] + export GRID_GLOBAL_JOBID=KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-05-29 08:31:24] + GRID_GLOBAL_JOBID=KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-05-29 08:31:24] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-05-29 08:31:24] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-05-29 08:31:24] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-29 08:31:24] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-05-29 08:31:24] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-05-29 08:31:24] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-05-29 08:31:24] ++ pwd
[2025-05-29 08:31:24] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot24/slots/0
[2025-05-29 08:31:24] + RUNTIME_JOB_STDIN=/dev/null
[2025-05-29 08:31:24] ++ pwd
[2025-05-29 08:31:24] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot24/slots/0/log.44871837._060848.job.log.1
[2025-05-29 08:31:24] ++ pwd
[2025-05-29 08:31:24] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot24/slots/0/log.44871837._060848.job.log.1
[2025-05-29 08:31:24] ++ pwd
[2025-05-29 08:31:24] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot24/slots/0.diag
[2025-05-29 08:31:24] + '[' '!' -z '' ']'
[2025-05-29 08:31:24] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-05-29 08:31:24] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-05-29 08:31:24] + RUNTIME_FRONTEND_SEES_NODE=
[2025-05-29 08:31:24] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-05-29 08:31:24] + '[' '!' -z '' ']'
[2025-05-29 08:31:24] + '[' -z yes ']'
[2025-05-29 08:31:24] ++ pwd
[2025-05-29 08:31:24] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag
[2025-05-29 08:31:24] + runtimeenvironments=
[2025-05-29 08:31:24] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-29 08:31:24] + RTE_function_0 1
[2025-05-29 08:31:24] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 08:31:24] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 08:31:24] + export BOINC_APP=ATLAS
[2025-05-29 08:31:24] + BOINC_APP=ATLAS
[2025-05-29 08:31:24] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 08:31:24] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 08:31:24] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 08:31:24] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 08:31:24] + '[' -z 1 ']'
[2025-05-29 08:31:24] + '[' 1 == 1 ']'
[2025-05-29 08:31:24] + shift
[2025-05-29 08:31:24] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot24/slots/0/
[2025-05-29 08:31:24] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot24/slots/0/
[2025-05-29 08:31:24] + '[' 0 -ne 0 ']'
[2025-05-29 08:31:24] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-05-29 08:31:24] + '[' -f /etc/os-release ']'
[2025-05-29 08:31:24] +++ cat /etc/os-release
[2025-05-29 08:31:24] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-05-29 08:31:24] +++ NAME='CentOS Linux'
[2025-05-29 08:31:24] +++ VERSION='7 (Core)'
[2025-05-29 08:31:24] +++ ID=centos
[2025-05-29 08:31:24] +++ ID_LIKE='rhel fedora'
[2025-05-29 08:31:24] +++ VERSION_ID=7
[2025-05-29 08:31:24] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-05-29 08:31:24] +++ ANSI_COLOR='0;31'
[2025-05-29 08:31:24] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-05-29 08:31:24] +++ HOME_URL=https://www.centos.org/
[2025-05-29 08:31:24] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-05-29 08:31:24] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-05-29 08:31:24] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-05-29 08:31:24] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-05-29 08:31:24] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-05-29 08:31:24] ++ echo 'CentOS Linux 7 (Core)'
[2025-05-29 08:31:24] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-05-29 08:31:24] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-05-29 08:31:24] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-05-29 08:31:24] + HOME=/scratch/boinc/var/slot24/slots/0
[2025-05-29 08:31:24] + export HOME
[2025-05-29 08:31:24] + cd /scratch/boinc/var/slot24/slots/0
[2025-05-29 08:31:24] + '[' '!' -z '' ']'
[2025-05-29 08:31:24] + '[' -z '' ']'
[2025-05-29 08:31:24] ++ /bin/hostname -f
[2025-05-29 08:31:24] + nodename=skurut14.grid.cesnet.cz
[2025-05-29 08:31:24] + echo nodename=skurut14.grid.cesnet.cz
[2025-05-29 08:31:24] + echo Processors=2
[2025-05-29 08:31:24] + echo Nodecount=1
[2025-05-29 08:31:24] + echo Benchmark=HEPSPEC:1.0
[2025-05-29 08:31:24] + executable=./runpilot2-wrapper.sh
[2025-05-29 08:31:24] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-05-29 08:31:24] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-05-29 08:31:24] ++ head -n 1
[2025-05-29 08:31:24] ++ tr -d '\0'
[2025-05-29 08:31:24] + line1='#!/bin/bash'
[2025-05-29 08:31:24] ++ echo '#!/bin/bash'
[2025-05-29 08:31:24] ++ sed -n 's/^#! *//p'
[2025-05-29 08:31:24] + shebang=/bin/bash
[2025-05-29 08:31:24] ++ echo /bin/bash
[2025-05-29 08:31:24] ++ awk '{print $1}'
[2025-05-29 08:31:24] + interpreter=/bin/bash
[2025-05-29 08:31:24] + '[' /bin/bash = /usr/bin/env ']'
[2025-05-29 08:31:24] + '[' x/bin/bash = x ']'
[2025-05-29 08:31:24] + type /bin/bash
[2025-05-29 08:31:24] + '[' xgnutime = xgnutime ']'
[2025-05-29 08:31:24] + /usr/bin/time -o /scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-05-29 08:31:24] + RESULT=2
[2025-05-29 08:31:24] + sed -i -e /nodename=/d /scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag
[2025-05-29 08:31:24] ++ grep domain_name init_data.xml
[2025-05-29 08:31:24] ++ awk -F '>' '{print $2}'
[2025-05-29 08:31:24] ++ awk -F '<' '{print $1}'
[2025-05-29 08:31:24] ++ sed -e 's# #_#g'
[2025-05-29 08:31:24] + hostname=skurut14.grid.cesnet.cz
[2025-05-29 08:31:24] ++ grep user_name init_data.xml
[2025-05-29 08:31:24] ++ awk -F '>' '{print $2}'
[2025-05-29 08:31:24] ++ awk -F '<' '{print $1}'
[2025-05-29 08:31:24] ++ sed -e 's# #_#g'
[2025-05-29 08:31:24] + username=praguelcg2
[2025-05-29 08:31:24] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-05-29 08:31:24] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-05-29 08:31:24] + '[' -n 4 ']'
[2025-05-29 08:31:24] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag
[2025-05-29 08:31:24] + echo exitcode=2
[2025-05-29 08:31:24] + runtimeenvironments=
[2025-05-29 08:31:24] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-05-29 08:31:24] + RTE_function_0 2
[2025-05-29 08:31:24] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 08:31:24] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-05-29 08:31:24] + export BOINC_APP=ATLAS
[2025-05-29 08:31:24] + BOINC_APP=ATLAS
[2025-05-29 08:31:24] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 08:31:24] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-05-29 08:31:24] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 08:31:24] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-05-29 08:31:24] + '[' -z 2 ']'
[2025-05-29 08:31:24] + '[' 2 == 1 ']'
[2025-05-29 08:31:24] + '[' 0 -ne 0 ']'
[2025-05-29 08:31:24] + echo 'zip all output files'
[2025-05-29 08:31:24] + flist='*.diag '
[2025-05-29 08:31:24] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-05-29 08:31:24] + '[' -e ./heartbeat.json ']'
[2025-05-29 08:31:24] + flist='*.diag  ./heartbeat.json'
[2025-05-29 08:31:24] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-05-29 08:31:24] + '[' -e ./output.list ']'
[2025-05-29 08:31:24] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-05-29 08:31:24] + '[' -e ./log.44871837._060848.job.log.1 ']'
[2025-05-29 08:31:24] + flist='*.diag  ./heartbeat.json ./log.44871837._060848.job.log.1'
[2025-05-29 08:31:24] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-05-29 08:31:24] + '[' -e ./log.44871837._060848.job.log.1 ']'
[2025-05-29 08:31:24] + flist='*.diag  ./heartbeat.json ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1'
[2025-05-29 08:31:24] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-05-29 08:31:24] + '[' -e ./gmlog/ ']'
[2025-05-29 08:31:24] + '[' -f output.list ']'
[2025-05-29 08:31:24] + tar cvf result.tar.gz KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag ./heartbeat.json ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1
[2025-05-29 08:31:24] + '[' xgnutime = xcgroup ']'
[2025-05-29 08:31:24] + '[' -n '' ']'
[2025-05-29 08:31:24] + '[' -n '' ']'
[2025-05-29 08:31:24] ++ date +%s
[2025-05-29 08:31:24] + ACCOUNTING_ENDTIME=1748500252
[2025-05-29 08:31:24] ++ date -d '1970-01-01 UTC 1748500062 seconds' +%Y%m%d%H%M%SZ
[2025-05-29 08:31:24] + echo LRMSStartTime=20250529082742Z
[2025-05-29 08:31:24] ++ date -d '1970-01-01 UTC 1748500252 seconds' +%Y%m%d%H%M%SZ
[2025-05-29 08:31:24] + echo LRMSEndTime=20250529083052Z
[2025-05-29 08:31:24] + echo walltime=190
[2025-05-29 08:31:24] + echo exitcode=2
[2025-05-29 08:31:24] + exit 2
[2025-05-29 08:31:24] ./pilotlog.txt
[2025-05-29 08:31:24] ./runtime_log.err
[2025-05-29 08:31:24] ./PanDA_Pilot-6666596653/prmon.log
[2025-05-29 08:31:24] ./PanDA_Pilot-6666596653/pilotlog.txt
[2025-05-29 08:31:24] ./PanDA_Pilot-6666596653/PoolFileCatalog.xml
[2025-05-29 08:31:24] ./PanDA_Pilot-6666596653/log.EVNTtoHITS
[2025-05-29 08:31:24] ./runtime_log
[2025-05-29 08:31:24] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-05-29 08:31:24] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-05-29 08:31:24] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-05-29 08:31:24] ./pilot3/pilot/util/loggingsupport.py
[2025-05-29 08:31:24] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-05-29 08:31:24] ./pilot3/pilot/util/realtimelogger.py
[2025-05-29 08:31:24] ./log.44871837._060848.job.log.1
08:43:10 (20965): wrapper (7.7.26015): starting
08:43:10 (20965): wrapper: running run_atlas (--nthreads 4)
[2025-06-03 08:43:10] Arguments: --nthreads 4
[2025-06-03 08:43:10] Threads: 4
[2025-06-03 08:43:10] This job has been restarted, cleaning up previous attempt
[2025-06-03 08:43:10] Checking for CVMFS
[2025-06-03 08:43:10] No cvmfs_config command found, will try listing directly
[2025-06-03 08:43:10] CVMFS is ok
[2025-06-03 08:43:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-03 08:43:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-03 08:43:10] Further information can be found at the LHC@home message board.
[2025-06-03 08:43:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-03 08:43:10] Checking for apptainer binary...
[2025-06-03 08:43:10] which: no apptainer in ((null))
[2025-06-03 08:43:10] apptainer is not installed, using version from CVMFS
[2025-06-03 08:43:10] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-03 08:43:10] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-03 08:43:10] apptainer works
[2025-06-03 08:43:10] Set ATHENA_PROC_NUMBER=4
[2025-06-03 08:43:10] Set ATHENA_CORE_NUMBER=4
[2025-06-03 08:43:10] Starting ATLAS job with PandaID=6666596653
[2025-06-03 08:43:10] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-03 08:46:22] Job failed
[2025-06-03 08:46:22] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-03 08:46:22] ++ pwd
[2025-06-03 08:46:22] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot24/slots/0/
[2025-06-03 08:46:22] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot24/slots/0/
[2025-06-03 08:46:22] + mv ATLAS.root_0 EVNT.44871834._002404.pool.root.1
[2025-06-03 08:46:22] mv: 'ATLAS.root_0' and 'EVNT.44871834._002404.pool.root.1' are the same file
[2025-06-03 08:46:22] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-03 08:46:22] + umask 077
[2025-06-03 08:46:22] ++ date +%s
[2025-06-03 08:46:22] + ACCOUNTING_STARTTIME=1748932990
[2025-06-03 08:46:22] + echo 'Detecting resource accounting method available for the job.'
[2025-06-03 08:46:22] Detecting resource accounting method available for the job.
[2025-06-03 08:46:22] + JOB_ACCOUNTING=
[2025-06-03 08:46:22] + command -v arc-job-cgroup
[2025-06-03 08:46:22] + '[' -z '' ']'
[2025-06-03 08:46:22] + GNU_TIME=/usr/bin/time
[2025-06-03 08:46:22] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-03 08:46:22] Looking for /usr/bin/time tool for accounting measurements
[2025-06-03 08:46:22] + '[' '!' -z /usr/bin/time ']'
[2025-06-03 08:46:22] + /usr/bin/time --version
[2025-06-03 08:46:22] + echo 'GNU time found and will be used for job accounting.'
[2025-06-03 08:46:22] GNU time found and will be used for job accounting.
[2025-06-03 08:46:22] + JOB_ACCOUNTING=gnutime
[2025-06-03 08:46:22] + '[' -z gnutime ']'
[2025-06-03 08:46:22] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 08:46:22] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-03 08:46:22] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666596653.out
[2025-06-03 08:46:22] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666596653.out
[2025-06-03 08:46:22] + export PILOT_NOKILL=YES
[2025-06-03 08:46:22] + PILOT_NOKILL=YES
[2025-06-03 08:46:22] + export GRID_GLOBAL_JOBID=KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-06-03 08:46:22] + GRID_GLOBAL_JOBID=KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-06-03 08:46:22] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-06-03 08:46:22] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-06-03 08:46:22] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 08:46:22] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-03 08:46:22] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 08:46:22] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-03 08:46:22] ++ pwd
[2025-06-03 08:46:22] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot24/slots/0
[2025-06-03 08:46:22] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-03 08:46:22] ++ pwd
[2025-06-03 08:46:22] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot24/slots/0/log.44871837._060848.job.log.1
[2025-06-03 08:46:22] ++ pwd
[2025-06-03 08:46:22] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot24/slots/0/log.44871837._060848.job.log.1
[2025-06-03 08:46:22] ++ pwd
[2025-06-03 08:46:22] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot24/slots/0.diag
[2025-06-03 08:46:22] + '[' '!' -z '' ']'
[2025-06-03 08:46:22] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-03 08:46:22] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-03 08:46:22] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-03 08:46:22] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-03 08:46:22] + '[' '!' -z '' ']'
[2025-06-03 08:46:22] + '[' -z yes ']'
[2025-06-03 08:46:22] ++ pwd
[2025-06-03 08:46:22] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag
[2025-06-03 08:46:22] + runtimeenvironments=
[2025-06-03 08:46:22] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 08:46:22] + RTE_function_0 1
[2025-06-03 08:46:22] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 08:46:22] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 08:46:22] + export BOINC_APP=ATLAS
[2025-06-03 08:46:22] + BOINC_APP=ATLAS
[2025-06-03 08:46:22] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 08:46:22] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 08:46:22] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 08:46:22] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 08:46:22] + '[' -z 1 ']'
[2025-06-03 08:46:22] + '[' 1 == 1 ']'
[2025-06-03 08:46:22] + shift
[2025-06-03 08:46:22] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot24/slots/0/
[2025-06-03 08:46:22] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot24/slots/0/
[2025-06-03 08:46:22] + '[' 0 -ne 0 ']'
[2025-06-03 08:46:22] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-03 08:46:22] + '[' -f /etc/os-release ']'
[2025-06-03 08:46:22] +++ cat /etc/os-release
[2025-06-03 08:46:22] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-03 08:46:22] +++ NAME='CentOS Linux'
[2025-06-03 08:46:22] +++ VERSION='7 (Core)'
[2025-06-03 08:46:22] +++ ID=centos
[2025-06-03 08:46:22] +++ ID_LIKE='rhel fedora'
[2025-06-03 08:46:22] +++ VERSION_ID=7
[2025-06-03 08:46:22] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-03 08:46:22] +++ ANSI_COLOR='0;31'
[2025-06-03 08:46:22] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-03 08:46:22] +++ HOME_URL=https://www.centos.org/
[2025-06-03 08:46:22] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-03 08:46:22] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-03 08:46:22] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-03 08:46:22] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-03 08:46:22] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-03 08:46:22] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-03 08:46:22] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-03 08:46:22] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-03 08:46:22] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-03 08:46:22] + HOME=/scratch/boinc/var/slot24/slots/0
[2025-06-03 08:46:22] + export HOME
[2025-06-03 08:46:22] + cd /scratch/boinc/var/slot24/slots/0
[2025-06-03 08:46:22] + '[' '!' -z '' ']'
[2025-06-03 08:46:22] + '[' -z '' ']'
[2025-06-03 08:46:22] ++ /bin/hostname -f
[2025-06-03 08:46:22] + nodename=skurut14.grid.cesnet.cz
[2025-06-03 08:46:22] + echo nodename=skurut14.grid.cesnet.cz
[2025-06-03 08:46:22] + echo Processors=2
[2025-06-03 08:46:22] + echo Nodecount=1
[2025-06-03 08:46:22] + echo Benchmark=HEPSPEC:1.0
[2025-06-03 08:46:22] + executable=./runpilot2-wrapper.sh
[2025-06-03 08:46:22] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-03 08:46:22] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-03 08:46:22] ++ head -n 1
[2025-06-03 08:46:22] ++ tr -d '\0'
[2025-06-03 08:46:22] + line1='#!/bin/bash'
[2025-06-03 08:46:22] ++ echo '#!/bin/bash'
[2025-06-03 08:46:22] ++ sed -n 's/^#! *//p'
[2025-06-03 08:46:22] + shebang=/bin/bash
[2025-06-03 08:46:22] ++ echo /bin/bash
[2025-06-03 08:46:22] ++ awk '{print $1}'
[2025-06-03 08:46:22] + interpreter=/bin/bash
[2025-06-03 08:46:22] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-03 08:46:22] + '[' x/bin/bash = x ']'
[2025-06-03 08:46:22] + type /bin/bash
[2025-06-03 08:46:22] + '[' xgnutime = xgnutime ']'
[2025-06-03 08:46:22] + /usr/bin/time -o /scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-03 08:46:22] + RESULT=2
[2025-06-03 08:46:22] + sed -i -e /nodename=/d /scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag
[2025-06-03 08:46:22] ++ grep domain_name init_data.xml
[2025-06-03 08:46:22] ++ awk -F '>' '{print $2}'
[2025-06-03 08:46:22] ++ awk -F '<' '{print $1}'
[2025-06-03 08:46:22] ++ sed -e 's# #_#g'
[2025-06-03 08:46:22] + hostname=skurut14.grid.cesnet.cz
[2025-06-03 08:46:22] ++ grep user_name init_data.xml
[2025-06-03 08:46:22] ++ awk -F '>' '{print $2}'
[2025-06-03 08:46:22] ++ awk -F '<' '{print $1}'
[2025-06-03 08:46:22] ++ sed -e 's# #_#g'
[2025-06-03 08:46:22] + username=praguelcg2
[2025-06-03 08:46:22] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-03 08:46:22] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-03 08:46:22] + '[' -n 4 ']'
[2025-06-03 08:46:22] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag
[2025-06-03 08:46:22] + echo exitcode=2
[2025-06-03 08:46:22] + runtimeenvironments=
[2025-06-03 08:46:22] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-03 08:46:22] + RTE_function_0 2
[2025-06-03 08:46:22] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 08:46:22] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-03 08:46:22] + export BOINC_APP=ATLAS
[2025-06-03 08:46:22] + BOINC_APP=ATLAS
[2025-06-03 08:46:22] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 08:46:22] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-03 08:46:22] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 08:46:22] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-03 08:46:22] + '[' -z 2 ']'
[2025-06-03 08:46:22] + '[' 2 == 1 ']'
[2025-06-03 08:46:22] + '[' 0 -ne 0 ']'
[2025-06-03 08:46:22] + echo 'zip all output files'
[2025-06-03 08:46:22] + flist='*.diag '
[2025-06-03 08:46:22] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-03 08:46:22] + '[' -e ./heartbeat.json ']'
[2025-06-03 08:46:22] + flist='*.diag  ./heartbeat.json'
[2025-06-03 08:46:22] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-03 08:46:22] + '[' -e ./output.list ']'
[2025-06-03 08:46:22] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-03 08:46:22] + '[' -e ./log.44871837._060848.job.log.1 ']'
[2025-06-03 08:46:22] + flist='*.diag  ./heartbeat.json ./log.44871837._060848.job.log.1'
[2025-06-03 08:46:22] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-03 08:46:22] + '[' -e ./log.44871837._060848.job.log.1 ']'
[2025-06-03 08:46:22] + flist='*.diag  ./heartbeat.json ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1'
[2025-06-03 08:46:22] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-03 08:46:22] + '[' -e ./gmlog/ ']'
[2025-06-03 08:46:22] + '[' -f output.list ']'
[2025-06-03 08:46:22] + tar cvf result.tar.gz KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag ./heartbeat.json ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1
[2025-06-03 08:46:22] + '[' xgnutime = xcgroup ']'
[2025-06-03 08:46:22] + '[' -n '' ']'
[2025-06-03 08:46:22] + '[' -n '' ']'
[2025-06-03 08:46:22] ++ date +%s
[2025-06-03 08:46:22] + ACCOUNTING_ENDTIME=1748933182
[2025-06-03 08:46:22] ++ date -d '1970-01-01 UTC 1748932990 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 08:46:22] + echo LRMSStartTime=20250603084310Z
[2025-06-03 08:46:22] ++ date -d '1970-01-01 UTC 1748933182 seconds' +%Y%m%d%H%M%SZ
[2025-06-03 08:46:22] + echo LRMSEndTime=20250603084622Z
[2025-06-03 08:46:22] + echo walltime=192
[2025-06-03 08:46:22] + echo exitcode=2
[2025-06-03 08:46:22] + exit 2
[2025-06-03 08:46:22] ./pilotlog.txt
[2025-06-03 08:46:22] ./runtime_log.err
[2025-06-03 08:46:22] ./PanDA_Pilot-6666596653/prmon.log
[2025-06-03 08:46:22] ./PanDA_Pilot-6666596653/pilotlog.txt
[2025-06-03 08:46:22] ./PanDA_Pilot-6666596653/PoolFileCatalog.xml
[2025-06-03 08:46:22] ./PanDA_Pilot-6666596653/log.EVNTtoHITS
[2025-06-03 08:46:22] ./runtime_log
[2025-06-03 08:46:22] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-03 08:46:22] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-03 08:46:22] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-03 08:46:22] ./pilot3/pilot/util/loggingsupport.py
[2025-06-03 08:46:22] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-03 08:46:22] ./pilot3/pilot/util/realtimelogger.py
[2025-06-03 08:46:22] ./log.44871837._060848.job.log.1
15:49:32 (3650941): wrapper (7.7.26015): starting
15:49:32 (3650941): wrapper: running run_atlas (--nthreads 4)
[2025-06-06 15:49:32] Arguments: --nthreads 4
[2025-06-06 15:49:32] Threads: 4
[2025-06-06 15:49:32] This job has been restarted, cleaning up previous attempt
[2025-06-06 15:49:32] Checking for CVMFS
[2025-06-06 15:49:32] No cvmfs_config command found, will try listing directly
[2025-06-06 15:49:32] CVMFS is ok
[2025-06-06 15:49:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-06-06 15:49:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-06-06 15:49:32] Further information can be found at the LHC@home message board.
[2025-06-06 15:49:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-06-06 15:49:32] Checking for apptainer binary...
[2025-06-06 15:49:32] which: no apptainer in ((null))
[2025-06-06 15:49:32] apptainer is not installed, using version from CVMFS
[2025-06-06 15:49:32] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-06-06 15:49:32] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-06-06 15:49:32] apptainer works
[2025-06-06 15:49:32] Set ATHENA_PROC_NUMBER=4
[2025-06-06 15:49:32] Set ATHENA_CORE_NUMBER=4
[2025-06-06 15:49:32] Starting ATLAS job with PandaID=6666596653
[2025-06-06 15:49:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-06-06 15:52:39] Job failed
[2025-06-06 15:52:39] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment
[2025-06-06 15:52:39] ++ pwd
[2025-06-06 15:52:39] + export RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot24/slots/0/
[2025-06-06 15:52:39] + RUNTIME_CONFIG_DIR=/scratch/boinc/var/slot24/slots/0/
[2025-06-06 15:52:39] + mv ATLAS.root_0 EVNT.44871834._002404.pool.root.1
[2025-06-06 15:52:39] mv: 'ATLAS.root_0' and 'EVNT.44871834._002404.pool.root.1' are the same file
[2025-06-06 15:52:39] + tar --strip-components=5 -xvf input.tar.gz
[2025-06-06 15:52:39] + umask 077
[2025-06-06 15:52:39] ++ date +%s
[2025-06-06 15:52:39] + ACCOUNTING_STARTTIME=1749217773
[2025-06-06 15:52:39] + echo 'Detecting resource accounting method available for the job.'
[2025-06-06 15:52:39] Detecting resource accounting method available for the job.
[2025-06-06 15:52:39] + JOB_ACCOUNTING=
[2025-06-06 15:52:39] + command -v arc-job-cgroup
[2025-06-06 15:52:39] + '[' -z '' ']'
[2025-06-06 15:52:39] + GNU_TIME=/usr/bin/time
[2025-06-06 15:52:39] + echo 'Looking for /usr/bin/time tool for accounting measurements'
[2025-06-06 15:52:39] Looking for /usr/bin/time tool for accounting measurements
[2025-06-06 15:52:39] + '[' '!' -z /usr/bin/time ']'
[2025-06-06 15:52:39] + /usr/bin/time --version
[2025-06-06 15:52:39] + echo 'GNU time found and will be used for job accounting.'
[2025-06-06 15:52:39] GNU time found and will be used for job accounting.
[2025-06-06 15:52:39] + JOB_ACCOUNTING=gnutime
[2025-06-06 15:52:39] + '[' -z gnutime ']'
[2025-06-06 15:52:39] + export PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 15:52:39] + PANDA_JSID=harvester-CERN_central_ACTA
[2025-06-06 15:52:39] + export GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666596653.out
[2025-06-06 15:52:39] + GTAG=http://aipanda404.cern.ch/data/jobs/2025-05-27/BOINC_MCORE/6666596653.out
[2025-06-06 15:52:39] + export PILOT_NOKILL=YES
[2025-06-06 15:52:39] + PILOT_NOKILL=YES
[2025-06-06 15:52:39] + export GRID_GLOBAL_JOBID=KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-06-06 15:52:39] + GRID_GLOBAL_JOBID=KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-06-06 15:52:39] + export GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-06-06 15:52:39] + GRID_GLOBAL_JOBURL=https://arc-boinc-01.cern.ch:443/arex/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo
[2025-06-06 15:52:39] + export GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 15:52:39] + GRID_GLOBAL_JOBINTERFACE=org.nordugrid.arcrest
[2025-06-06 15:52:39] + export GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-06 15:52:39] + GRID_GLOBAL_JOBHOST=arc-boinc-01.cern.ch
[2025-06-06 15:52:39] ++ pwd
[2025-06-06 15:52:39] + RUNTIME_JOB_DIR=/scratch/boinc/var/slot24/slots/0
[2025-06-06 15:52:39] + RUNTIME_JOB_STDIN=/dev/null
[2025-06-06 15:52:39] ++ pwd
[2025-06-06 15:52:39] + RUNTIME_JOB_STDOUT=/scratch/boinc/var/slot24/slots/0/log.44871837._060848.job.log.1
[2025-06-06 15:52:39] ++ pwd
[2025-06-06 15:52:39] + RUNTIME_JOB_STDERR=/scratch/boinc/var/slot24/slots/0/log.44871837._060848.job.log.1
[2025-06-06 15:52:39] ++ pwd
[2025-06-06 15:52:39] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot24/slots/0.diag
[2025-06-06 15:52:39] + '[' '!' -z '' ']'
[2025-06-06 15:52:39] + RUNTIME_LOCAL_SCRATCH_DIR=
[2025-06-06 15:52:39] + RUNTIME_LOCAL_SCRATCH_MOVE_TOOL=mv
[2025-06-06 15:52:39] + RUNTIME_FRONTEND_SEES_NODE=
[2025-06-06 15:52:39] + RUNTIME_NODE_SEES_FRONTEND=yes
[2025-06-06 15:52:39] + '[' '!' -z '' ']'
[2025-06-06 15:52:39] + '[' -z yes ']'
[2025-06-06 15:52:39] ++ pwd
[2025-06-06 15:52:39] + RUNTIME_JOB_DIAG=/scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag
[2025-06-06 15:52:39] + runtimeenvironments=
[2025-06-06 15:52:39] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 15:52:39] + RTE_function_0 1
[2025-06-06 15:52:39] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:52:39] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:52:39] + export BOINC_APP=ATLAS
[2025-06-06 15:52:39] + BOINC_APP=ATLAS
[2025-06-06 15:52:39] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:52:39] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:52:39] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:52:39] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:52:39] + '[' -z 1 ']'
[2025-06-06 15:52:39] + '[' 1 == 1 ']'
[2025-06-06 15:52:39] + shift
[2025-06-06 15:52:39] + export ATLAS_LOCAL_AREA=/scratch/boinc/var/slot24/slots/0/
[2025-06-06 15:52:39] + ATLAS_LOCAL_AREA=/scratch/boinc/var/slot24/slots/0/
[2025-06-06 15:52:39] + '[' 0 -ne 0 ']'
[2025-06-06 15:52:39] + echo 'runtimeenvironments=APPS/HEP/ATLAS-SITE;'
[2025-06-06 15:52:39] + '[' -f /etc/os-release ']'
[2025-06-06 15:52:39] +++ cat /etc/os-release
[2025-06-06 15:52:39] ++ eval 'NAME="CentOS' 'Linux"' 'VERSION="7' '(Core)"' 'ID="centos"' 'ID_LIKE="rhel' 'fedora"' 'VERSION_ID="7"' 'PRETTY_NAME="CentOS' Linux 7 '(Core)"' 'ANSI_COLOR="0;31"' 'CPE_NAME="cpe:/o:centos:centos:7"' 'HOME_URL="https://www.centos.org/"' 'BUG_REPORT_URL="https://bugs.centos.org/"' 'CENTOS_MANTISBT_PROJECT="CentOS-7"' 'CENTOS_MANTISBT_PROJECT_VERSION="7"' 'REDHAT_SUPPORT_PRODUCT="centos"' 'REDHAT_SUPPORT_PRODUCT_VERSION="7"'
[2025-06-06 15:52:39] +++ NAME='CentOS Linux'
[2025-06-06 15:52:39] +++ VERSION='7 (Core)'
[2025-06-06 15:52:39] +++ ID=centos
[2025-06-06 15:52:39] +++ ID_LIKE='rhel fedora'
[2025-06-06 15:52:39] +++ VERSION_ID=7
[2025-06-06 15:52:39] +++ PRETTY_NAME='CentOS Linux 7 (Core)'
[2025-06-06 15:52:39] +++ ANSI_COLOR='0;31'
[2025-06-06 15:52:39] +++ CPE_NAME=cpe:/o:centos:centos:7
[2025-06-06 15:52:39] +++ HOME_URL=https://www.centos.org/
[2025-06-06 15:52:39] +++ BUG_REPORT_URL=https://bugs.centos.org/
[2025-06-06 15:52:39] +++ CENTOS_MANTISBT_PROJECT=CentOS-7
[2025-06-06 15:52:39] +++ CENTOS_MANTISBT_PROJECT_VERSION=7
[2025-06-06 15:52:39] +++ REDHAT_SUPPORT_PRODUCT=centos
[2025-06-06 15:52:39] +++ REDHAT_SUPPORT_PRODUCT_VERSION=7
[2025-06-06 15:52:39] ++ echo 'CentOS Linux 7 (Core)'
[2025-06-06 15:52:39] + SYSTEM_SOFTWARE='CentOS Linux 7 (Core)'
[2025-06-06 15:52:39] + '[' -n 'CentOS Linux 7 (Core)' ']'
[2025-06-06 15:52:39] + echo 'systemsoftware=CentOS Linux 7 (Core)'
[2025-06-06 15:52:39] + HOME=/scratch/boinc/var/slot24/slots/0
[2025-06-06 15:52:39] + export HOME
[2025-06-06 15:52:39] + cd /scratch/boinc/var/slot24/slots/0
[2025-06-06 15:52:39] + '[' '!' -z '' ']'
[2025-06-06 15:52:39] + '[' -z '' ']'
[2025-06-06 15:52:39] ++ /bin/hostname -f
[2025-06-06 15:52:39] + nodename=skurut14.grid.cesnet.cz
[2025-06-06 15:52:39] + echo nodename=skurut14.grid.cesnet.cz
[2025-06-06 15:52:39] + echo Processors=2
[2025-06-06 15:52:39] + echo Nodecount=1
[2025-06-06 15:52:39] + echo Benchmark=HEPSPEC:1.0
[2025-06-06 15:52:39] + executable=./runpilot2-wrapper.sh
[2025-06-06 15:52:39] + '[' '!' -f ./runpilot2-wrapper.sh ']'
[2025-06-06 15:52:39] ++ dd if=./runpilot2-wrapper.sh count=1
[2025-06-06 15:52:39] ++ head -n 1
[2025-06-06 15:52:39] ++ tr -d '\0'
[2025-06-06 15:52:39] + line1='#!/bin/bash'
[2025-06-06 15:52:39] ++ echo '#!/bin/bash'
[2025-06-06 15:52:39] ++ sed -n 's/^#! *//p'
[2025-06-06 15:52:39] + shebang=/bin/bash
[2025-06-06 15:52:39] ++ echo /bin/bash
[2025-06-06 15:52:39] ++ awk '{print $1}'
[2025-06-06 15:52:39] + interpreter=/bin/bash
[2025-06-06 15:52:39] + '[' /bin/bash = /usr/bin/env ']'
[2025-06-06 15:52:39] + '[' x/bin/bash = x ']'
[2025-06-06 15:52:39] + type /bin/bash
[2025-06-06 15:52:39] + '[' xgnutime = xgnutime ']'
[2025-06-06 15:52:39] + /usr/bin/time -o /scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' ./runpilot2-wrapper.sh -q BOINC_MCORE -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE --pilotversion 3.10.2.2 -z -t --piloturl local --mute --container
[2025-06-06 15:52:39] + RESULT=2
[2025-06-06 15:52:39] + sed -i -e /nodename=/d /scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag
[2025-06-06 15:52:39] ++ grep domain_name init_data.xml
[2025-06-06 15:52:39] ++ awk -F '>' '{print $2}'
[2025-06-06 15:52:39] ++ awk -F '<' '{print $1}'
[2025-06-06 15:52:39] ++ sed -e 's# #_#g'
[2025-06-06 15:52:39] + hostname=skurut14.grid.cesnet.cz
[2025-06-06 15:52:39] ++ grep user_name init_data.xml
[2025-06-06 15:52:39] ++ awk -F '>' '{print $2}'
[2025-06-06 15:52:39] ++ awk -F '<' '{print $1}'
[2025-06-06 15:52:39] ++ sed -e 's# #_#g'
[2025-06-06 15:52:39] + username=praguelcg2
[2025-06-06 15:52:39] + nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-06 15:52:39] + echo nodename=praguelcg2@skurut14.grid.cesnet.cz
[2025-06-06 15:52:39] + '[' -n 4 ']'
[2025-06-06 15:52:39] + sed -i -e s/Processors=1/Processors=4/ /scratch/boinc/var/slot24/slots/0/KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag
[2025-06-06 15:52:39] + echo exitcode=2
[2025-06-06 15:52:39] + runtimeenvironments=
[2025-06-06 15:52:39] + runtimeenvironments='APPS/HEP/ATLAS-SITE;'
[2025-06-06 15:52:39] + RTE_function_0 2
[2025-06-06 15:52:39] + export PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:52:39] + PROJECT_ROOT=/boincdata/boinc/project/lhcathome
[2025-06-06 15:52:39] + export BOINC_APP=ATLAS
[2025-06-06 15:52:39] + BOINC_APP=ATLAS
[2025-06-06 15:52:39] + export WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:52:39] + WU_TEMPLATE=templates/ATLAS_IN_DYNAMIC
[2025-06-06 15:52:39] + export RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:52:39] + RESULT_TEMPLATE=templates/ATLAS_OUT_2
[2025-06-06 15:52:39] + '[' -z 2 ']'
[2025-06-06 15:52:39] + '[' 2 == 1 ']'
[2025-06-06 15:52:39] + '[' 0 -ne 0 ']'
[2025-06-06 15:52:39] + echo 'zip all output files'
[2025-06-06 15:52:39] + flist='*.diag '
[2025-06-06 15:52:39] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-06 15:52:39] + '[' -e ./heartbeat.json ']'
[2025-06-06 15:52:39] + flist='*.diag  ./heartbeat.json'
[2025-06-06 15:52:39] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-06 15:52:39] + '[' -e ./output.list ']'
[2025-06-06 15:52:39] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-06 15:52:39] + '[' -e ./log.44871837._060848.job.log.1 ']'
[2025-06-06 15:52:39] + flist='*.diag  ./heartbeat.json ./log.44871837._060848.job.log.1'
[2025-06-06 15:52:39] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-06 15:52:39] + '[' -e ./log.44871837._060848.job.log.1 ']'
[2025-06-06 15:52:39] + flist='*.diag  ./heartbeat.json ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1'
[2025-06-06 15:52:39] + for f in ./heartbeat.json ./output.list ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1 ./gmlog/
[2025-06-06 15:52:39] + '[' -e ./gmlog/ ']'
[2025-06-06 15:52:39] + '[' -f output.list ']'
[2025-06-06 15:52:39] + tar cvf result.tar.gz KlPKDmSQzd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHLYKDmYcjwSo.diag ./heartbeat.json ./log.44871837._060848.job.log.1 ./log.44871837._060848.job.log.1
[2025-06-06 15:52:39] + '[' xgnutime = xcgroup ']'
[2025-06-06 15:52:39] + '[' -n '' ']'
[2025-06-06 15:52:39] + '[' -n '' ']'
[2025-06-06 15:52:39] ++ date +%s
[2025-06-06 15:52:39] + ACCOUNTING_ENDTIME=1749217959
[2025-06-06 15:52:39] ++ date -d '1970-01-01 UTC 1749217773 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 15:52:39] + echo LRMSStartTime=20250606154933Z
[2025-06-06 15:52:39] ++ date -d '1970-01-01 UTC 1749217959 seconds' +%Y%m%d%H%M%SZ
[2025-06-06 15:52:39] + echo LRMSEndTime=20250606155239Z
[2025-06-06 15:52:39] + echo walltime=186
[2025-06-06 15:52:39] + echo exitcode=2
[2025-06-06 15:52:39] + exit 2
[2025-06-06 15:52:39] ./pilotlog.txt
[2025-06-06 15:52:39] ./runtime_log.err
[2025-06-06 15:52:39] ./PanDA_Pilot-6666596653/prmon.log
[2025-06-06 15:52:39] ./PanDA_Pilot-6666596653/pilotlog.txt
[2025-06-06 15:52:39] ./PanDA_Pilot-6666596653/PoolFileCatalog.xml
[2025-06-06 15:52:39] ./PanDA_Pilot-6666596653/log.EVNTtoHITS
[2025-06-06 15:52:39] ./runtime_log
[2025-06-06 15:52:39] ./pilot3/pilot/util/__pycache__/loggingsupport.cpython-39.pyc
[2025-06-06 15:52:39] ./pilot3/pilot/util/__pycache__/lokirealtimelogger.cpython-39.pyc
[2025-06-06 15:52:39] ./pilot3/pilot/util/__pycache__/realtimelogger.cpython-39.pyc
[2025-06-06 15:52:39] ./pilot3/pilot/util/loggingsupport.py
[2025-06-06 15:52:39] ./pilot3/pilot/util/lokirealtimelogger.py
[2025-06-06 15:52:39] ./pilot3/pilot/util/realtimelogger.py
[2025-06-06 15:52:39] ./log.44871837._060848.job.log.1
16:02:40 (3650941): run_atlas exited; CPU time 12.270105
16:02:40 (3650941): app exit status: 0x1
16:02:40 (3650941): called boinc_finish(195)

</stderr_txt>
]]>

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