Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:28:05 (13386): wrapper (7.7.26015): starting
23:28:05 (13386): wrapper: running run_atlas (--nthreads 8)
[2025-05-27 23:28:05] Arguments: --nthreads 8
[2025-05-27 23:28:05] Threads: 8
[2025-05-27 23:28:05] Checking for CVMFS
[2025-05-27 23:28:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-27 23:28:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-27 23:28:07] Running cvmfs_config stat atlas.cern.ch
[2025-05-27 23:28:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-27 23:28:08] 2.11.2.0 27995 22246 93968 146494 2 16 21190219 25165825 4634 130560 0 12269773 99.797 13929882 1738 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-05-27 23:28:08] CVMFS is ok
[2025-05-27 23:28:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-27 23:28:08] Checking for apptainer binary...
[2025-05-27 23:28:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-27 23:28:08] Running /usr/bin/apptainer --version
[2025-05-27 23:28:08] apptainer version 1.3.2-1.el7
[2025-05-27 23:28:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-27 23:58:32] cg-vwn460.simple-grid.lan
[2025-05-27 23:58:32] apptainer works
[2025-05-27 23:58:32] Set ATHENA_PROC_NUMBER=8
[2025-05-27 23:58:32] Set ATHENA_CORE_NUMBER=8
[2025-05-27 23:58:32] Starting ATLAS job with PandaID=6666452563
[2025-05-27 23:58:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 07:18:02]  *** The last 200 lines of the pilot log: ***
[2025-05-28 07:18:02] 2025-05-28 03:00:59,376 | INFO     | extracted standard info from prmon json
[2025-05-28 07:18:02] 2025-05-28 03:00:59,376 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 07:18:02] 2025-05-28 03:00:59,376 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 07:18:02] 2025-05-28 03:00:59,377 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 07:18:02] 2025-05-28 03:00:59,377 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 07:18:02] 2025-05-28 03:00:59,383 | INFO     | fitting pss+swap vs Time
[2025-05-28 07:18:02] 2025-05-28 03:00:59,383 | INFO     | sum of square deviations: 7253894147.5
[2025-05-28 07:18:02] 2025-05-28 03:00:59,392 | INFO     | sum of deviations: 89495474516.50002
[2025-05-28 07:18:02] 2025-05-28 03:00:59,392 | INFO     | mean x: 1748392513.5
[2025-05-28 07:18:02] 2025-05-28 03:00:59,393 | INFO     | mean y: 2465582.8846153845
[2025-05-28 07:18:02] 2025-05-28 03:00:59,393 | INFO     | -- intersect: -21568460936.729126
[2025-05-28 07:18:02] 2025-05-28 03:00:59,393 | INFO     | intersect: -21568460936.729126
[2025-05-28 07:18:02] 2025-05-28 03:00:59,393 | INFO     | chi2: 8.778286505313838
[2025-05-28 07:18:02] 2025-05-28 03:00:59,394 | INFO     | sum of square deviations: 6880054580.0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,396 | INFO     | sum of deviations: 107037397107.99979
[2025-05-28 07:18:02] 2025-05-28 03:00:59,396 | INFO     | mean x: 1748392361.0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,396 | INFO     | mean y: 2472628.9893238433
[2025-05-28 07:18:02] 2025-05-28 03:00:59,396 | INFO     | -- intersect: -27198382432.38874
[2025-05-28 07:18:02] 2025-05-28 03:00:59,397 | INFO     | intersect: -27198382432.38874
[2025-05-28 07:18:02] 2025-05-28 03:00:59,397 | INFO     | chi2: 8.080676943701741
[2025-05-28 07:18:02] 2025-05-28 03:00:59,397 | INFO     | current chi2=8.080676943701741 (change=7.94699012375373 %)
[2025-05-28 07:18:02] 2025-05-28 03:00:59,397 | INFO     | right removable region: 280
[2025-05-28 07:18:02] 2025-05-28 03:00:59,398 | INFO     | sum of square deviations: 6880054580.0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,400 | INFO     | sum of deviations: -12249704019.999983
[2025-05-28 07:18:02] 2025-05-28 03:00:59,400 | INFO     | mean x: 1748392666.0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,400 | INFO     | mean y: 2507066.8505338077
[2025-05-28 07:18:02] 2025-05-28 03:00:59,401 | INFO     | -- intersect: 3115460956.998116
[2025-05-28 07:18:02] 2025-05-28 03:00:59,401 | INFO     | intersect: 3115460956.998116
[2025-05-28 07:18:02] 2025-05-28 03:00:59,401 | INFO     | chi2: 3.6724370873928622
[2025-05-28 07:18:02] 2025-05-28 03:00:59,401 | INFO     | current chi2=3.6724370873928622 (change=58.1645337598654 %)
[2025-05-28 07:18:02] 2025-05-28 03:00:59,402 | INFO     | sum of square deviations: 6519285025.0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,412 | INFO     | sum of deviations: -85045108710.0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,413 | INFO     | mean x: 1748392818.5
[2025-05-28 07:18:02] 2025-05-28 03:00:59,413 | INFO     | mean y: 2537782.268115942
[2025-05-28 07:18:02] 2025-05-28 03:00:59,413 | INFO     | -- intersect: 22810599823.874557
[2025-05-28 07:18:02] 2025-05-28 03:00:59,413 | INFO     | intersect: 22810599823.874557
[2025-05-28 07:18:02] 2025-05-28 03:00:59,413 | INFO     | chi2: 1.1299784083233542
[2025-05-28 07:18:02] 2025-05-28 03:00:59,413 | INFO     | current chi2=1.1299784083233542 (change=69.23083006098413 %)
[2025-05-28 07:18:02] 2025-05-28 03:00:59,414 | INFO     | sum of square deviations: 6171352920.0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,416 | INFO     | sum of deviations: -94366511450.99995
[2025-05-28 07:18:02] 2025-05-28 03:00:59,416 | INFO     | mean x: 1748392971.0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,416 | INFO     | mean y: 2541829.0885608857
[2025-05-28 07:18:02] 2025-05-28 03:00:59,416 | INFO     | -- intersect: 26737319025.839664
[2025-05-28 07:18:02] 2025-05-28 03:00:59,417 | INFO     | intersect: 26737319025.839664
[2025-05-28 07:18:02] 2025-05-28 03:00:59,417 | INFO     | chi2: 1.0209640379448104
[2025-05-28 07:18:02] 2025-05-28 03:00:59,417 | INFO     | current chi2=1.0209640379448104 (change=9.647473754856764 %)
[2025-05-28 07:18:02] 2025-05-28 03:00:59,417 | INFO     | left removable region: 30
[2025-05-28 07:18:02] 2025-05-28 03:00:59,418 | INFO     | sum of square deviations: 4844974562.5
[2025-05-28 07:18:02] 2025-05-28 03:00:59,420 | INFO     | sum of deviations: -52581368070.499985
[2025-05-28 07:18:02] 2025-05-28 03:00:59,420 | INFO     | mean x: 1748393245.5
[2025-05-28 07:18:02] 2025-05-28 03:00:59,420 | INFO     | mean y: 2540093.916
[2025-05-28 07:18:02] 2025-05-28 03:00:59,420 | INFO     | -- intersect: 18977440289.506355
[2025-05-28 07:18:02] 2025-05-28 03:00:59,420 | INFO     | intersect: 18977440289.506355
[2025-05-28 07:18:02] 2025-05-28 03:00:59,421 | INFO     | chi2: 0.21472609295250059
[2025-05-28 07:18:02] 2025-05-28 03:00:59,421 | INFO     | -- intersect: 18977440289.506355
[2025-05-28 07:18:02] 2025-05-28 03:00:59,421 | INFO     | current memory leak: -10.85 B/s (using 250 data points, chi2=0.21)
[2025-05-28 07:18:02] 2025-05-28 03:00:59,425 | INFO     | ..............................
[2025-05-28 07:18:02] 2025-05-28 03:00:59,426 | INFO     | . Timing measurements:
[2025-05-28 07:18:02] 2025-05-28 03:00:59,426 | INFO     | . get job = 0 s
[2025-05-28 07:18:02] 2025-05-28 03:00:59,426 | INFO     | . initial setup = 5 s
[2025-05-28 07:18:02] 2025-05-28 03:00:59,426 | INFO     | . payload setup = 160 s
[2025-05-28 07:18:02] 2025-05-28 03:00:59,426 | INFO     | . stage-in = 0 s
[2025-05-28 07:18:02] 2025-05-28 03:00:59,426 | INFO     | . payload execution = 17554 s
[2025-05-28 07:18:02] 2025-05-28 03:00:59,426 | INFO     | . stage-out = 5 s
[2025-05-28 07:18:02] 2025-05-28 03:00:59,426 | INFO     | . log creation = 1 s
[2025-05-28 07:18:02] 2025-05-28 03:00:59,426 | INFO     | ..............................
[2025-05-28 07:18:02] 2025-05-28 03:00:59,540 | INFO     | 
[2025-05-28 07:18:02] 2025-05-28 03:00:59,540 | INFO     | job summary report
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | --------------------------------------------------
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | PanDA job id: 6666452563
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | task id: 44871837
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | errors: (none)
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | pilot state: finished 
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | transexitcode: 0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | exeerrorcode: 0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | exeerrordiag: 
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | exitcode: 0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | exitmsg: OK
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | cpuconsumptiontime: 65396 s
[2025-05-28 07:18:02] 2025-05-28 03:00:59,541 | INFO     | nevents: 400
[2025-05-28 07:18:02] 2025-05-28 03:00:59,542 | INFO     | neventsw: 0
[2025-05-28 07:18:02] 2025-05-28 03:00:59,542 | INFO     | pid: 10253
[2025-05-28 07:18:02] 2025-05-28 03:00:59,542 | INFO     | pgrp: 10253
[2025-05-28 07:18:02] 2025-05-28 03:00:59,542 | INFO     | corecount: 8
[2025-05-28 07:18:02] 2025-05-28 03:00:59,542 | INFO     | event service: False
[2025-05-28 07:18:02] 2025-05-28 03:00:59,542 | INFO     | sizes: {0: 2405007, 1: 2405262, 12: 2405262, 23: 2405290, 33: 2405318, 44: 2405374, 55: 2405530, 65: 2405558, 76: 2405586, 87: 2405642, 96: 2405876, 98: 2406184, 1
[2025-05-28 07:18:02] 2025-05-28 03:00:59,542 | INFO     | --------------------------------------------------
[2025-05-28 07:18:02] 2025-05-28 03:00:59,542 | INFO     | 
[2025-05-28 07:18:02] 2025-05-28 03:00:59,542 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-05-28 07:18:02] 2025-05-28 03:01:00,151 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,151 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,151 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,151 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,152 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,153 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,153 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,153 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 07:18:02] 2025-05-28 03:01:00,153 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,153 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 07:18:02] 2025-05-28 03:01:00,153 | INFO     | job 6666452563 has completed (purged errors)
[2025-05-28 07:18:02] 2025-05-28 03:01:00,153 | INFO     | overall cleanup function is called
[2025-05-28 07:18:02] 2025-05-28 03:01:01,161 | INFO     | --- collectZombieJob: --- 10, [10253]
[2025-05-28 07:18:02] 2025-05-28 03:01:01,162 | INFO     | zombie collector waiting for pid 10253
[2025-05-28 07:18:02] 2025-05-28 03:01:01,162 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 07:18:02] 2025-05-28 03:01:01,162 | INFO     | collected zombie processes
[2025-05-28 07:18:02] 2025-05-28 03:01:01,162 | INFO     | will attempt to kill all subprocesses of pid=10253
[2025-05-28 07:18:02] 2025-05-28 03:01:01,274 | INFO     | process IDs to be killed: [10253] (in reverse order)
[2025-05-28 07:18:02] 2025-05-28 03:01:01,588 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 07:18:02] 2025-05-28 03:01:01,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 07:18:02] 2025-05-28 03:01:01,591 | INFO     | did not find any defunct processes belonging to 10253
[2025-05-28 07:18:02] 2025-05-28 03:01:01,594 | INFO     | did not find any defunct processes belonging to 10253
[2025-05-28 07:18:02] 2025-05-28 03:01:01,595 | INFO     | ready for new job
[2025-05-28 07:18:02] 2025-05-28 03:01:01,595 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 07:18:02] 2025-05-28 03:01:01,596 | INFO     | **************************************
[2025-05-28 07:18:02] 2025-05-28 03:01:01,597 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 07:18:02] 2025-05-28 03:01:01,597 | INFO     | **************************************
[2025-05-28 07:18:02] 2025-05-28 03:01:01,597 | INFO     | 
[2025-05-28 07:18:02] 2025-05-28 03:01:01,597 | INFO     | pilot is running in a VM
[2025-05-28 07:18:02] 2025-05-28 03:01:01,597 | INFO     | architecture information:
[2025-05-28 07:18:02] 2025-05-28 03:01:01,602 | INFO     | executing command: cat /etc/os-release
[2025-05-28 07:18:02] 2025-05-28 03:01:01,852 | INFO     | cat /etc/os-release:
[2025-05-28 07:18:02] NAME="CentOS Linux"
[2025-05-28 07:18:02] VERSION="7 (Core)"
[2025-05-28 07:18:02] ID="centos"
[2025-05-28 07:18:02] ID_LIKE="rhel fedora"
[2025-05-28 07:18:02] VERSION_ID="7"
[2025-05-28 07:18:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 07:18:02] ANSI_COLOR="0;31"
[2025-05-28 07:18:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 07:18:02] HOME_URL="https://www.centos.org/"
[2025-05-28 07:18:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 07:18:02] 
[2025-05-28 07:18:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 07:18:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 07:18:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 07:18:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 07:18:02] 
[2025-05-28 07:18:02] 2025-05-28 03:01:01,852 | INFO     | **************************************
[2025-05-28 07:18:02] 2025-05-28 03:01:02,356 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-05-28 07:18:02] 2025-05-28 03:01:02,657 | INFO     | sufficient remaining disk space (496331915264 B)
[2025-05-28 07:18:02] 2025-05-28 03:01:02,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 07:18:02] 2025-05-28 03:01:02,658 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 07:18:02] 2025-05-28 03:01:02,658 | INFO     | update_server=False
[2025-05-28 07:18:02] 2025-05-28 03:01:02,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 07:18:02] 2025-05-28 03:01:02,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 07:18:02] 2025-05-28 03:01:02,667 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 07:18:02] 2025-05-28 03:01:02,667 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 07:18:02] 2025-05-28 03:01:02,667 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 07:18:02] 2025-05-28 03:01:02,667 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 07:18:02] 2025-05-28 03:01:02,668 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 07:18:02] 2025-05-28 03:01:02,668 | INFO     | aborting loop
[2025-05-28 07:18:02] 2025-05-28 03:01:02,806 | INFO     | all payload control threads have been joined
[2025-05-28 07:18:02] 2025-05-28 03:01:03,470 | INFO     | all job control threads have been joined
[2025-05-28 07:18:02] 2025-05-28 03:01:03,664 | INFO     | [job] retrieve thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:03,675 | INFO     | [job] job monitor thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:03,683 | INFO     | all data control threads have been joined
[2025-05-28 07:18:02] 2025-05-28 03:01:03,812 | INFO     | [payload] control thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:03,945 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:04,144 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:04,247 | INFO     | [payload] failed_post thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:04,369 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:04,380 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 07:18:02] 2025-05-28 03:01:04,476 | INFO     | [job] control thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:04,559 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 07:18:02] 2025-05-28 03:01:04,611 | INFO     | [data] copytool_in thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:04,666 | INFO     | [data] copytool_out thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:04,689 | INFO     | [data] control thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:04,772 | INFO     | [payload] validate_post thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:04,835 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:05,138 | INFO     | [job] validate thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:05,565 | INFO     | [job] queue monitor thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:08,388 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 07:18:02] 2025-05-28 03:01:08,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139781008328512)>', '<ExcThread(monitor, started 139779962296064)>']
[2025-05-28 07:18:02] 2025-05-28 03:01:08,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 07:18:02] 2025-05-28 03:01:08,703 | INFO     | [monitor] control thread has ended
[2025-05-28 07:18:02] 2025-05-28 03:01:13,708 | INFO     | all workflow threads have been joined
[2025-05-28 07:18:02] 2025-05-28 03:01:13,708 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 07:18:02] 2025-05-28 03:01:13,708 | INFO     | traces error code: 0
[2025-05-28 07:18:02] 2025-05-28 03:01:13,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 07:18:02] 2025-05-28 03:01:13,991 [wrapper] ==== pilot stdout END ====
[2025-05-28 07:18:02] 2025-05-28 03:01:14,062 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 07:18:02] 2025-05-28 03:01:14,066 [wrapper] pilotpid: 1650
[2025-05-28 07:18:02] 2025-05-28 03:01:14,070 [wrapper] Pilot exit status: 0
[2025-05-28 07:18:02] 2025-05-28 03:01:14,108 [wrapper] pandaids: 6666452563
[2025-05-28 07:18:02] 2025-05-28 03:01:15,169 [wrapper] cleanup supervisor_pilot 28493 1651
[2025-05-28 07:18:02] 2025-05-28 03:01:15,284 [wrapper] Test setup, not cleaning
[2025-05-28 07:18:02] 2025-05-28 03:01:15,374 [wrapper] apfmon messages muted
[2025-05-28 07:18:02] 2025-05-28 03:01:15,389 [wrapper] ==== wrapper stdout END ====
[2025-05-28 07:18:02] 2025-05-28 03:01:15,435 [wrapper] ==== wrapper stderr END ====
[2025-05-28 07:18:02]  *** Error codes and diagnostics ***
[2025-05-28 07:18:02]     "exeErrorCode": 0,
[2025-05-28 07:18:02]     "exeErrorDiag": "",
[2025-05-28 07:18:02]     "pilotErrorCode": 0,
[2025-05-28 07:18:02]     "pilotErrorDiag": "",
[2025-05-28 07:18:02]  *** Listing of results directory ***
[2025-05-28 07:18:02] total 422900
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc    495897 May 27 00:07 pilot3.tar.gz
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc      5111 May 27 01:08 queuedata.json
[2025-05-28 07:18:02] -rwx------. 1 boinc boinc     37140 May 27 01:12 runpilot2-wrapper.sh
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc       100 May 27 23:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 07:18:02] -rwxr-xr-x. 1 boinc boinc      7986 May 27 23:28 run_atlas
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc       105 May 27 23:28 job.xml
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc      6372 May 27 23:28 init_data.xml
[2025-05-28 07:18:02] -rw-r--r--. 2 boinc boinc 223964233 May 27 23:28 EVNT.44871834._002313.pool.root.1
[2025-05-28 07:18:02] -rw-r--r--. 2 boinc boinc     15093 May 27 23:28 start_atlas.sh
[2025-05-28 07:18:02] drwxrwx--x. 2 boinc boinc        68 May 27 23:28 shared
[2025-05-28 07:18:02] -rw-r--r--. 2 boinc boinc    508881 May 27 23:28 input.tar.gz
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc         0 May 27 23:28 boinc_lockfile
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc      2559 May 27 23:58 pandaJob.out
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc    991111 May 28 00:01 agis_schedconf.cvmfs.json
[2025-05-28 07:18:02] drwx------. 4 boinc boinc      4096 May 28 00:01 pilot3
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc 201384210 May 28 04:59 HITS.44871837._058437.pool.root.1
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc       531 May 28 05:00 boinc_task_state.xml
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc      1017 May 28 05:00 memory_monitor_summary.json
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc   1603667 May 28 05:00 agis_ddmendpoints.agis.ALL.json
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc    411935 May 28 05:00 log.44871837._058437.job.log.tgz.1
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc        95 May 28 05:00 pilot_heartbeat.json
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc      7694 May 28 05:00 heartbeat.json
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc      4539 May 28 05:01 pilotlog.txt
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc   1520832 May 28 05:01 log.44871837._058437.job.log.1
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc       357 May 28 05:01 output.list
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc       620 May 28 05:01 runtime_log
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc   1955840 May 28 05:01 result.tar.gz
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc      8659 May 28 05:01 runtime_log.err
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc       657 May 28 05:01 nLDMDmTAwd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKvXKDmS8ignm.diag
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc      8192 May 28 07:18 boinc_mmap_file
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc        28 May 28 07:18 wrapper_checkpoint.txt
[2025-05-28 07:18:02] -rw-r--r--. 1 boinc boinc     20512 May 28 07:18 stderr.txt
[2025-05-28 07:18:02] HITS file was successfully produced:
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc 201384210 May 28 04:59 shared/HITS.pool.root.1
[2025-05-28 07:18:02]  *** Contents of shared directory: ***
[2025-05-28 07:18:02] total 417812
[2025-05-28 07:18:02] -rw-r--r--. 2 boinc boinc 223964233 May 27 23:28 ATLAS.root_0
[2025-05-28 07:18:02] -rw-r--r--. 2 boinc boinc     15093 May 27 23:28 start_atlas.sh
[2025-05-28 07:18:02] -rw-r--r--. 2 boinc boinc    508881 May 27 23:28 input.tar.gz
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc 201384210 May 28 04:59 HITS.pool.root.1
[2025-05-28 07:18:02] -rw-------. 1 boinc boinc   1955840 May 28 05:01 result.tar.gz
07:18:04 (13386): run_atlas exited; CPU time 65626.471294
07:18:04 (13386): called boinc_finish(0)

</stderr_txt>
]]>

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