Stderr output

<core_client_version>7.22.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-05-29 15:52:07 (13580): Detected: vboxwrapper 26206
2025-05-29 15:52:07 (13580): Detected: BOINC client v7.22.2
2025-05-29 15:52:08 (13580): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-05-29 15:52:08 (13580): Successfully copied 'init_data.xml' to the shared directory.
2025-05-29 15:52:09 (13580): Create VM. (boinc_35a4f3cafb95a0c7, slot#3)
2025-05-29 15:52:10 (13580): Setting Memory Size for VM. (4700MB)
2025-05-29 15:52:10 (13580): Setting CPU Count for VM. (7)
2025-05-29 15:52:10 (13580): Setting Chipset Options for VM.
2025-05-29 15:52:11 (13580): Setting Graphics Controller Options for VM.
2025-05-29 15:52:11 (13580): Setting Boot Options for VM.
2025-05-29 15:52:11 (13580): Setting Network Configuration for NAT.
2025-05-29 15:52:12 (13580): Enabling VM Network Access.
2025-05-29 15:52:12 (13580): Disabling USB Support for VM.
2025-05-29 15:52:12 (13580): Disabling COM Port Support for VM.
2025-05-29 15:52:13 (13580): Disabling LPT Port Support for VM.
2025-05-29 15:52:13 (13580): Disabling Audio Support for VM.
2025-05-29 15:52:13 (13580): Disabling Clipboard Support for VM.
2025-05-29 15:52:14 (13580): Disabling Drag and Drop Support for VM.
2025-05-29 15:52:14 (13580): Adding storage controller(s) to VM.
2025-05-29 15:52:14 (13580): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-05-29 15:52:18 (13580): Adding VirtualBox Guest Additions to VM.
2025-05-29 15:52:18 (13580): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-05-29 15:52:19 (13580): forwarding host port 64856 to guest port 80
2025-05-29 15:52:19 (13580): Enabling remote desktop for VM.
2025-05-29 15:52:19 (13580): Required extension pack not installed, remote desktop not enabled.
2025-05-29 15:52:19 (13580): Enabling shared directory for VM.
2025-05-29 15:52:20 (13580): Starting VM using VBoxManage interface. (boinc_35a4f3cafb95a0c7, slot#3)
2025-05-29 15:52:31 (13580): Successfully started VM. (PID = '13768')
2025-05-29 15:52:31 (13580): Reporting VM Process ID to BOINC.
2025-05-29 15:52:31 (13580): Guest Log: BIOS: VirtualBox 7.0.6
2025-05-29 15:52:31 (13580): Guest Log: CPUID EDX: 0x178bfbff
2025-05-29 15:52:31 (13580): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-05-29 15:52:31 (13580): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-05-29 15:52:31 (13580): VM state change detected. (old = 'poweredoff', new = 'running')
2025-05-29 15:52:31 (13580): Detected: Web Application Enabled (http://localhost:64856)
2025-05-29 15:52:31 (13580): Preference change detected
2025-05-29 15:52:31 (13580): Setting CPU throttle for VM. (75%)
2025-05-29 15:52:31 (13580): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-05-29 15:52:33 (13580): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-05-29 15:52:33 (13580): Guest Log: BIOS: Booting from Hard Disk...
2025-05-29 15:52:39 (13580): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-05-29 15:52:39 (13580): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-05-29 15:52:39 (13580): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-05-29 15:52:58 (13580): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-05-29 15:52:58 (13580): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-05-29 15:53:33 (13580): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-05-29 15:53:33 (13580): Guest Log: 00:00:00.000471 main     Log opened 2025-05-29T15:53:30.219629000Z
2025-05-29 15:53:33 (13580): Guest Log: 00:00:00.000780 main     OS Product: Linux
2025-05-29 15:53:33 (13580): Guest Log: 00:00:00.000871 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-05-29 15:53:33 (13580): Guest Log: 00:00:00.000957 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-05-29 15:53:33 (13580): Guest Log: 00:00:00.001055 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-05-29 15:53:33 (13580): Guest Log: 00:00:00.001057 main     Process ID: 1327
2025-05-29 15:53:33 (13580): Guest Log: 00:00:00.001058 main     Package type: LINUX_64BITS_GENERIC
2025-05-29 15:53:33 (13580): Guest Log: 00:00:00.003191 main     5.2.32 r132073 started. Verbose level = 0
2025-05-29 15:53:33 (13580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-05-29 15:53:33 (13580): Guest Log: [INFO] Mounting shared directory
2025-05-29 15:53:33 (13580): Guest Log: [INFO] Checking for init_data.xml
2025-05-29 15:53:38 (13580): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-05-29 15:53:38 (13580): Guest Log: [INFO] Detected branch: prod
2025-05-29 15:53:38 (13580): Guest Log: This is the prod version of the ATLAS job wrapper
2025-05-29 15:53:38 (13580): Guest Log: Copying input files
2025-05-29 15:53:43 (13580): Guest Log: 00:00:10.030532 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 412 013 173 000ns (GuestNow=1 748 548 422 246 346 000 ns GuestLast=1 748 534 010 233 173 000 ns fSetTimeLastLoop=true )
2025-05-29 15:53:44 (13580): Guest Log: Copied input files into RunAtlas.
2025-05-29 15:53:44 (13580): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-05-29 15:53:44 (13580): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-05-29 15:53:44 (13580): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-05-29 15:53:44 (13580): Guest Log: Further information can be found at the LHC@home message board.
2025-05-29 15:53:55 (13580): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-05-29 15:53:56 (13580): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-05-29 15:53:56 (13580): Guest Log: 2.6.3.0 1607 0 29940 146573 3 1 3117617 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-05-29 15:54:09 (13580): Guest Log: copied the webapp to /var/www
2025-05-29 15:54:09 (13580): Guest Log: ATHENA_PROC_NUMBER=7
2025-05-29 15:54:09 (13580): Guest Log: ATHENA_CORE_NUMBER=7
2025-05-29 15:54:09 (13580): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-05-29 15:54:09 (13580): Guest Log:  *** Starting ATLAS job. (PandaID=6666763279 taskID=44871837) ***
2025-05-29 16:06:31 (13580): Guest Log:  *** Job finished ***
2025-05-29 16:06:31 (13580): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:20,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:21,276 | INFO     | [job] queue monitor thread has finished
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:23,188 | INFO     | [data] queue_monitor thread has finished
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:23,412 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140567935080256)>', '<ExcThread(monitor, started 140567358990080)>']
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:23,705 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:23,706 | INFO     | [monitor] control thread has ended
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:28,413 | INFO     | all workflow threads have been joined
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:28,414 | INFO     | end of generic workflow (traces error code: 0)
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:28,415 | INFO     | traces error code: 0
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:28,416 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:28,849 [wrapper] ==== pilot stdout END ====
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:28,881 [wrapper] ==== wrapper stdout RESUME ====
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:28,904 [wrapper] pilotpid: 5957
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:28,923 [wrapper] Pilot exit status: 0
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:29,039 [wrapper] pandaids: 6666763279
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:29,151 [wrapper] cleanup supervisor_pilot  5963 5958
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:29,174 [wrapper] Test setup, not cleaning
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:29,195 [wrapper] apfmon messages muted
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:29,215 [wrapper] ==== wrapper stdout END ====
2025-05-29 16:06:31 (13580): Guest Log: 2025-05-29 20:06:29,234 [wrapper] ==== wrapper stderr END ====
2025-05-29 16:06:31 (13580): Guest Log:  *** Error codes and diagnostics ***
2025-05-29 16:06:31 (13580): Guest Log:     "exeErrorCode": 65,
2025-05-29 16:06:31 (13580): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-05-29 16:06:31 (13580): Guest Log:     "pilotErrorCode": 1305,
2025-05-29 16:06:31 (13580): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGILL signal (exit code 132)",
2025-05-29 16:06:31 (13580): Guest Log:  *** Listing of results directory ***
2025-05-29 16:06:31 (13580): Guest Log: total 4124
2025-05-29 16:06:31 (13580): Guest Log: -rw-r--r--. 1 atlas atlas  495897 May 27 04:09 pilot3.tar.gz
2025-05-29 16:06:31 (13580): Guest Log: -rwx------. 1 atlas atlas   37140 May 27 04:40 runpilot2-wrapper.sh
2025-05-29 16:06:31 (13580): Guest Log: -rw-r--r--. 1 atlas atlas    5111 May 27 04:40 queuedata.json
2025-05-29 16:06:31 (13580): Guest Log: -rwxr-xr-x. 1 atlas atlas    6093 May 29 19:53 init_data.xml
2025-05-29 16:06:31 (13580): Guest Log: -rwxr-xr-x. 1 atlas atlas  508873 May 29 19:53 input.tar.gz
2025-05-29 16:06:31 (13580): Guest Log: -rwxr-xr-x. 1 atlas atlas   15093 May 29 19:53 start_atlas.sh
2025-05-29 16:06:31 (13580): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 May 29 19:53 EVNT.44871834._002457.pool.root.1 -> /data/./ATLAS.root_0
2025-05-29 16:06:31 (13580): Guest Log: -rw-r--r--. 1 atlas atlas    2559 May 29 19:54 pandaJob.out
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas  992471 May 29 19:55 agis_schedconf.cvmfs.json
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas 1603667 May 29 19:55 agis_ddmendpoints.agis.ALL.json
2025-05-29 16:06:31 (13580): Guest Log: drwx------. 4 atlas atlas    4096 May 29 19:55 pilot3
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas   50523 May 29 20:03 log.44871837._062270.job.log.tgz.1
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas      95 May 29 20:05 pilot_heartbeat.json
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas    8130 May 29 20:06 heartbeat.json
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas    4536 May 29 20:06 pilotlog.txt
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas  180339 May 29 20:06 log.44871837._062270.job.log.1
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas     188 May 29 20:06 output.list
2025-05-29 16:06:31 (13580): Guest Log: -rw-r--r--. 1 atlas atlas     620 May 29 20:06 runtime_log
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas  245760 May 29 20:06 result.tar.gz
2025-05-29 16:06:31 (13580): Guest Log: -rw-r--r--. 1 atlas atlas    8448 May 29 20:06 runtime_log.err
2025-05-29 16:06:31 (13580): Guest Log: -rw-------. 1 atlas atlas     647 May 29 20:06 bu6NDm6H1d7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtKRKDm3LB7tm.diag
2025-05-29 16:06:31 (13580): Guest Log: Looking for outputfile HITS.44871837._062270.pool.root.1
2025-05-29 16:06:31 (13580): Guest Log: No HITS file was produced
2025-05-29 16:06:31 (13580): Guest Log: Successfully finished the ATLAS job!
2025-05-29 16:06:31 (13580): Guest Log: Copying the results back to the shared directory!
2025-05-29 16:06:32 (13580): Guest Log:  *** Contents of shared directory: ***
2025-05-29 16:06:32 (13580): Guest Log: total 219472
2025-05-29 16:06:32 (13580): Guest Log: -rwxrwxrwx. 1 root root 223955005 May 29 19:52 ATLAS.root_0
2025-05-29 16:06:32 (13580): Guest Log: -rwxrwxrwx. 1 root root      6093 May 29 19:52 init_data.xml
2025-05-29 16:06:32 (13580): Guest Log: -rwxrwxrwx. 1 root root    508873 May 27 07:47 input.tar.gz
2025-05-29 16:06:32 (13580): Guest Log: -rwxrwxrwx. 1 root root    245760 May 29 20:06 result.tar.gz
2025-05-29 16:06:32 (13580): Guest Log: -rwxrwxrwx. 1 root root     15093 May 27 07:47 start_atlas.sh
2025-05-29 16:06:32 (13580): Guest Log:  *** Success! Shutting down the machine. ***
2025-05-29 16:06:32 (13580): VM Completion File Detected.
2025-05-29 16:06:32 (13580): Powering off VM.
2025-05-29 16:06:34 (13580): Successfully stopped VM.
2025-05-29 16:06:34 (13580): Deregistering VM. (boinc_35a4f3cafb95a0c7, slot#3)
2025-05-29 16:06:34 (13580): Removing network bandwidth throttle group from VM.
2025-05-29 16:06:35 (13580): Removing VM from VirtualBox.
16:06:40 (13580): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN