Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
16:36:58 (1396094): wrapper (7.7.26015): starting
16:36:58 (1396094): wrapper: running run_atlas (--nthreads 4)
[2025-05-28 16:36:58] Arguments: --nthreads 4
[2025-05-28 16:36:58] Threads: 4
[2025-05-28 16:36:58] Checking for CVMFS
[2025-05-28 16:36:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-05-28 16:36:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-05-28 16:36:58] Running cvmfs_config stat atlas.cern.ch
[2025-05-28 16:36:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-05-28 16:36:58] 2.12.7.0 14849 12497 47016 146520 3 55 27535551 33554432 0 130560 0 4614753 99.988 1529717 1669 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2025-05-28 16:36:58] CVMFS is ok
[2025-05-28 16:36:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-05-28 16:36:58] Checking for apptainer binary...
[2025-05-28 16:36:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-05-28 16:36:58] Running /usr/bin/apptainer --version
[2025-05-28 16:36:58] apptainer version 1.4.0
[2025-05-28 16:36:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-05-28 16:36:58] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2025-05-28 16:36:58] apptainer works
[2025-05-28 16:36:58] Set ATHENA_PROC_NUMBER=4
[2025-05-28 16:36:58] Set ATHENA_CORE_NUMBER=4
[2025-05-28 16:36:58] Starting ATLAS job with PandaID=6666594101
[2025-05-28 16:36:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-05-28 17:53:32]  *** The last 200 lines of the pilot log: ***
[2025-05-28 17:53:32]  filetype=log
[2025-05-28 17:53:32]  guid=c1bb7a43-8528-44b7-b230-21841b26304f
[2025-05-28 17:53:32]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-05-28 17:53:32]  is_altstaged=None
[2025-05-28 17:53:32]  is_tar=False
[2025-05-28 17:53:32]  lfn=log.44871837._059556.job.log.tgz.1
[2025-05-28 17:53:32]  mtime=0
[2025-05-28 17:53:32]  protocol_id=None
[2025-05-28 17:53:32]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-05-28 17:53:32]  replicas=None
[2025-05-28 17:53:32]  scope=mc23_13p6TeV
[2025-05-28 17:53:32]  status=None
[2025-05-28 17:53:32]  status_code=0
[2025-05-28 17:53:32]  storage_token=
[2025-05-28 17:53:32]  surl=/home/ek/BOINC/slots/1/PanDA_Pilot-6666594101/log.44871837._059556.job.log.tgz.1
[2025-05-28 17:53:32]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/60/log.44871837._059556.job.log.tgz.1
[2025-05-28 17:53:32]  workdir=None
[2025-05-28 17:53:32] ]
[2025-05-28 17:53:32] 2025-05-28 14:53:15,025 | INFO     | transferring file log.44871837._059556.job.log.tgz.1 from /home/ek/BOINC/slots/1/PanDA_Pilot-6666594101/log.44871837._059556.job.log.tgz.1 to /home/ek/BOINC/slots/
[2025-05-28 17:53:32] 2025-05-28 14:53:15,025 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/1/PanDA_Pilot-6666594101/log.44871837._059556.job.log.tgz.1 /home/ek/BOINC/slots/1/log.44871837._059556.job
[2025-05-28 17:53:32] 2025-05-28 14:53:15,034 | INFO     | adding to output.list: log.44871837._059556.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/60/log.44871837._059556.job.log.tg
[2025-05-28 17:53:32] 2025-05-28 14:53:15,034 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-05-28 17:53:32] 2025-05-28 14:53:15,034 | INFO     | summary of transferred files:
[2025-05-28 17:53:32] 2025-05-28 14:53:15,035 | INFO     |  -- lfn=log.44871837._059556.job.log.tgz.1, status_code=0, status=transferred
[2025-05-28 17:53:32] 2025-05-28 14:53:15,035 | INFO     | stage-out finished correctly
[2025-05-28 17:53:32] 2025-05-28 14:53:15,626 | WARNING  | process 1406566 can no longer be monitored (due to stat problems) - aborting
[2025-05-28 17:53:32] 2025-05-28 14:53:15,626 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6666594101/memory_monitor_summary.json (trf name=prmon)
[2025-05-28 17:53:32] 2025-05-28 14:53:15,733 | INFO     | number of running child processes to parent process 1406566: 1
[2025-05-28 17:53:32] 2025-05-28 14:53:15,734 | INFO     | maximum number of monitored processes: 6
[2025-05-28 17:53:32] 2025-05-28 14:53:16,312 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-05-28 17:53:32] 2025-05-28 14:53:16,343 | INFO     | job 6666594101 has state=finished
[2025-05-28 17:53:32] 2025-05-28 14:53:16,343 | INFO     | preparing for final server update for job 6666594101 in state='finished'
[2025-05-28 17:53:32] 2025-05-28 14:53:16,343 | INFO     | this job has now completed (state=finished)
[2025-05-28 17:53:32] 2025-05-28 14:53:16,343 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-05-28 17:53:32] 2025-05-28 14:53:16,343 | INFO     | log transfer has been attempted: DONE
[2025-05-28 17:53:32] 2025-05-28 14:53:16,343 | INFO     | job 6666594101 has finished - writing final server update
[2025-05-28 17:53:32] 2025-05-28 14:53:16,343 | INFO     | total number of processed events: 400 (read)
[2025-05-28 17:53:32] 2025-05-28 14:53:16,344 | INFO     | executing command: lscpu
[2025-05-28 17:53:32] 2025-05-28 14:53:16,358 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-05-28 17:53:32] 2025-05-28 14:53:18,182 | INFO     | CPU arch script returned: x86-64-v3
[2025-05-28 17:53:32] 2025-05-28 14:53:18,183 | INFO     | using path: /home/ek/BOINC/slots/1/PanDA_Pilot-6666594101/memory_monitor_summary.json (trf name=prmon)
[2025-05-28 17:53:32] 2025-05-28 14:53:18,183 | INFO     | extracted standard info from prmon json
[2025-05-28 17:53:32] 2025-05-28 14:53:18,183 | INFO     | extracted standard memory fields from prmon json
[2025-05-28 17:53:32] 2025-05-28 14:53:18,183 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-05-28 17:53:32] 2025-05-28 14:53:18,183 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-05-28 17:53:32] 2025-05-28 14:53:18,183 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | fitting pss+swap vs Time
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | sum of square deviations: 97479037.0
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | sum of deviations: -13666196457.499998
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | mean x: 1748441791.5
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | mean y: 2523870.8088235296
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | -- intersect: 245127524614.73544
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | intersect: 245127524614.73544
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | chi2: 0.13686516282309671
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | -- intersect: 245127524614.73544
[2025-05-28 17:53:32] 2025-05-28 14:53:18,184 | INFO     | current memory leak: -140.20 B/s (using 68 data points, chi2=0.14)
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | ..............................
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | . Timing measurements:
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | . get job = 0 s
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | . initial setup = 1 s
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | . payload setup = 3 s
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | . stage-in = 0 s
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | . payload execution = 4551 s
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | . stage-out = 0 s
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | . log creation = 0 s
[2025-05-28 17:53:32] 2025-05-28 14:53:18,185 | INFO     | ..............................
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | 
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | job summary report
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | --------------------------------------------------
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | PanDA job id: 6666594101
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | task id: 44871837
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | errors: (none)
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | status: LOG_TRANSFER = DONE 
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | pilot state: finished 
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | transexitcode: 0
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | exeerrorcode: 0
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | exeerrordiag: 
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | exitcode: 0
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | exitmsg: OK
[2025-05-28 17:53:32] 2025-05-28 14:53:18,217 | INFO     | cpuconsumptiontime: 17327 s
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | nevents: 400
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | neventsw: 0
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | pid: 1406566
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | pgrp: 1406566
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | corecount: 4
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | event service: False
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | sizes: {0: 2405228, 2: 2405434, 11: 2405462, 4558: 2440605, 4559: 2440605, 4561: 2440775}
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | --------------------------------------------------
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | 
[2025-05-28 17:53:32] 2025-05-28 14:53:18,218 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/1
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue jobs had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue payloads had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue data_in had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue data_out had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,229 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,230 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,230 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,230 | INFO     | queue completed_jobids has 1 job(s)
[2025-05-28 17:53:32] 2025-05-28 14:53:18,230 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,230 | INFO     | queue messages had 0 job(s) [purged]
[2025-05-28 17:53:32] 2025-05-28 14:53:18,230 | INFO     | job 6666594101 has completed (purged errors)
[2025-05-28 17:53:32] 2025-05-28 14:53:18,230 | INFO     | overall cleanup function is called
[2025-05-28 17:53:32] 2025-05-28 14:53:19,236 | INFO     | --- collectZombieJob: --- 10, [1406566]
[2025-05-28 17:53:32] 2025-05-28 14:53:19,236 | INFO     | zombie collector waiting for pid 1406566
[2025-05-28 17:53:32] 2025-05-28 14:53:19,236 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-05-28 17:53:32] 2025-05-28 14:53:19,237 | INFO     | collected zombie processes
[2025-05-28 17:53:32] 2025-05-28 14:53:19,237 | INFO     | will attempt to kill all subprocesses of pid=1406566
[2025-05-28 17:53:32] 2025-05-28 14:53:19,353 | INFO     | process IDs to be killed: [1406566] (in reverse order)
[2025-05-28 17:53:32] 2025-05-28 14:53:19,387 | WARNING  | found no corresponding commands to process id(s)
[2025-05-28 17:53:32] 2025-05-28 14:53:19,388 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-05-28 17:53:32] 2025-05-28 14:53:19,391 | INFO     | did not find any defunct processes belonging to 1406566
[2025-05-28 17:53:32] 2025-05-28 14:53:19,394 | INFO     | did not find any defunct processes belonging to 1406566
[2025-05-28 17:53:32] 2025-05-28 14:53:19,394 | INFO     | ready for new job
[2025-05-28 17:53:32] 2025-05-28 14:53:19,394 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-05-28 17:53:32] 2025-05-28 14:53:19,394 | INFO     | **************************************
[2025-05-28 17:53:32] 2025-05-28 14:53:19,395 | INFO     | ***  PanDA Pilot version 3.10.2.2  ***
[2025-05-28 17:53:32] 2025-05-28 14:53:19,395 | INFO     | **************************************
[2025-05-28 17:53:32] 2025-05-28 14:53:19,395 | INFO     | 
[2025-05-28 17:53:32] 2025-05-28 14:53:19,395 | INFO     | architecture information:
[2025-05-28 17:53:32] 2025-05-28 14:53:19,396 | INFO     | executing command: cat /etc/os-release
[2025-05-28 17:53:32] 2025-05-28 14:53:19,403 | INFO     | cat /etc/os-release:
[2025-05-28 17:53:32] NAME="CentOS Linux"
[2025-05-28 17:53:32] VERSION="7 (Core)"
[2025-05-28 17:53:32] ID="centos"
[2025-05-28 17:53:32] ID_LIKE="rhel fedora"
[2025-05-28 17:53:32] VERSION_ID="7"
[2025-05-28 17:53:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-05-28 17:53:32] ANSI_COLOR="0;31"
[2025-05-28 17:53:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-05-28 17:53:32] HOME_URL="https://www.centos.org/"
[2025-05-28 17:53:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-05-28 17:53:32] 
[2025-05-28 17:53:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-05-28 17:53:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-05-28 17:53:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-05-28 17:53:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-05-28 17:53:32] 
[2025-05-28 17:53:32] 2025-05-28 14:53:19,403 | INFO     | **************************************
[2025-05-28 17:53:32] 2025-05-28 14:53:19,906 | INFO     | executing command: df -mP /home/ek/BOINC/slots/1
[2025-05-28 17:53:32] 2025-05-28 14:53:19,914 | INFO     | sufficient remaining disk space (134046810112 B)
[2025-05-28 17:53:32] 2025-05-28 14:53:19,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-05-28 17:53:32] 2025-05-28 14:53:19,914 | INFO     | current server update state: UPDATING_FINAL
[2025-05-28 17:53:32] 2025-05-28 14:53:19,914 | INFO     | update_server=False
[2025-05-28 17:53:32] 2025-05-28 14:53:19,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-05-28 17:53:32] 2025-05-28 14:53:19,914 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-05-28 17:53:32] 2025-05-28 14:53:19,914 | INFO     | found 0 job(s) in 20 queues
[2025-05-28 17:53:32] 2025-05-28 14:53:19,914 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-05-28 17:53:32] 2025-05-28 14:53:19,914 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-05-28 17:53:32] 2025-05-28 14:53:19,915 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-05-28 17:53:32] 2025-05-28 14:53:19,915 | INFO     | aborting loop
[2025-05-28 17:53:32] 2025-05-28 14:53:19,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-05-28 17:53:32] 2025-05-28 14:53:20,038 | INFO     | all data control threads have been joined
[2025-05-28 17:53:32] 2025-05-28 14:53:20,415 | INFO     | job.realtimelogging is not enabled
[2025-05-28 17:53:32] 2025-05-28 14:53:20,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-05-28 17:53:32] 2025-05-28 14:53:20,919 | INFO     | [job] retrieve thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:20,920 | INFO     | [job] job monitor thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:20,921 | INFO     | [job] queue monitor thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:20,923 | INFO     | all payload control threads have been joined
[2025-05-28 17:53:32] 2025-05-28 14:53:20,966 | INFO     | [data] copytool_in thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:21,035 | INFO     | [payload] failed_post thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:21,043 | INFO     | [data] control thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:21,420 | INFO     | [payload] run_realtimelog thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:21,447 | INFO     | all job control threads have been joined
[2025-05-28 17:53:32] 2025-05-28 14:53:21,666 | INFO     | [payload] execute_payloads thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:21,797 | INFO     | [job] validate thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:21,855 | INFO     | [job] create_data_payload thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:21,928 | INFO     | [payload] control thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:21,941 | INFO     | [payload] validate_pre thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:22,097 | INFO     | [payload] validate_post thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:22,348 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-05-28 17:53:32] 2025-05-28 14:53:22,452 | INFO     | [job] control thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:22,579 | INFO     | [data] copytool_out thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:26,353 | INFO     | [data] queue_monitor thread has finished
[2025-05-28 17:53:32] 2025-05-28 14:53:27,737 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139882383574848)>', '<ExcThread(monitor, started 139881883875072)>']
[2025-05-28 17:53:32] 2025-05-28 14:53:27,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-05-28 17:53:32] 2025-05-28 14:53:27,955 | INFO     | [monitor] control thread has ended
[2025-05-28 17:53:32] 2025-05-28 14:53:32,762 | INFO     | all workflow threads have been joined
[2025-05-28 17:53:32] 2025-05-28 14:53:32,762 | INFO     | end of generic workflow (traces error code: 0)
[2025-05-28 17:53:32] 2025-05-28 14:53:32,762 | INFO     | traces error code: 0
[2025-05-28 17:53:32] 2025-05-28 14:53:32,762 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-05-28 17:53:32] 2025-05-28 14:53:32,811 [wrapper] ==== pilot stdout END ====
[2025-05-28 17:53:32] 2025-05-28 14:53:32,813 [wrapper] ==== wrapper stdout RESUME ====
[2025-05-28 17:53:32] 2025-05-28 14:53:32,815 [wrapper] pilotpid: 1399836
[2025-05-28 17:53:32] 2025-05-28 14:53:32,816 [wrapper] Pilot exit status: 0
[2025-05-28 17:53:32] 2025-05-28 14:53:32,822 [wrapper] pandaids: 6666594101
[2025-05-28 17:53:32] 2025-05-28 14:53:32,844 [wrapper] cleanup supervisor_pilot 1464178 1399837
[2025-05-28 17:53:32] 2025-05-28 14:53:32,845 [wrapper] Test setup, not cleaning
[2025-05-28 17:53:32] 2025-05-28 14:53:32,847 [wrapper] apfmon messages muted
[2025-05-28 17:53:32] 2025-05-28 14:53:32,848 [wrapper] ==== wrapper stdout END ====
[2025-05-28 17:53:32] 2025-05-28 14:53:32,852 [wrapper] ==== wrapper stderr END ====
[2025-05-28 17:53:32]  *** Error codes and diagnostics ***
[2025-05-28 17:53:32]     "exeErrorCode": 0,
[2025-05-28 17:53:32]     "exeErrorDiag": "",
[2025-05-28 17:53:32]     "pilotErrorCode": 0,
[2025-05-28 17:53:32]     "pilotErrorDiag": "",
[2025-05-28 17:53:32]  *** Listing of results directory ***
[2025-05-28 17:53:32] total 420008
[2025-05-28 17:53:32] -rw-r--r-- 1 ek ek    495897 May 27 03:11 pilot3.tar.gz
[2025-05-28 17:53:32] -rw-r--r-- 1 ek ek      5111 May 27 03:37 queuedata.json
[2025-05-28 17:53:32] -rwx------ 1 ek ek     37140 May 27 03:38 runpilot2-wrapper.sh
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek       100 May 28 16:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-05-28 17:53:32] -rwxr-xr-x 1 ek ek      7986 May 28 16:36 run_atlas
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek       105 May 28 16:36 job.xml
[2025-05-28 17:53:32] -rw-r--r-- 2 ek ek 224619881 May 28 16:36 EVNT.44871834._002353.pool.root.1
[2025-05-28 17:53:32] -rw-r--r-- 2 ek ek    508877 May 28 16:36 input.tar.gz
[2025-05-28 17:53:32] -rw-r--r-- 2 ek ek     15093 May 28 16:36 start_atlas.sh
[2025-05-28 17:53:32] drwxrwx--x 2 ek ek      4096 May 28 16:36 shared
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek         0 May 28 16:36 boinc_setup_complete
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek      9842 May 28 16:36 init_data.xml
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek         0 May 28 16:36 boinc_lockfile
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek      2556 May 28 16:36 pandaJob.out
[2025-05-28 17:53:32] -rw------- 1 ek ek    991925 May 28 16:37 agis_schedconf.cvmfs.json
[2025-05-28 17:53:32] -rw------- 1 ek ek   1603667 May 28 16:37 agis_ddmendpoints.agis.ALL.json
[2025-05-28 17:53:32] drwx------ 4 ek ek      4096 May 28 16:37 pilot3
[2025-05-28 17:53:32] -rw------- 1 ek ek        95 May 28 17:52 pilot_heartbeat.json
[2025-05-28 17:53:32] -rw------- 1 ek ek 200271192 May 28 17:52 HITS.44871837._059556.pool.root.1
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek      8192 May 28 17:53 boinc_mmap_file
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek        27 May 28 17:53 wrapper_checkpoint.txt
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek       529 May 28 17:53 boinc_task_state.xml
[2025-05-28 17:53:32] -rw------- 1 ek ek      1035 May 28 17:53 memory_monitor_summary.json
[2025-05-28 17:53:32] -rw------- 1 ek ek    228313 May 28 17:53 log.44871837._059556.job.log.tgz.1
[2025-05-28 17:53:32] -rw------- 1 ek ek      7705 May 28 17:53 heartbeat.json
[2025-05-28 17:53:32] -rw------- 1 ek ek      4549 May 28 17:53 pilotlog.txt
[2025-05-28 17:53:32] -rw------- 1 ek ek    446066 May 28 17:53 log.44871837._059556.job.log.1
[2025-05-28 17:53:32] -rw------- 1 ek ek       357 May 28 17:53 output.list
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek       620 May 28 17:53 runtime_log
[2025-05-28 17:53:32] -rw------- 1 ek ek    696320 May 28 17:53 result.tar.gz
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek      8854 May 28 17:53 runtime_log.err
[2025-05-28 17:53:32] -rw------- 1 ek ek       666 May 28 17:53 dZAODmwVxd7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmy5XKDmJqiRWo.diag
[2025-05-28 17:53:32] -rw-rw-r-- 1 ek ek     21033 May 28 17:53 stderr.txt
[2025-05-28 17:53:32] HITS file was successfully produced:
[2025-05-28 17:53:32] -rw------- 1 ek ek 200271192 May 28 17:52 shared/HITS.pool.root.1
[2025-05-28 17:53:32]  *** Contents of shared directory: ***
[2025-05-28 17:53:32] total 416140
[2025-05-28 17:53:32] -rw-r--r-- 2 ek ek 224619881 May 28 16:36 ATLAS.root_0
[2025-05-28 17:53:32] -rw-r--r-- 2 ek ek    508877 May 28 16:36 input.tar.gz
[2025-05-28 17:53:32] -rw-r--r-- 2 ek ek     15093 May 28 16:36 start_atlas.sh
[2025-05-28 17:53:32] -rw------- 1 ek ek 200271192 May 28 17:52 HITS.pool.root.1
[2025-05-28 17:53:32] -rw------- 1 ek ek    696320 May 28 17:53 result.tar.gz
17:53:34 (1396094): run_atlas exited; CPU time 17365.356628
17:53:34 (1396094): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN